HPRC - Human Pangenome Reference Consortium assembly hub

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This assembly hub contains assemblies released by the Human Pangenome Reference Consortium.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statistics, track statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser[IGV browser]		 scientific name
and data download		 NCBI assembly BioSample BioProject assembly date,
source link
1 human (HG00438.mat 2021)[IGV] Homo sapiens GCA_018471515.1_HG00438.pri.mat.f1_v2 SAMN17861652 PRJNA726273 2021-05-24
2 human (HG00438.pat 2021)[IGV] Homo sapiens GCA_018472595.1_HG00438.alt.pat.f1_v2 SAMN17861652 PRJNA726272 2021-05-24
3 human (HG00621.mat 2021)[IGV] Homo sapiens GCA_018472605.1_HG00621.pri.mat.f1_v2 SAMN17861653 PRJNA726275 2021-05-24
4 human (HG00621.pat 2021)[IGV] Homo sapiens GCA_018472575.1_HG00621.alt.pat.f1_v2 SAMN17861653 PRJNA726274 2021-05-24
5 human (HG00673.mat 2021)[IGV] Homo sapiens GCA_018472565.1_HG00673.pri.mat.f1_v2 SAMN17861654 PRJNA726271 2021-05-24
6 human (HG00673.pat 2021)[IGV] Homo sapiens GCA_018472585.1_HG00673.alt.pat.f1_v2 SAMN17861654 PRJNA726270 2021-05-24
7 human (HG00733.mat 2021)[IGV] Homo sapiens GCA_018506975.1_HG00733.pri.mat.f1_v2 SAMN00006581 PRJNA727433 2021-05-26
8 human (HG00733.pat 2021)[IGV] Homo sapiens GCA_018506955.1_HG00733.alt.pat.f1_v2 SAMN00006581 PRJNA727432 2021-05-26
9 human (HG00735.mat 2021)[IGV] Homo sapiens GCA_018472765.1_HG00735.pri.mat.f1_v2 SAMN17861655 PRJNA726279 2021-05-24
10 human (HG00735.pat 2021)[IGV] Homo sapiens GCA_018472715.1_HG00735.alt.pat.f1_v2 SAMN17861655 PRJNA726278 2021-05-24
11 human (HG00741.mat 2021)[IGV] Homo sapiens GCA_018471095.1_HG00741.pri.mat.f1_v2 SAMN17861656 PRJNA726225 2021-05-24
12 human (HG00741.pat 2021)[IGV] Homo sapiens GCA_018471105.1_HG00741.alt.pat.f1_v2 SAMN17861656 PRJNA726224 2021-05-24
13 human (HG01071.mat 2021)[IGV] Homo sapiens GCA_018472685.1_HG01071.pri.mat.f1_v2 SAMN17861657 PRJNA726277 2021-05-24
14 human (HG01071.pat 2021)[IGV] Homo sapiens GCA_018472725.1_HG01071.alt.pat.f1_v2 SAMN17861657 PRJNA726276 2021-05-24
15 human (HG01106.mat 2021)[IGV] Homo sapiens GCA_018471345.1_HG01106.pri.mat.f1_v2 SAMN17861658 PRJNA726229 2021-05-24
16 human (HG01106.pat 2021)[IGV] Homo sapiens GCA_018471075.1_HG01106.alt.pat.f1_v2 SAMN17861658 PRJNA726228 2021-05-24
17 human (HG01109.mat 2021)[IGV] Homo sapiens GCA_018504365.1_HG01109.pri.mat.f1_v2 SAMN12162846 PRJNA727363 2021-05-26
