Primates Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of primates only.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser
[IGV browser]
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
1 Angolan colobus[IGV] Colobus angolensis palliatus GCF_000951035.1_Cang.pa_1.0 SAMN03121814 PRJNA251421 2015-03-12
2 Assam macaque (KIZ-2021_13 2022)[IGV] Macaca assamensis GCA_023783095.1_ASM2378309v1 SAMN23575344 PRJNA785018 2022-06-17
3 aye-aye (BS11 Broad 2019)[IGV] Daubentonia madagascariensis GCA_004027145.1_DauMad_v1_BIUU SAMN07678077 PRJNA399387 2019-01-16
4 aye-aye (KIZ-2021_6 2022)[IGV] Daubentonia madagascariensis GCA_023783475.1_ASM2378347v1 SAMN23575337 PRJNA785018 2022-06-17
5 babakoto[IGV] Indri indri GCA_004363605.1_IndInd_v1_BIUU SAMN07678091 PRJNA399458 2019-03-22
6 Bengal slow loris (KIZ-2021_18 2022)[IGV] Nycticebus bengalensis GCA_023898255.1_ASM2389825v1 SAMN23575349 PRJNA785018 2022-06-27
7 black crested mangabey (KIZ-2021_11 2022)[IGV] Lophocebus aterrimus GCA_023783235.1_ASM2378323v1 SAMN23575342 PRJNA785018 2022-06-17
8 black snub-nosed monkey (Rb0 v2 refseq 2016)[IGV] Rhinopithecus bieti GCF_001698545.2_ASM169854v2 SAMN02786331 PRJNA315476 2016-08-03
9 black-handed spider monkey (BS17 Broad 2019)[IGV] Ateles geoffroyi GCA_004024785.1_AteGeo_v1_BIUU SAMN07678064 PRJNA399374 2019-01-15
10 black-handed spider monkey (KIZ-2021_1 2022)[IGV] Ateles geoffroyi GCA_023783555.1_ASM2378355v1 SAMN23575332 PRJNA785018 2022-06-17
11 black-shanked douc langur (KIZ-2021_22 2022)[IGV] Pygathrix nigripes GCA_023764695.1_ASM2376469v1 SAMN23575353 PRJNA785018 2022-06-17
12 blue monkey (Sample3913 2023)[IGV] Cercopithecus mitis GCA_028627265.1_Cercopithecus_mitis_HiC SAMN25565059 PRJNA512907 2023-02-16
13 Bolivian squirrel monkey (100643 v2.1 BCM 2021)[IGV] Saimiri boliviensis boliviensis GCF_016699345.2_BCM_Sbol_2.1 SAMN16846876 PRJNA679316 2021-01-12
14 Bolivian titi[IGV] Plecturocebus donacophilus GCA_004027715.1_CalDon_v1_BIUU SAMN07678140 PRJNA399376 2019-01-16
15 Bornean orangutan (KIZ-2021_21 2022)[IGV] Pongo pygmaeus GCA_023767775.1_ASM2376777v1 SAMN23575352 PRJNA785018 2022-06-17
16 Bornean orangutan (v2 AG05252 alternate hap 2024)[IGV] Pongo pygmaeus GCA_028885525.2_NHGRI_mPonPyg2-v2.0_alt SAMN10521809 PRJNA916740 2024-01-08
17 Bornean orangutan (v2 AG05252 primary hap 2024 genbank)[IGV] Pongo pygmaeus GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri SAMN10521809 PRJNA916742 2024-01-08
18 Bornean orangutan (v2 AG05252 primary hap 2024 refseq)[IGV] Pongo pygmaeus GCF_028885625.2_NHGRI_mPonPyg2-v2.0_pri SAMN10521809 PRJNA916742 2024-01-08
19 brown lemur[IGV] Eulemur fulvus GCA_004027275.1_EulFul_v1_BIUU SAMN07678083 PRJNA399393 2019-01-16
20 Burmese snub-nosed monkey (KIZ-2021_23 2022)[IGV] Rhinopithecus strykeri GCA_023764705.1_ASM2376470v1 SAMN23575354 PRJNA785018 2022-06-17
21 chimpanzee (Clint C0471 2018 refseq)[IGV] Pan troglodytes GCF_002880755.1_Clint_PTRv2 SAMN06272697 PRJNA369439 2018-01-19
22 chimpanzee (v2 AG18354 alternate hap 2024)[IGV] Pan troglodytes GCA_028858805.2_NHGRI_mPanTro3-v2.0_alt SAMN30216104 PRJNA916737 2024-01-08
23 chimpanzee (v2 AG18354 primary hap 2024 genbank)[IGV] Pan troglodytes GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri SAMN30216104 PRJNA916736 2024-01-08
24 chimpanzee (v2 AG18354 primary hap 2024 refseq)[IGV] Pan troglodytes GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri SAMN30216104 PRJNA916736 2024-01-08
25 Coquerel's mouse lemur[IGV] Mirza coquereli GCA_004024645.1_MizCoq_v1_BIUU SAMN07678095 PRJNA399404 2019-01-15