18 human (HG01109.pat 2021)[IGV] Homo sapiens GCA_018504645.1_HG01109.alt.pat.f1_v2 SAMN12162846 PRJNA727362 2021-05-26
19 human (HG01123.mat 2021)[IGV] Homo sapiens GCA_018469665.1_HG01123.pri.mat.f1_v2.1 SAMN17861232 PRJNA725610 2021-05-24
20 human (HG01123.pat 2021)[IGV] Homo sapiens GCA_018469695.1_HG01123.alt.pat.f1_v2.1 SAMN17861232 PRJNA725609 2021-05-24
21 human (HG01175.mat 2021)[IGV] Homo sapiens GCA_018471085.1_HG01175.pri.mat.f1_v2 SAMN17861659 PRJNA726227 2021-05-24
22 human (HG01175.pat 2021)[IGV] Homo sapiens GCA_018471065.1_HG01175.alt.pat.f1_v2 SAMN17861659 PRJNA726226 2021-05-24
23 human (HG01243.mat 2021)[IGV] Homo sapiens GCA_018504375.1_HG01243.pri.mat.f1_v2 SAMN13957917 PRJNA727361 2021-05-26
24 human (HG01243.pat 2021)[IGV] Homo sapiens GCA_018504045.1_HG01243.alt.pat.f1_v2 SAMN13957917 PRJNA727360 2021-05-26
25 human (HG01258.mat 2021)[IGV] Homo sapiens GCA_018469405.1_HG01258.pri.mat.f1_v2 SAMN17861233 PRJNA725606 2021-05-24
26 human (HG01258.pat 2021)[IGV] Homo sapiens GCA_018469675.1_HG01258.alt.pat.f1_v2 SAMN17861233 PRJNA725605 2021-05-24
27 human (HG01358.mat 2021)[IGV] Homo sapiens GCA_018469865.1_HG01358.pri.mat.f1_v2.1 SAMN17861234 PRJNA725612 2021-05-24
28 human (HG01358.pat 2021)[IGV] Homo sapiens GCA_018469965.1_HG01358.alt.pat.f1_v2.1 SAMN17861234 PRJNA725611 2021-05-24
29 human (HG01361.mat 2021)[IGV] Homo sapiens GCA_018469685.1_HG01361.pri.mat.f1_v2 SAMN17861235 PRJNA725608 2021-05-24
30 human (HG01361.pat 2021)[IGV] Homo sapiens GCA_018469705.1_HG01361.alt.pat.f1_v2 SAMN17861235 PRJNA725607 2021-05-24
31 human (HG01891.mat 2021)[IGV] Homo sapiens GCA_018467155.1_HG01891.pri.mat.f1_v2 SAMN17861236 PRJNA723023 2021-05-24
32 human (HG01891.pat 2021)[IGV] Homo sapiens GCA_018467165.1_HG01891.alt.pat.f1_v2 SAMN17861236 PRJNA723022 2021-05-24
33 human (HG01928.mat 2021)[IGV] Homo sapiens GCA_018472695.1_HG01928.pri.mat.f1_v2 SAMN17861660 PRJNA726174 2021-05-24
34 human (HG01928.pat 2021)[IGV] Homo sapiens GCA_018472705.1_HG01928.alt.pat.f1_v2 SAMN17861660 PRJNA726173 2021-05-24
35 human (HG01952.mat 2021)[IGV] Homo sapiens GCA_018471545.1_HG01952.pri.mat.f1_v2 SAMN17861661 PRJNA726231 2021-05-24
36 human (HG01952.pat 2021)[IGV] Homo sapiens GCA_018471555.1_HG01952.alt.pat.f1_v2 SAMN17861661 PRJNA726230 2021-05-24
37 human (HG01978.mat 2021)[IGV] Homo sapiens GCA_018472865.1_HG01978.pri.mat.f1_v2 SAMN17861662 PRJNA726176 2021-05-24
38 human (HG01978.pat 2021)[IGV] Homo sapiens GCA_018472845.1_HG01978.alt.pat.f1_v2 SAMN17861662 PRJNA726175 2021-05-24
39 human (HG02055.mat 2021)[IGV] Homo sapiens GCA_018506125.1_HG02055.pri.mat.f1_v2 SAMN12162856 PRJNA727422 2021-05-26
40 human (HG02055.pat 2021)[IGV] Homo sapiens GCA_018505855.1_HG02055.alt.pat.f1_v2 SAMN12162856 PRJNA727421 2021-05-26
41 human (HG02080.mat 2021)[IGV] Homo sapiens GCA_018504085.1_HG02080.pri.mat.f1_v2 SAMN13957942 PRJNA727359 2021-05-26
42 human (HG02080.pat 2021)[IGV] Homo sapiens GCA_018504055.1_HG02080.alt.pat.f1_v2 SAMN13957942 PRJNA727358 2021-05-26
43 human (HG02109.mat 2021)[IGV] Homo sapiens GCA_018505825.1_HG02109.pri.mat.f1_v2 SAMN13958415 PRJNA727418 2021-05-26
44 human (HG02109.pat 2021)[IGV] Homo sapiens GCA_018505865.1_HG02109.alt.pat.f1_v2 SAMN13958415 PRJNA727417 2021-05-26
45 human (HG02145.mat 2021)[IGV] Homo sapiens GCA_018852585.1_HG02145.pri.mat.f1_v2 SAMN13961514 PRJNA727416 2021-06-11
46 human (HG02145.pat 2021)[IGV] Homo sapiens GCA_018852595.1_HG02145.alt.pat.f1_v2 SAMN13961514 PRJNA727415 2021-06-11
47 human (HG02148.mat 2021)[IGV] Homo sapiens GCA_018471535.1_HG02148.pri.mat.f1_v2 SAMN17861663 PRJNA726233 2021-05-24
48 human (HG02148.pat 2021)[IGV] Homo sapiens GCA_018471525.1_HG02148.alt.pat.f1_v2 SAMN17861663 PRJNA726232 2021-05-24
49 human (HG02257.mat 2021)[IGV] Homo sapiens GCA_018466845.1_HG02257.pri.mat.f1_v2 SAMN17861237 PRJNA723017 2021-05-24
50 human (HG02257.pat 2021)[IGV] Homo sapiens GCA_018466835.1_HG02257.alt.pat.f1_v2 SAMN17861237 PRJNA723016 2021-05-24
51 human (HG02486.mat 2021)[IGV] Homo sapiens GCA_018467015.1_HG02486.pri.mat.f1_v2 SAMN17861238 PRJNA723021 2021-05-24
52 human (HG02486.pat 2021)[IGV] Homo sapiens GCA_018467005.1_HG02486.alt.pat.f1_v2 SAMN17861238 PRJNA723020 2021-05-24
53 human (HG02559.mat 2021)[IGV] Homo sapiens GCA_018466985.1_HG02559.pri.mat.f1_v2 SAMN17861239 PRJNA723019 2021-05-24
54 human (HG02559.pat 2021)[IGV] Homo sapiens GCA_018466855.1_HG02559.alt.pat.f1_v2 SAMN17861239 PRJNA723018 2021-05-24
55 human (HG02572.mat 2021)[IGV] Homo sapiens GCA_018470445.1_HG02572.pri.mat.f1_v2 SAMN17861240 PRJNA725863 2021-05-24
56 human (HG02572.pat 2021)[IGV] Homo sapiens GCA_018470435.1_HG02572.alt.pat.f1_v2 SAMN17861240 PRJNA725862 2021-05-24
57 human (HG02622.mat 2021)[IGV] Homo sapiens GCA_018469875.1_HG02622.pri.mat.f1_v2 SAMN17861664 PRJNA725855 2021-05-24
58 human (HG02622.pat 2021)[IGV] Homo sapiens GCA_018469925.1_HG02622.alt.pat.f1_v2 SAMN17861664 PRJNA725854 2021-05-24
59 human (HG02630.mat 2021)[IGV] Homo sapiens GCA_018469955.1_HG02630.pri.mat.f1_v2 SAMN17861665 PRJNA725857 2021-05-24
60 human (HG02630.pat 2021)[IGV] Homo sapiens GCA_018469945.1_HG02630.alt.pat.f1_v2 SAMN17861665 PRJNA725856 2021-05-24