26 Coquerel's sifaka 6110/Marcella (2015 refseq)[IGV] Propithecus coquereli GCF_000956105.1_Pcoq_1.0 SAMN03121823 PRJNA251429 2015-03-23
27 cotton-top tamarin (B95-8 2023)[IGV] Saguinus oedipus GCA_031835075.1_ASM3183507v1 SAMN34055629 PRJNA951749 2023-09-25
28 crab-eating macaque (2020 cy0333)[IGV] Macaca fascicularis GCA_011100615.1_Macaca_fascicularis_6.0 SAMN14146612 PRJNA607781 2020-03-10
29 crab-eating macaque (582-1 2024)[IGV] Macaca fascicularis GCF_037993035.1_T2T-MFA8v1.0 SAMN38317298 PRJNA1037719 2024-04-05
30 crab-eating macaque CE1976F Keio U/RIKEN 2021[IGV] Macaca fascicularis GCF_012559485.2_MFA1912RKSv2 SAMD00204697 PRJDB9269 2021-10-26
31 De Brazza's monkey[IGV] Cercopithecus neglectus GCA_004027615.1_CertNeg_v1_BIUU SAMN07678070 PRJNA399380 2019-01-16
32 drill (KB7577 Baylor 2015)[IGV] Mandrillus leucophaeus GCF_000951045.1_Mleu.le_1.0 SAMN03121813 PRJNA251423 2015-03-12
33 drill (KIZ-2021_15 2022)[IGV] Mandrillus leucophaeus GCA_023783495.1_ASM2378349v1 SAMN23575346 PRJNA785018 2022-06-17
34 Eastern hoolock gibbon (KIZ-2021_9 2022)[IGV] Hoolock leuconedys GCA_023748175.1_ASM2374817v1 SAMN23575340 PRJNA785018 2022-06-16
35 Francois's langur[IGV] Trachypithecus francoisi GCF_009764315.1_Tfra_2.0 SAMN12630612 PRJNA488530 2019-12-18
36 gelada[IGV] Theropithecus gelada GCF_003255815.1_Tgel_1.0 SAMN09197221 PRJNA470999 2018-06-19
37 golden lion tamarin (Coari 2023)[IGV] Leontopithecus rosalia GCA_028533165.1_Leontopithecus_rosalia_HiC SAMN21582245 PRJNA512907 2023-02-09
38 golden snub-nosed monkey (2019 Northwest U)[IGV] Rhinopithecus roxellana GCF_007565055.1_ASM756505v1 SAMN11039125 PRJNA524949 2019-07-29
39 golden-brown mouse lemur (RMR55 2019)[IGV] Microcebus ravelobensis GCA_008750975.1_Mrav_1.0 SAMN10707782 PRJNA512515 2019-09-30
40 gray mouse lemur[IGV] Microcebus murinus GCF_000165445.2_Mmur_3.0 SAMN06275470 PRJNA19967 2017-02-06
41 greater bamboo lemur (KIAN8.4 2018)[IGV] Prolemur simus GCA_003258685.1_Prosim_1.0 SAMN05853041 PRJNA344914 2018-06-20
42 green monkey 1994-021 (2014 refseq)[IGV] Chlorocebus sabaeus GCF_000409795.2_Chlorocebus_sabeus_1.1 SAMN01760484 PRJNA168621 2014-03-25
43 green monkey WHO RCB 10-87[IGV] Chlorocebus sabaeus GCF_015252025.1_Vero_WHO_p1.0 SAMN15458746 PRJNA644395 2020-11-06
44 grivet (KIZ-2021_4 2022)[IGV] Chlorocebus aethiops GCA_023783515.1_ASM2378351v1 SAMN23575335 PRJNA785018 2022-06-17
45 hamadryas baboon (KIZ-2021_19 2022)[IGV] Papio hamadryas GCA_023781915.1_ASM2378191v1 SAMN23575350 PRJNA785018 2022-06-17
46 Hanuman langur[IGV] Semnopithecus entellus GCA_004025065.1_SemEnt_v1_BIUU SAMN07678111 PRJNA399419 2019-01-15
47 Horsfield's tarsier (2022)[IGV] Cephalopachus bancanus GCA_027257055.1_ASM2725705v1 SAMN32156893 PRJNA911016 2022-12-23
48 human (HG00438.mat 2021)[IGV] Homo sapiens GCA_018471515.1_HG00438.pri.mat.f1_v2 SAMN17861652 PRJNA726273 2021-05-24
49 human (HG00438.pat 2021)[IGV] Homo sapiens GCA_018472595.1_HG00438.alt.pat.f1_v2 SAMN17861652 PRJNA726272 2021-05-24
50 human (HG00621.mat 2021)[IGV] Homo sapiens GCA_018472605.1_HG00621.pri.mat.f1_v2 SAMN17861653 PRJNA726275 2021-05-24
51 human (HG00621.pat 2021)[IGV] Homo sapiens GCA_018472575.1_HG00621.alt.pat.f1_v2 SAMN17861653 PRJNA726274 2021-05-24
52 human (HG00673.mat 2021)[IGV] Homo sapiens GCA_018472565.1_HG00673.pri.mat.f1_v2 SAMN17861654 PRJNA726271 2021-05-24
53 human (HG00673.pat 2021)[IGV] Homo sapiens GCA_018472585.1_HG00673.alt.pat.f1_v2 SAMN17861654 PRJNA726270 2021-05-24
54 human (HG00733.mat 2021)[IGV] Homo sapiens GCA_018506975.1_HG00733.pri.mat.f1_v2 SAMN00006581 PRJNA727433 2021-05-26
55 human (HG00733.pat 2021)[IGV] Homo sapiens GCA_018506955.1_HG00733.alt.pat.f1_v2 SAMN00006581 PRJNA727432 2021-05-26
56 human (HG00735.mat 2021)[IGV] Homo sapiens GCA_018472765.1_HG00735.pri.mat.f1_v2 SAMN17861655 PRJNA726279 2021-05-24
57 human (HG00735.pat 2021)[IGV] Homo sapiens GCA_018472715.1_HG00735.alt.pat.f1_v2 SAMN17861655 PRJNA726278 2021-05-24
58 human (HG00741.mat 2021)[IGV] Homo sapiens GCA_018471095.1_HG00741.pri.mat.f1_v2 SAMN17861656 PRJNA726225 2021-05-24
59 human (HG00741.pat 2021)[IGV] Homo sapiens GCA_018471105.1_HG00741.alt.pat.f1_v2 SAMN17861656 PRJNA726224 2021-05-24
60 human (HG01071.mat 2021)[IGV] Homo sapiens GCA_018472685.1_HG01071.pri.mat.f1_v2 SAMN17861657 PRJNA726277 2021-05-24
61 human (HG01071.pat 2021)[IGV] Homo sapiens GCA_018472725.1_HG01071.alt.pat.f1_v2 SAMN17861657 PRJNA726276 2021-05-24
62 human (HG01106.mat 2021)[IGV] Homo sapiens GCA_018471345.1_HG01106.pri.mat.f1_v2 SAMN17861658 PRJNA726229 2021-05-24
63 human (HG01106.pat 2021)[IGV] Homo sapiens GCA_018471075.1_HG01106.alt.pat.f1_v2 SAMN17861658 PRJNA726228 2021-05-24
64 human (HG01109.mat 2021)[IGV] Homo sapiens GCA_018504365.1_HG01109.pri.mat.f1_v2 SAMN12162846 PRJNA727363 2021-05-26
65 human (HG01109.pat 2021)[IGV] Homo sapiens GCA_018504645.1_HG01109.alt.pat.f1_v2 SAMN12162846 PRJNA727362 2021-05-26
66 human (HG01123.mat 2021)[IGV] Homo sapiens GCA_018469665.1_HG01123.pri.mat.f1_v2.1 SAMN17861232 PRJNA725610 2021-05-24
67 human (HG01123.pat 2021)[IGV] Homo sapiens GCA_018469695.1_HG01123.alt.pat.f1_v2.1 SAMN17861232 PRJNA725609 2021-05-24
68 human (HG01175.mat 2021)[IGV] Homo sapiens GCA_018471085.1_HG01175.pri.mat.f1_v2 SAMN17861659 PRJNA726227 2021-05-24
69 human (HG01175.pat 2021)[IGV] Homo sapiens GCA_018471065.1_HG01175.alt.pat.f1_v2 SAMN17861659 PRJNA726226 2021-05-24
70 human (HG01243 John Hopkins 2021)[IGV] Homo sapiens GCA_018873775.2_hg01243.v3.0 SAMN13957917 PRJNA730525 2021-09-27
71 human (HG01243.mat 2021)[IGV] Homo sapiens GCA_018504375.1_HG01243.pri.mat.f1_v2 SAMN13957917 PRJNA727361 2021-05-26
72 human (HG01243.pat 2021)[IGV] Homo sapiens GCA_018504045.1_HG01243.alt.pat.f1_v2 SAMN13957917 PRJNA727360 2021-05-26
73 human (HG01258.mat 2021)[IGV] Homo sapiens GCA_018469405.1_HG01258.pri.mat.f1_v2 SAMN17861233 PRJNA725606 2021-05-24
74 human (HG01258.pat 2021)[IGV] Homo sapiens GCA_018469675.1_HG01258.alt.pat.f1_v2 SAMN17861233 PRJNA725605 2021-05-24
75 human (HG01358.mat 2021)[IGV] Homo sapiens GCA_018469865.1_HG01358.pri.mat.f1_v2.1 SAMN17861234 PRJNA725612 2021-05-24
76 human (HG01358.pat 2021)[IGV] Homo sapiens GCA_018469965.1_HG01358.alt.pat.f1_v2.1 SAMN17861234 PRJNA725611 2021-05-24
77 human (HG01361.mat 2021)[IGV] Homo sapiens GCA_018469685.1_HG01361.pri.mat.f1_v2 SAMN17861235 PRJNA725608 2021-05-24
78 human (HG01361.pat 2021)[IGV] Homo sapiens GCA_018469705.1_HG01361.alt.pat.f1_v2 SAMN17861235 PRJNA725607 2021-05-24
79 human (HG01891.mat 2021)[IGV] Homo sapiens GCA_018467155.1_HG01891.pri.mat.f1_v2 SAMN17861236 PRJNA723023 2021-05-24
80 human (HG01891.pat 2021)[IGV] Homo sapiens GCA_018467165.1_HG01891.alt.pat.f1_v2 SAMN17861236 PRJNA723022 2021-05-24
81 human (HG01928.mat 2021)[IGV] Homo sapiens GCA_018472695.1_HG01928.pri.mat.f1_v2 SAMN17861660 PRJNA726174 2021-05-24
82 human (HG01928.pat 2021)[IGV] Homo sapiens GCA_018472705.1_HG01928.alt.pat.f1_v2 SAMN17861660 PRJNA726173 2021-05-24
83 human (HG01952.mat 2021)[IGV] Homo sapiens GCA_018471545.1_HG01952.pri.mat.f1_v2 SAMN17861661 PRJNA726231 2021-05-24