61 human (HG02717.mat 2021)[IGV] Homo sapiens GCA_018469935.1_HG02717.pri.mat.f1_v2 SAMN17861666 PRJNA725859 2021-05-24
62 human (HG02717.pat 2021)[IGV] Homo sapiens GCA_018470425.1_HG02717.alt.pat.f1_v2 SAMN17861666 PRJNA725858 2021-05-24
63 human (HG02723.mat 2021)[IGV] Homo sapiens GCA_018504065.1_HG02723.pri.mat.f1_v2 SAMN13958364 PRJNA727349 2021-05-26
64 human (HG02723.pat 2021)[IGV] Homo sapiens GCA_018504075.1_HG02723.alt.pat.f1_v2 SAMN13958364 PRJNA727348 2021-05-26
65 human (HG02818.mat 2021)[IGV] Homo sapiens GCA_018503585.1_HG02818.pri.mat.f1_v2 SAMN05603745 PRJNA727347 2021-05-26
66 human (HG02818.pat 2021)[IGV] Homo sapiens GCA_018503575.1_HG02818.alt.pat.f1_v2 SAMN05603745 PRJNA727346 2021-05-26
67 human (HG02886.mat 2021)[IGV] Homo sapiens GCA_018470455.1_HG02886.pri.mat.f1_v2 SAMN17861667 PRJNA725861 2021-05-24
68 human (HG02886.pat 2021)[IGV] Homo sapiens GCA_018470465.1_HG02886.alt.pat.f1_v2 SAMN17861667 PRJNA725860 2021-05-24
69 human (HG03098.mat 2021)[IGV] Homo sapiens GCA_018506165.1_HG03098.pri.mat.f1_v2 SAMN13957944 PRJNA727424 2021-05-26
70 human (HG03098.pat 2021)[IGV] Homo sapiens GCA_018506155.1_HG03098.alt.pat.f1_v2 SAMN13957944 PRJNA727423 2021-05-26
71 human (HG03453.mat 2021)[IGV] Homo sapiens GCA_018472855.1_HG03453.pri.mat.f1_v2 SAMN17861668 PRJNA726180 2021-05-24
72 human (HG03453.pat 2021)[IGV] Homo sapiens GCA_018473305.1_HG03453.alt.pat.f1_v2 SAMN17861668 PRJNA726179 2021-05-24
73 human (HG03486.mat 2021)[IGV] Homo sapiens GCA_018503525.1_HG03486.pri.mat.f1_v2 SAMN08723473 PRJNA727345 2021-05-26
74 human (HG03486.pat 2021)[IGV] Homo sapiens GCA_018503245.1_HG03486.alt.pat.f1_v2 SAMN08723473 PRJNA727344 2021-05-26
75 human (HG03492.mat 2021)[IGV] Homo sapiens GCA_018505845.1_HG03492.pri.mat.f1_v2 SAMN13958363 PRJNA727420 2021-05-26
76 human (HG03492.pat 2021)[IGV] Homo sapiens GCA_018505835.1_HG03492.alt.pat.f1_v2 SAMN13958363 PRJNA727419 2021-05-26
77 human (HG03516.mat 2021)[IGV] Homo sapiens GCA_018469425.1_HG03516.pri.mat.f1_v2 SAMN17861241 PRJNA725604 2021-05-24
78 human (HG03516.pat 2021)[IGV] Homo sapiens GCA_018469415.1_HG03516.alt.pat.f1_v2 SAMN17861241 PRJNA725603 2021-05-24
79 human (HG03540.mat 2021)[IGV] Homo sapiens GCA_018473295.1_HG03540.pri.mat.f1_v2 SAMN17861670 PRJNA726182 2021-05-24
80 human (HG03540.pat 2021)[IGV] Homo sapiens GCA_018473315.1_HG03540.alt.pat.f1_v2 SAMN17861670 PRJNA726181 2021-05-24
81 human (HG03579.mat 2021)[IGV] Homo sapiens GCA_018472825.1_HG03579.pri.mat.f1_v2 SAMN17861671 PRJNA726178 2021-05-24