84 human (HG01952.pat 2021)[IGV] Homo sapiens GCA_018471555.1_HG01952.alt.pat.f1_v2 SAMN17861661 PRJNA726230 2021-05-24
85 human (HG01978.mat 2021)[IGV] Homo sapiens GCA_018472865.1_HG01978.pri.mat.f1_v2 SAMN17861662 PRJNA726176 2021-05-24
86 human (HG01978.pat 2021)[IGV] Homo sapiens GCA_018472845.1_HG01978.alt.pat.f1_v2 SAMN17861662 PRJNA726175 2021-05-24
87 human (HG02055.mat 2021)[IGV] Homo sapiens GCA_018506125.1_HG02055.pri.mat.f1_v2 SAMN12162856 PRJNA727422 2021-05-26
88 human (HG02055.pat 2021)[IGV] Homo sapiens GCA_018505855.1_HG02055.alt.pat.f1_v2 SAMN12162856 PRJNA727421 2021-05-26
89 human (HG02080.mat 2021)[IGV] Homo sapiens GCA_018504085.1_HG02080.pri.mat.f1_v2 SAMN13957942 PRJNA727359 2021-05-26
90 human (HG02080.pat 2021)[IGV] Homo sapiens GCA_018504055.1_HG02080.alt.pat.f1_v2 SAMN13957942 PRJNA727358 2021-05-26
91 human (HG02109.mat 2021)[IGV] Homo sapiens GCA_018505825.1_HG02109.pri.mat.f1_v2 SAMN13958415 PRJNA727418 2021-05-26
92 human (HG02109.pat 2021)[IGV] Homo sapiens GCA_018505865.1_HG02109.alt.pat.f1_v2 SAMN13958415 PRJNA727417 2021-05-26
93 human (HG02145.mat 2021)[IGV] Homo sapiens GCA_018852585.1_HG02145.pri.mat.f1_v2 SAMN13961514 PRJNA727416 2021-06-11
94 human (HG02145.pat 2021)[IGV] Homo sapiens GCA_018852595.1_HG02145.alt.pat.f1_v2 SAMN13961514 PRJNA727415 2021-06-11
95 human (HG02148.mat 2021)[IGV] Homo sapiens GCA_018471535.1_HG02148.pri.mat.f1_v2 SAMN17861663 PRJNA726233 2021-05-24
96 human (HG02148.pat 2021)[IGV] Homo sapiens GCA_018471525.1_HG02148.alt.pat.f1_v2 SAMN17861663 PRJNA726232 2021-05-24
97 human (HG02257.mat 2021)[IGV] Homo sapiens GCA_018466845.1_HG02257.pri.mat.f1_v2 SAMN17861237 PRJNA723017 2021-05-24
98 human (HG02257.pat 2021)[IGV] Homo sapiens GCA_018466835.1_HG02257.alt.pat.f1_v2 SAMN17861237 PRJNA723016 2021-05-24
99 human (HG02486.mat 2021)[IGV] Homo sapiens GCA_018467015.1_HG02486.pri.mat.f1_v2 SAMN17861238 PRJNA723021 2021-05-24
100 human (HG02486.pat 2021)[IGV] Homo sapiens GCA_018467005.1_HG02486.alt.pat.f1_v2 SAMN17861238 PRJNA723020 2021-05-24
101 human (HG02559.mat 2021)[IGV] Homo sapiens GCA_018466985.1_HG02559.pri.mat.f1_v2 SAMN17861239 PRJNA723019 2021-05-24
102 human (HG02559.pat 2021)[IGV] Homo sapiens GCA_018466855.1_HG02559.alt.pat.f1_v2 SAMN17861239 PRJNA723018 2021-05-24
103 human (HG02572.mat 2021)[IGV] Homo sapiens GCA_018470445.1_HG02572.pri.mat.f1_v2 SAMN17861240 PRJNA725863 2021-05-24
104 human (HG02572.pat 2021)[IGV] Homo sapiens GCA_018470435.1_HG02572.alt.pat.f1_v2 SAMN17861240 PRJNA725862 2021-05-24
105 human (HG02622.mat 2021)[IGV] Homo sapiens GCA_018469875.1_HG02622.pri.mat.f1_v2 SAMN17861664 PRJNA725855 2021-05-24
106 human (HG02622.pat 2021)[IGV] Homo sapiens GCA_018469925.1_HG02622.alt.pat.f1_v2 SAMN17861664 PRJNA725854 2021-05-24
107 human (HG02630.mat 2021)[IGV] Homo sapiens GCA_018469955.1_HG02630.pri.mat.f1_v2 SAMN17861665 PRJNA725857 2021-05-24
108 human (HG02630.pat 2021)[IGV] Homo sapiens GCA_018469945.1_HG02630.alt.pat.f1_v2 SAMN17861665 PRJNA725856 2021-05-24
109 human (HG02717.mat 2021)[IGV] Homo sapiens GCA_018469935.1_HG02717.pri.mat.f1_v2 SAMN17861666 PRJNA725859 2021-05-24
110 human (HG02717.pat 2021)[IGV] Homo sapiens GCA_018470425.1_HG02717.alt.pat.f1_v2 SAMN17861666 PRJNA725858 2021-05-24
111 human (HG02723.mat 2021)[IGV] Homo sapiens GCA_018504065.1_HG02723.pri.mat.f1_v2 SAMN13958364 PRJNA727349 2021-05-26
112 human (HG02723.pat 2021)[IGV] Homo sapiens GCA_018504075.1_HG02723.alt.pat.f1_v2 SAMN13958364 PRJNA727348 2021-05-26
113 human (HG02818.mat 2021)[IGV] Homo sapiens GCA_018503585.1_HG02818.pri.mat.f1_v2 SAMN05603745 PRJNA727347 2021-05-26
114 human (HG02818.pat 2021)[IGV] Homo sapiens GCA_018503575.1_HG02818.alt.pat.f1_v2 SAMN05603745 PRJNA727346 2021-05-26
115 human (HG02886.mat 2021)[IGV] Homo sapiens GCA_018470455.1_HG02886.pri.mat.f1_v2 SAMN17861667 PRJNA725861 2021-05-24
116 human (HG02886.pat 2021)[IGV] Homo sapiens GCA_018470465.1_HG02886.alt.pat.f1_v2 SAMN17861667 PRJNA725860 2021-05-24
117 human (HG03098.mat 2021)[IGV] Homo sapiens GCA_018506165.1_HG03098.pri.mat.f1_v2 SAMN13957944 PRJNA727424 2021-05-26
118 human (HG03098.pat 2021)[IGV] Homo sapiens GCA_018506155.1_HG03098.alt.pat.f1_v2 SAMN13957944 PRJNA727423 2021-05-26
119 human (HG03453.mat 2021)[IGV] Homo sapiens GCA_018472855.1_HG03453.pri.mat.f1_v2 SAMN17861668 PRJNA726180 2021-05-24
120 human (HG03453.pat 2021)[IGV] Homo sapiens GCA_018473305.1_HG03453.alt.pat.f1_v2 SAMN17861668 PRJNA726179 2021-05-24
121 human (HG03486.mat 2021)[IGV] Homo sapiens GCA_018503525.1_HG03486.pri.mat.f1_v2 SAMN08723473 PRJNA727345 2021-05-26
122 human (HG03486.pat 2021)[IGV] Homo sapiens GCA_018503245.1_HG03486.alt.pat.f1_v2 SAMN08723473 PRJNA727344 2021-05-26
123 human (HG03492.mat 2021)[IGV] Homo sapiens GCA_018505845.1_HG03492.pri.mat.f1_v2 SAMN13958363 PRJNA727420 2021-05-26
124 human (HG03492.pat 2021)[IGV] Homo sapiens GCA_018505835.1_HG03492.alt.pat.f1_v2 SAMN13958363 PRJNA727419 2021-05-26
125 human (HG03516.mat 2021)[IGV] Homo sapiens GCA_018469425.1_HG03516.pri.mat.f1_v2 SAMN17861241 PRJNA725604 2021-05-24
126 human (HG03516.pat 2021)[IGV] Homo sapiens GCA_018469415.1_HG03516.alt.pat.f1_v2 SAMN17861241 PRJNA725603 2021-05-24
127 human (HG03540.mat 2021)[IGV] Homo sapiens GCA_018473295.1_HG03540.pri.mat.f1_v2 SAMN17861670 PRJNA726182 2021-05-24
128 human (HG03540.pat 2021)[IGV] Homo sapiens GCA_018473315.1_HG03540.alt.pat.f1_v2 SAMN17861670 PRJNA726181 2021-05-24
129 human (HG03579.mat 2021)[IGV] Homo sapiens GCA_018472825.1_HG03579.pri.mat.f1_v2 SAMN17861671 PRJNA726178 2021-05-24
130 human (HG03579.pat 2021)[IGV] Homo sapiens GCA_018472835.1_HG03579.alt.pat.f1_v2 SAMN17861671 PRJNA726177 2021-05-24
131 human (mHomSap3 WGS:JACSEX01 2021)[IGV] Homo sapiens GCA_016695395.2_mHomSap3.mat SAMN12568975 PRJNA562023 2021-01-19
132 human (NA18906.mat 2021)[IGV] Homo sapiens GCA_018503255.1_NA18906.pri.mat.f1_v2 SAMN13957875 PRJNA727343 2021-05-26
133 human (NA18906.pat 2021)[IGV] Homo sapiens GCA_018503285.1_NA18906.alt.pat.f1_v2 SAMN13957875 PRJNA727342 2021-05-26
134 human (NA19240.mat 2021)[IGV] Homo sapiens GCA_018503275.1_NA19240.pri.mat.f1_v2 SAMN03838746 PRJNA727341 2021-05-26
135 human (NA19240.pat 2021)[IGV] Homo sapiens GCA_018503265.1_NA19240.alt.pat.f1_v2 SAMN03838746 PRJNA727340 2021-05-26
136 human (NA20129.mat 2021)[IGV] Homo sapiens GCA_018504635.1_NA20129.pri.mat.f1_v2 SAMN13207712 PRJNA727367 2021-05-26
137 human (NA20129.pat 2021)[IGV] Homo sapiens GCA_018504625.1_NA20129.alt.pat.f1_v2 SAMN13207712 PRJNA727366 2021-05-26
138 human (NA21309.mat 2021)[IGV] Homo sapiens GCA_018504655.1_NA21309.pri.mat.f1_v2 SAMN11308573 PRJNA727365 2021-05-26
139 human (NA21309.pat 2021)[IGV] Homo sapiens GCA_018504665.1_NA21309.alt.pat.f1_v2 SAMN11308573 PRJNA727364 2021-05-26
140 human (NA24385 2024)[IGV] Homo sapiens GCA_018852605.3_Q100_hg002v1.0.1.pat SAMN03283347 PRJNA727430 2024-07-19
141 human (NA24385 2024)[IGV] Homo sapiens GCA_018852615.3_Q100_hg002v1.0.1.mat SAMN03283347 PRJNA727431 2024-07-18
142 human (NA24385 HG002 alt pat 2023)[IGV] Homo sapiens GCA_018852605.2_ASM1885260v2 SAMN03283347 PRJNA727430 2023-12-13
143 human (NA24385 HG002 pri mat 2023)[IGV] Homo sapiens GCA_018852615.2_Q100_hg002v1.0.1.mat SAMN03283347 PRJNA727431 2023-12-14
144 human (NA24631.mat 2021)[IGV] Homo sapiens GCA_018506965.1_HG005.pri.mat.f1_v2 SAMN03283350 PRJNA727429 2021-05-26
145 human (NA24631.pat 2021)[IGV] Homo sapiens GCA_018506945.1_HG005.alt.pat.f1_v2 SAMN03283350 PRJNA727428 2021-05-26
146 human (WGS:JACSEW01 2021 alternate hap)[IGV] Homo sapiens GCA_016700455.2_mHomSap3.pat SAMN12568975 PRJNA562022 2021-01-19
147 lesser dwarf lemur[IGV] Cheirogaleus medius GCA_004024725.1_CheMed_v1_BIUU SAMN07678072 PRJNA399382 2019-01-15
148 liontail macaque (KIZ-2021_14 2022)[IGV] Macaca silenus GCA_023807365.1_ASM2380736v1 SAMN23575345 PRJNA785018 2022-06-20
149 Ma's night monkey (86115 2017)[IGV] Aotus nancymaae GCF_000952055.2_Anan_2.0 SAMN03121886 PRJNA251539 2017-06-09
150 Ma's night monkey (86718 primary hap 2023)[IGV] Aotus nancymaae GCF_030222135.1_86718_ANA_hifiasm-v0.15.2.pri SAMN30617512 PRJNA941351 2023-06-07
151 mandrill (KIZ-2021_16 2022)[IGV] Mandrillus sphinx GCA_023783085.1_ASM2378308v1 SAMN23575347 PRJNA785018 2022-06-17
152 mantled guereza (KIZ-2021_5 2022)[IGV] Colobus guereza GCA_021498455.1_ASM2149845v1 SAMN23575336 PRJNA785018 2022-01-19
153 mantled howler monkey[IGV] Alouatta palliata GCA_004027835.1_AloPal_v1_BIUU SAMN07678036 PRJNA399372 2019-01-16
154 Midas tamarin (KIZ-2021_24 2022)[IGV] Saguinus midas GCA_021498475.1_ASM2149847v1 SAMN23575355 PRJNA785018 2022-01-19
155 Mittermeier's mouse lemur (MBB011 2019)[IGV] Microcebus mittermeieri GCA_008750955.1_Mmit_1.0 SAMN10707781 PRJNA512515 2019-09-30
156 Moholi bushbaby (KIZ-2021_8 2022)[IGV] Galago moholi GCA_023783435.1_ASM2378343v1 SAMN23575339 PRJNA785018 2022-06-17
157 mongoose lemur (Sample1262 2023)[IGV] Eulemur mongoz GCA_028534055.1_Eulemur_mongoz_HiC SAMN14122068 PRJNA512907 2023-02-09
158 northern giant mouse lemur (DLC2301 2019)[IGV] Mirza zaza GCA_008750895.1_Mzaz_1.0 SAMN10707785 PRJNA512515 2019-09-30
159 northern rufous mouse lemur (RMR71 2019)[IGV] Microcebus tavaratra GCA_008750935.1_Mtav_1.0 SAMN10707784 PRJNA512515 2019-09-30
160 northern white-cheeked gibbon (2019 U. Washington)[IGV] Nomascus leucogenys GCF_006542625.1_Asia_NLE_v1 SAMN11124083 PRJNA369439 2019-07-02
161 olive baboon (2019 UCSF)[IGV] Papio anubis GCF_008728515.1_Panubis1.0 SAMN11179045 PRJNA527874 2019-10-02
162 Panamanian white-faced capuchin[IGV] Cebus imitator GCF_001604975.1_Cebus_imitator-1.0 SAMN04522148 PRJNA298580 2016-04-04
163 Pere David's macaque[IGV] Macaca thibetana thibetana GCF_024542745.1_ASM2454274v1 SAMN27068423 PRJNA821381 2022-08-09
164 Phayre's leaf monkey (KIZ-2021_27 2022)[IGV] Trachypithecus phayrei crepuscula GCA_023762245.1_ASM2376224v1 SAMN23575358 PRJNA785018 2022-06-17
165 Philippine tarsier[IGV] Carlito syrichta GCF_000164805.1_Tarsius_syrichta-2.0.1 SAMN02445010 PRJNA20339 2013-09-18
166 pig-tailed macaque[IGV] Macaca nemestrina GCF_000956065.1_Mnem_1.0 SAMN03121842 PRJNA251427 2015-03-19
167 pileated gibbon (KIZ-2021_10 2022)[IGV] Hylobates pileatus GCA_021498465.1_ASM2149846v1 SAMN23575341 PRJNA785018 2022-01-19
168 proboscis monkey[IGV] Nasalis larvatus GCA_004027105.1_NasLar_v1_BIUU SAMN07678099 PRJNA399408 2019-01-16
169 pygmy chimpanzee (maternal 2024)[IGV] Pan paniscus GCA_028858845.2_NHGRI_mPanPan1-v2.0_mat SAMN13935689 PRJNA916735 2024-01-08
170 pygmy chimpanzee (Mhudiblu Carbone 601152 2020)[IGV] Pan paniscus GCF_013052645.1_Mhudiblu_PPA_v0 SAMN11123633 PRJNA526933 2020-05-15
171 pygmy chimpanzee (paternal 2024)[IGV] Pan paniscus GCA_028858825.2_NHGRI_mPanPan1-v2.0_pat SAMN13935689 PRJNA916734 2024-01-05
172 pygmy chimpanzee (Ulindi refseq 2015)[IGV] Pan paniscus GCF_000258655.2_panpan1.1 SAMEA1029457 PRJNA49285 2015-08-18
173 pygmy chimpanzee (v2 primary hap 2024 genbank)[IGV] Pan paniscus GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri SAMN13935689 PRJNA942951 2024-01-08
174 pygmy chimpanzee (v2 primary hap 2024 refseq)[IGV] Pan paniscus GCF_029289425.2_NHGRI_mPanPan1-v2.0_pri SAMN13935689 PRJNA942951 2024-01-08
175 red guenon (BS28 Broad 2019)[IGV] Erythrocebus patas GCA_004027335.1_EryPat_v1_BIUU SAMN07678082 PRJNA399392 2019-01-16
176 red guenon (KIZ-2021_7 2022)[IGV] Erythrocebus patas GCA_023783455.1_ASM2378345v1 SAMN23575338 PRJNA785018 2022-06-17
177 red shanked douc langur[IGV] Pygathrix nemaeus GCA_004024825.1_PygNem_v1_BIUU SAMN07678108 PRJNA399415 2019-01-15
178 reddish-gray mouse lemur (RMR66 2019)[IGV] Microcebus griseorufus GCA_008750995.1_Mgri_1.0 SAMN10707780 PRJNA512515 2019-09-30
179 Rhesus monkey (2019 U. Washington)[IGV] Macaca mulatta GCF_003339765.1_Mmul_10 SAMN09435472 PRJNA476474 2019-02-13
180 ring-tailed lemur (KIZ-2021_28 2022)[IGV] Lemur catta GCA_023759835.1_ASM2375983v1 SAMN23575359 PRJNA785018 2022-06-17
181 ring-tailed lemur (mLemCat1 2021)[IGV] Lemur catta GCF_020740605.2_mLemCat1.pri SAMN12621102 PRJNA561949 2021-11-04
182 ring-tailed lemur (mLemCat1 alternate hap 2021)[IGV] Lemur catta GCA_020740595.1_mLemCat1.alt SAMN12621102 PRJNA561950 2021-11-03
183 ruffed lemur (Sample0354 2023)[IGV] Varecia variegata GCA_028533085.1_Varecia_variegata_HiC SAMN29758785 PRJNA512907 2023-02-10
184 Sclater's lemur (Harlow 2015)[IGV] Eulemur flavifrons GCA_001262665.1_Eflavifronsk33QCA SAMN03699688 PRJNA284191 2015-08-06
185 siamang (Jambi alternate hap 2024)[IGV] Symphalangus syndactylus GCA_028878085.3_NHGRI_mSymSyn1-v2.0_alt SAMN30216103 PRJNA916728 2024-01-05
186 siamang (KIZ-2021_26 2022)[IGV] Symphalangus syndactylus GCA_023761135.1_ASM2376113v1 SAMN23575357 PRJNA785018 2022-06-17
187 siamang (v2 Jambi alternate hap 2024)[IGV] Symphalangus syndactylus GCA_028878085.2_NHGRI_mSymSyn1-v2.0_alt SAMN30216103 PRJNA916728 2024-01-05
188 siamang (v2.1 Jambi primary hap 2024 refseq)[IGV] Symphalangus syndactylus GCF_028878055.3_NHGRI_mSymSyn1-v2.1_pri SAMN30216103 PRJNA916729 2024-01-05
189 silvery gibbon (v3 HMO894 2021 UC Santa Cruz)[IGV] Hylobates moloch GCF_009828535.3_HMol_V3 SAMN12851060 PRJNA575281 2021-11-10
190 slender loris (KIZ-2021_12 2022)[IGV] Loris tardigradus GCA_023783135.1_ASM2378313v1 SAMN23575343 PRJNA785018 2022-06-17
191 slow loris (alternate hap 2022)[IGV] Nycticebus coucang GCA_027406535.1_mNycCou1.alt SAMN28408555 PRJNA838347 2022-12-27
192 slow loris (primary hap 2022)[IGV] Nycticebus coucang GCF_027406575.1_mNycCou1.pri SAMN28408555 PRJNA838348 2022-12-28
193 small-eared galago[IGV] Otolemur garnettii GCF_000181295.1_OtoGar3 SAMN02981229 PRJNA16955 2011-03-16
194 sooty mangabey[IGV] Cercocebus atys GCF_000955945.1_Caty_1.0 SAMN03379531 PRJNA157077 2015-03-19
195 southern white-cheeked gibbon (KIZ-2021_17 2022)[IGV] Nomascus siki GCA_023783065.1_ASM2378306v1 SAMN23575348 PRJNA785018 2022-06-17
196 Sumatran orangutan (Susie 2018 refseq)[IGV] Pongo abelii GCF_002880775.1_Susie_PABv2 SAMN06275555 PRJNA369439 2018-01-19
197 Sumatran orangutan (v2 AG06213 alternate hap 2024)[IGV] Pongo abelii GCA_028885685.2_NHGRI_mPonAbe1-v2.0_alt SAMN10521808 PRJNA916741 2024-01-05
198 Sumatran orangutan (v2 AG06213 primary hap 2024 genbank)[IGV] Pongo abelii GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri SAMN10521808 PRJNA916743 2024-01-05
199 Sumatran orangutan (v2 AG06213 primary hap 2024 refseq)[IGV] Pongo abelii GCF_028885655.2_NHGRI_mPonAbe1-v2.0_pri SAMN10521808 PRJNA916743 2024-01-05
200 Sykes' monkey (KIZ-2021_3 2022)[IGV] Cercopithecus albogularis GCA_023783535.1_ASM2378353v1 SAMN23575334 PRJNA785018 2022-06-17
201 tamarin[IGV] Saguinus imperator GCA_004024885.1_SagImp_v1_BIUU SAMN07678110 PRJNA399417 2019-01-15
202 tufted capuchin (KIZ-2021_25 2022)[IGV] Sapajus apella GCA_023762875.2_ASM2376287v2 SAMN23575356 PRJNA785018 2022-06-17
203 tufted capuchin (Saskatoon/1434 2019)[IGV] Sapajus apella GCF_009761245.1_GSC_monkey_1.0 SAMN13265339 PRJNA588076 2019-12-17
204 Ugandan red Colobus (RC106 v5 2019)[IGV] Piliocolobus tephrosceles GCF_002776525.5_ASM277652v5 SAMN07735529 PRJNA413051 2019-12-12
205 western lowland gorilla (Kamilah 2019)[IGV] Gorilla gorilla gorilla GCF_008122165.1_Kamilah_GGO_v0 SAMN11078986 PRJNA369439 2019-08-28
206 western lowland gorilla (maternal KB3781 2024)[IGV] Gorilla gorilla gorilla GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat SAMN04003007 PRJNA916732 2024-01-08
207 western lowland gorilla (paternal KB3781 2024)[IGV] Gorilla gorilla gorilla GCA_028885475.2_NHGRI_mGorGor1-v2.0_pat SAMN04003007 PRJNA916733 2024-01-08
208 western lowland gorilla (v2 KB3781 2024 genbank)[IGV] Gorilla gorilla gorilla GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri SAMN04003007 PRJNA942267 2024-01-08
209 western lowland gorilla (v2 KB3781 2024 refseq)[IGV] Gorilla gorilla gorilla GCF_029281585.2_NHGRI_mGorGor1-v2.0_pri SAMN04003007 PRJNA942267 2024-01-08
210 white-faced saki (BS33 Broad 2019)[IGV] Pithecia pithecia GCA_004026645.1_PitPit_v1_BIUU SAMN07678106 PRJNA399413 2019-01-16
211 white-faced saki (KIZ-2021_20 2022)[IGV] Pithecia pithecia GCA_023779675.1_ASM2377967v1 SAMN23575351 PRJNA785018 2022-06-17
212 white-fronted capuchin (BS31 Broad 2019)[IGV] Cebus albifrons GCA_004027755.1_CebAlb_v1_BIUU SAMN07678068 PRJNA399379 2019-01-16
213 white-fronted capuchin (KIZ-2021_2 2022)[IGV] Cebus albifrons GCA_023783575.1_ASM2378357v1 SAMN23575333 PRJNA785018 2022-06-17
214 white-tufted-ear marmoset (cj1700 2020)[IGV] Callithrix jacchus GCF_009663435.1_Callithrix_jacchus_cj1700_1.1 n/a PRJNA566173 2020-05-22
215 white-tufted-ear marmoset (maternal 2020)[IGV] Callithrix jacchus GCA_011078405.1_mCalJac1.mat SAMN12368443 PRJNA558086 2020-03-10
216 white-tufted-ear marmoset (paternal X 2020)[IGV] Callithrix jacchus GCA_011100555.1_mCalJac1.pat.X SAMN12368443 PRJNA597600 2020-03-10
217 white-tufted-ear marmoset (v1.2 2021 refseq)[IGV] Callithrix jacchus GCF_011100555.1_mCalJa1.2.pat.X SAMN12368443 PRJNA597600 2021-04-28
218 white-tufted-ear marmoset (v1.2 paternal 2021)[IGV] Callithrix jacchus GCA_011100535.2_mCalJac1.2.pat SAMN12368443 PRJNA558087 2021-04-28

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 218 assemblies assembly stats track stats
Mammals 564 assemblies assembly stats track stats
Birds 393 assemblies assembly stats track stats
Fishes 419 assemblies assembly stats track stats
other vertebrates 269 assemblies assembly stats track stats
Invertebrates 1103 assemblies assembly stats track stats
Plants 303 assemblies assembly stats track stats
Fungi 899 assemblies assembly stats track stats
Viruses 287 assemblies assembly stats track stats
Bacteria 107 assemblies assembly stats track stats
legacy/superseded 522 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 952 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats
BRC - BRC Analytics - Bioinformatics Research Center 769 assemblies assembly stats track stats