82 human (HG03579.pat 2021)[IGV] Homo sapiens GCA_018472835.1_HG03579.alt.pat.f1_v2 SAMN17861671 PRJNA726177 2021-05-24
83 human (NA18906.mat 2021)[IGV] Homo sapiens GCA_018503255.1_NA18906.pri.mat.f1_v2 SAMN13957875 PRJNA727343 2021-05-26
84 human (NA18906.pat 2021)[IGV] Homo sapiens GCA_018503285.1_NA18906.alt.pat.f1_v2 SAMN13957875 PRJNA727342 2021-05-26
85 human (NA19240.mat 2021)[IGV] Homo sapiens GCA_018503275.1_NA19240.pri.mat.f1_v2 SAMN03838746 PRJNA727341 2021-05-26
86 human (NA19240.pat 2021)[IGV] Homo sapiens GCA_018503265.1_NA19240.alt.pat.f1_v2 SAMN03838746 PRJNA727340 2021-05-26
87 human (NA20129.mat 2021)[IGV] Homo sapiens GCA_018504635.1_NA20129.pri.mat.f1_v2 SAMN13207712 PRJNA727367 2021-05-26
88 human (NA20129.pat 2021)[IGV] Homo sapiens GCA_018504625.1_NA20129.alt.pat.f1_v2 SAMN13207712 PRJNA727366 2021-05-26
89 human (NA21309.mat 2021)[IGV] Homo sapiens GCA_018504655.1_NA21309.pri.mat.f1_v2 SAMN11308573 PRJNA727365 2021-05-26
90 human (NA21309.pat 2021)[IGV] Homo sapiens GCA_018504665.1_NA21309.alt.pat.f1_v2 SAMN11308573 PRJNA727364 2021-05-26
91 human (NA24385.mat 2022)[IGV] Homo sapiens GCA_021951015.1_HG002.mat.cur.20211005 SAMN03283347 PRJNA794175 2022-02-04
92 human (NA24385.pat 2022)[IGV] Homo sapiens GCA_021950905.1_HG002.pat.cur.20211005 SAMN03283347 PRJNA794172 2022-02-04
93 human (NA24385.mat 2021)[IGV] Homo sapiens GCA_018852615.1_HG002.pri.mat.f1_v2 SAMN03283347 PRJNA727431 2021-06-11
94 human (NA24385.pat 2021)[IGV] Homo sapiens GCA_018852605.1_HG002.alt.pat.f1_v2 SAMN03283347 PRJNA727430 2021-06-11
95 human (NA24631.mat 2021)[IGV] Homo sapiens GCA_018506965.1_HG005.pri.mat.f1_v2 SAMN03283350 PRJNA727429 2021-05-26
96 human (NA24631.pat 2021)[IGV] Homo sapiens GCA_018506945.1_HG005.alt.pat.f1_v2 SAMN03283350 PRJNA727428 2021-05-26

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 200 assemblies assembly stats track stats
Mammals 473 assemblies assembly stats track stats
Birds 298 assemblies assembly stats track stats
Fishes 335 assemblies assembly stats track stats
other vertebrates 164 assemblies assembly stats track stats
Invertebrates 625 assemblies assembly stats track stats
Plants 247 assemblies assembly stats track stats
Fungi 598 assemblies assembly stats track stats
Viruses 264 assemblies assembly stats track stats
Bacteria 73 assemblies assembly stats track stats
legacy/superseded 370 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 472 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats