Fish Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of fish only.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser
[IGV browser]
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
1 Acadian redfish (fSebFas1 primary hap 2024)[IGV] Sebastes fasciatus GCA_043250625.1_fSebFas1.pri SAMN43039489 PRJNA1144512 2024-10-17
2 alligator pipefish (LvHL_M 2021)[IGV] Syngnathoides biaculeatus GCF_019802595.1_ASM1980259v1 SAMN16446372 PRJNA669508 2021-09-09
3 allis shad[IGV] Alosa alosa GCF_017589495.1_AALO_Geno_1.1 SAMN16418510 PRJNA668689 2021-03-30
4 Amazon molly[IGV] Poecilia formosa GCF_000485575.1_Poecilia_formosa-5.1.2 SAMN02981564 PRJNA89109 2013-10-28
5 amberjack S.aureovittata (China HTS-2021-v1 2021)[IGV] Seriola aureovittata GCF_021018895.1_ASM2101889v1 SAMN20750612 PRJNA754209 2021-12-02
6 American shad (fAloSap1 alternate hap 2021)[IGV] Alosa sapidissima GCA_018492705.1_fAloSap1.alt SAMN18857608 PRJNA728146 2021-05-24
7 American shad (fAloSap1 primary hap 2021)[IGV] Alosa sapidissima GCF_018492685.1_fAloSap1.pri SAMN18857608 PRJNA728145 2021-05-25
8 Andian cavefish (hap1 2023)[IGV] Trichomycterus rosablanca GCF_030014385.1_fTriRos1.hap1 SAMN32755940 PRJNA924296 2023-05-16
9 annual killifish[IGV] Austrofundulus limnaeus GCF_001266775.1_Austrofundulus_limnaeus-1.0 SAMN03490872 PRJNA280995 2015-07-28
10 Antarctic jonasfish (primary hap 2024)[IGV] Notolepis coatsorum GCA_963971535.1_fNotCoa1.1 SAMEA8748806 PRJEB73539 2024-03-07
11 Antarctic lanternfish (alternate hap 2023)[IGV] Electrona antarctica GCA_951214905.1_fEleAnt2.1_alternate_haplotype SAMEA8748807 PRJEB61833 2023-05-08
12 Antarctic lanternfish (primary hap 2023)[IGV] Electrona antarctica GCA_951216825.1_fEleAnt2.1 SAMEA8748807 PRJEB61834 2023-05-11
13 Antarctic spiny plunderfish (primary hap 2020)[IGV] Harpagifer antarcticus GCA_902827135.1_fHarAnt1.1 SAMEA104132831 PRJEB37645 2020-04-15
14 Arctic char[IGV] Salvelinus sp. IW2-2015 GCF_002910315.2_ASM291031v2 SAMN06561764 PRJNA348349 2018-02-12
15 Arctic char (CBP00131 primary hap 2024)[IGV] Salvelinus alpinus oquassa GCA_036784965.1_fSalAlp2_p1.0 SAMN36900063 PRJNA1016485 2024-02-23
16 Aristotle's catfish (alternate hap 2022)[IGV] Silurus aristotelis GCA_946807865.1_fSilAri3.1_alternate_haplotype SAMEA12595289 PRJEB55687 2022-09-16
17 Aristotle's catfish (primary hap 2022)[IGV] Silurus aristotelis GCA_946808225.1_fSilAri3.1 SAMEA12595289 PRJEB55686 2022-09-15
18 Arkansas darter[IGV] Etheostoma cragini GCF_013103735.1_CSU_Ecrag_1.0 SAMN14351042 PRJNA611833 2020-05-15
19 arroyo chub (AC-1 alternate hap 2022)[IGV] Gila orcuttii GCA_026230005.1_fGilOrc1.0.hap1 SAMN31536034 PRJNA896189 2022-11-18
20 arroyo chub (AC-1 primary hap 2022)[IGV] Gila orcuttii GCA_026230025.1_fGilOrc1.0.hap2 SAMN31536034 PRJNA896188 2022-11-18
21 Asian bonytongue (2019)[IGV] Scleropages formosus GCF_900964775.1_fSclFor1.1 SAMEA4872123 PRJEB31995 2019-04-11
22 Asian bonytongue (alternate hap)[IGV] Scleropages formosus GCA_900964985.2_fSclFor1.1_alternate_haplotype SAMEA4872123 PRJEB31996 2019-04-11
23 Asian redtail catfish (EC202008001 2021)[IGV] Hemibagrus wyckioides GCF_019097595.1_SWU_Hwy_1.0 SAMN18644987 PRJNA720277 2021-07-06
24 Atlantic bluefin tuna (primary hap 2024)[IGV] Thunnus thynnus GCA_963924715.1_fThuThy2.1 SAMEA111406335 PRJEB72088 2024-01-29
25 Atlantic bluefin tuna (primary hap 2024)[IGV] Thunnus thynnus GCF_963924715.1_fThuThy2.1 SAMEA111406335 PRJEB72088 2024-01-29
26 Atlantic cod (2019)[IGV] Gadus morhua GCF_902167405.1_gadMor3.0 SAMEA5574046 PRJEB33455 2019-07-16
27 Atlantic cod (alternate hap)[IGV] Gadus morhua GCA_902167395.1_gadMor3.0_alternate_haplotype SAMEA5574046 PRJEB33454 2019-07-16
28 Atlantic halibut (2019 refseq)[IGV] Hippoglossus hippoglossus GCF_009819705.1_fHipHip1.pri SAMN12629501 PRJNA562001 2019-12-31
29 Atlantic halibut (alternate hap 2019)[IGV] Hippoglossus hippoglossus GCA_009819745.1_fHipHip1.alt SAMN12629501 PRJNA562002 2019-12-27
30 Atlantic herring (v2)[IGV] Clupea harengus GCF_900700415.2_Ch_v2.0.2 SAMEA5339254 PRJEB31270 2019-04-16
31 Atlantic horse mackerel (alternate hap 2021)[IGV] Trachurus trachurus GCA_905171655.2_fTraTra1.2_alternate_haplotype SAMEA7524396 PRJEB42173 2021-11-26
32 Atlantic horse mackerel (primary hap 2021)[IGV] Trachurus trachurus GCA_905171665.2_fTraTra1.2 SAMEA7524396 PRJEB42172 2021-11-26
33 Atlantic mackerel (primary hap 2023)[IGV] Scomber scombrus GCA_963691925.1_fScoSco1.1 SAMEA110450232 PRJEB70589 2023-12-07
34 Atlantic mackerel (primary hap 2023)[IGV] Scomber scombrus GCF_963691925.1_fScoSco1.1 SAMEA110450232 PRJEB70589 2023-12-07
35 Atlantic salmon (refseq 2021)[IGV] Salmo salar GCF_905237065.1_Ssal_v3.1 SAMEA8062739 PRJEB43080 2021-04-21
36 Atlantic salmon (Sally 2015)[IGV] Salmo salar GCF_000233375.1_ICSASG_v2 SAMN02749551 PRJNA72713 2015-06-10
37 Atlantic turbot (AOZZmale01 2020)[IGV] Scophthalmus maximus GCF_013347765.1_ASM1334776v1 SAMN14896287 PRJNA631898 2020-06-18
38 ballan wrasse (2016)[IGV] Labrus bergylta GCF_900080235.1_BallGen_V1 SAMEA3939555 PRJEB13687 2016-05-03
39 ballan wrasse (primary hap 2024 genbank)[IGV] Labrus bergylta GCA_963930695.1_fLabBer1.1 SAMEA111562158 PRJEB72177 2024-01-31
40 ballan wrasse (primary hap 2024 refseq)[IGV] Labrus bergylta GCF_963930695.1_fLabBer1.1 SAMEA111562158 PRJEB72177 2024-01-31
41 banded archerfish (alternate hap 2021)[IGV] Toxotes jaculatrix GCA_017976295.1_fToxJac2.alt SAMN18445299 PRJNA717045 2021-04-15
42 banded archerfish (primary hap 2021 refseq)[IGV] Toxotes jaculatrix GCF_017976425.1_fToxJac2.pri SAMN18445299 PRJNA717046 2021-04-15
43 banded killifish (hap1 2024)[IGV] Fundulus diaphanus GCA_037039145.1_fFunDia1.hap1 SAMN39736529 PRJNA1072162 2024-03-06
44 banded killifish (hap2 2024)[IGV] Fundulus diaphanus GCA_037038625.1_fFunDia1.hap2 SAMN39736529 PRJNA1072163 2024-03-06
45 barbel (alternate hap 2022)[IGV] Barbus barbus GCA_936446605.1_fBarBab1.1_alternate_haplotype SAMEA13335783 PRJEB52076 2022-04-16
46 barbel (primary hap 2022)[IGV] Barbus barbus GCA_936440315.1_fBarBab1.1 SAMEA13335783 PRJEB52077 2022-05-03
47 barramundi perch (ASB-BC8 2022)[IGV] Lates calcarifer GCF_001640805.2_TLL_Latcal_v3 SAMN04026617 PRJNA294489 2022-08-01
48 bicolor damselfish[IGV] Stegastes partitus GCF_000690725.1_Stegastes_partitus-1.0.2 SAMN02743342 PRJNA89147 2014-05-13
49 black goby (alternate hap 2023)[IGV] Gobius niger GCA_951799965.1_fGobNig1.1_alternate_haplotype SAMEA13854149 PRJEB62587 2023-05-27
50 black goby (primary hap 2023)[IGV] Gobius niger GCA_951799975.1_fGobNig1.1 SAMEA13854149 PRJEB62588 2023-05-27
51 black perch (LCO1_2020_lvr alternate hap 2022)[IGV] Embiotoca jacksoni GCA_022578405.1_fEmbJac1.0.a SAMN24959158 PRJNA796978 2022-03-15
52 black perch (LCO1_2020_lvr primary hap 2022)[IGV] Embiotoca jacksoni GCA_022577435.1_fEmbJac1.0.p SAMN24959158 PRJNA796979 2022-03-15
53 black rockcod[IGV] Notothenia coriiceps GCF_000735185.1_NC01 SAMN02206445 PRJNA66471 2014-07-29
54 black seabass (Rhode Island RG_2023a 2023)[IGV] Centropristis striata GCF_030273125.1_C.striata_1.0 SAMN31685414 PRJNA900280 2023-06-20
55 blackbelly eelpout (fLycPai1 haplotype 1 2023)[IGV] Lycodopsis pacificus GCA_028021495.1_fLycPai1.hap1 SAMN32629383 PRJNA921713 2023-01-26
56 blackbelly eelpout (fLycPai1 haplotype 2 2023)[IGV] Lycodopsis pacificus GCA_028022725.1_fLycPai1.hap2 SAMN32629383 PRJNA921714 2023-01-31
57 blackstripe livebearer (line A6 2022)[IGV] Poeciliopsis prolifica GCF_027474105.1_Auburn_PproV2 SAMN31431695 PRJNA893701 2022-12-28
58 blacktail shiner (hap1 2024)[IGV] Cyprinella venusta GCA_038021265.1_fCypVen1.hap1 SAMN40647018 PRJNA1093101 2024-04-08
59 blacktail shiner (hap2 2024)[IGV] Cyprinella venusta GCA_038024135.1_fCypVen1.hap2 SAMN40647018 PRJNA1093102 2024-04-08
60 blue catfish (D&B 2022)[IGV] Ictalurus furcatus GCF_023375685.1_Billie_1.0 SAMN28041099 PRJNA834118 2022-06-02
61 blue tilapia (BGI-SZ)[IGV] Oreochromis aureus GCF_005870065.1_ASM587006v1 SAMN11513266 PRJNA539829 2019-05-28
62 blue tilapia (Guangdong)[IGV] Oreochromis aureus GCF_013358895.1_ZZ_aureus SAMN14256941 PRJNA609616 2020-06-19
63 blue whiting (primary hap 2024)[IGV] Micromesistius poutassou GCA_964030765.1_fMicPou1.1 SAMEA111457552 PRJEB75077 2024-04-20
64 bluestreak cleaner wrasse (JK-2023 2023)[IGV] Labroides dimidiatus GCA_030710495.1_ASM3071049v1 SAMN33387180 PRJNA937036 2023-08-21
65 bluestripe pipefish (RoL2022-K1 2023)[IGV] Doryrhamphus excisus GCF_030265055.1_RoL_Dexc_1.0 SAMN31865074 PRJNA851781 2023-06-30
66 blunt-snouted clingfish (alternate hap)[IGV] Gouania willdenowi GCA_900650505.1_fGouWil2.1_alternate_haplotype SAMEA104026382 PRJEB30360 2019-02-07
67 blunt-snouted clingfish (v2 2020 genbank)[IGV] Gouania willdenowi GCA_900634775.2_fGouWil2.2 SAMEA104026382 PRJEB30359 2020-07-31
68 Boeseman's rainbowfish (fMelBoe1 alternate hap 2021)[IGV] Melanotaenia boesemani GCA_017639755.1_fMelBoe1.alt SAMN12623618 PRJNA561966 2021-03-30
69 Boeseman's rainbowfish (fMelBoe1 primary hap 2021)[IGV] Melanotaenia boesemani GCF_017639745.1_fMelBoe1.pri SAMN12623618 PRJNA561965 2021-03-30
70 Bolin's lanternfish (primary hap 2024)[IGV] Protomyctophum bolini GCA_963924005.1_fProBol1.1 SAMEA12815434 PRJEB71901 2024-01-19
71 bonti-bonti (fTelBon1 alternate hap 2022)[IGV] Telmatherina bonti GCA_933228925.1_fTelBon1.1_alternate_haplotype SAMEA8592627 PRJEB51591 2022-03-23
72 bonti-bonti (fTelBon1 primary hap 2022)[IGV] Telmatherina bonti GCA_933228915.1_fTelBon1.1 SAMEA8592627 PRJEB51590 2022-03-23
73 bony fish N.antarctica (primary hap 2024)[IGV] Nansenia antarctica GCA_963989245.1_fNanAnt1.1 SAMEA8748805 PRJEB73742 2024-03-11
74 bony fish P.dabryanus (BB 2023)[IGV] Paramisgurnus dabryanus GCF_030506205.1_PD_contigs_1.0 SAMN35654119 PRJNA980909 2023-07-19
75 bony fish P.klunzingeri (RE-2024bhap1 2024)[IGV] Pempheris klunzingeri GCA_042242105.1_fPemKlu1.hap1 SAMN40589649 PRJNA1090818 2024-09-25
76 bony fish P.klunzingeri (RE-2024bhap2 2024)[IGV] Pempheris klunzingeri GCA_042242125.1_fPemKlu1.hap2 SAMN40589649 PRJNA1090819 2024-09-25
77 bony fish R.sp. 'chilingali' (2024)[IGV] Rhamphochromis sp. 'chilingali' GCA_963969265.1_fRhaChi2.1 SAMEA112818853 PRJEB72870 2024-02-26
78 bony fish T.vachellii (PV-2020 2023)[IGV] Tachysurus vachellii GCF_030014155.1_HZAU_Pvac_v1 SAMN33769291 PRJNA819563 2023-05-16
79 bowfin (hap1 2024)[IGV] Amia calva GCA_036373705.1_fAmiCal2.hap1 SAMN39643085 PRJNA1070663 2024-02-06
80 Brauer's lanternfish (alternate hap 2023)[IGV] Gymnoscopelus braueri GCA_963281105.1_fGymBra2.1_alternate_haplotype SAMEA12815494 PRJEB65069 2023-08-20
81 Brauer's lanternfish (primary hap 2023)[IGV] Gymnoscopelus braueri GCA_963280865.1_fGymBra2.1 SAMEA12815494 PRJEB65068 2023-08-20
82 broad-nosed pipefish (Sweden RoL2023-S1 2023)[IGV] Syngnathus typhle GCF_033458585.1_RoL_Styp_1.0 SAMN36673858 PRJNA851781 2023-11-13
83 brook trout (EN_2023a 2023)[IGV] Salvelinus fontinalis GCF_029448725.1_ASM2944872v1 SAMN32676627 PRJNA922922 2023-03-28
84 brown-marbled grouper (2020)[IGV] Epinephelus fuscoguttatus GCF_011397635.1_E.fuscoguttatus.final_Chr_v1 SAMD00201013 PRJDB9224 2020-02-20
85 Burton's mouthbrooder (Broad 2011)[IGV] Haplochromis burtoni GCF_000239415.1_AstBur1.0 SAMN00139641 PRJNA60363 2011-12-22
86 Burton's mouthbrooder (NCSU 2021)[IGV] Haplochromis burtoni GCF_018398535.1_NCSU_Asbu1 SAMN17845830 PRJNA701062 2021-05-19
87 butterfish (fScaArg1 alternate hap 2021)[IGV] Scatophagus argus GCA_020382915.1_fScaArg1.alt SAMN12623616 PRJNA749580 2021-10-07
88 butterfish (fScaArg1 primary hap 2021)[IGV] Scatophagus argus GCF_020382885.2_fScaArg1.pri SAMN12623616 PRJNA749579 2021-10-13
89 butterfly blenny (primary hap 2023)[IGV] Blennius ocellaris GCA_963422515.1_fBleOce1.1 SAMEA112788961 PRJEB65837 2023-09-13
90 California sheephead (SPU_LCO1_2020_fin alternate hap 2022)[IGV] Semicossyphus pulcher GCA_022749735.1_fSemPul1.0.a SAMN25656429 PRJNA807365 2022-03-29
91 California sheephead (SPU_LCO1_2020_fin primary hap 2022)[IGV] Semicossyphus pulcher GCA_022749685.1_fSemPul1.0.p SAMN25656429 PRJNA807366 2022-03-29
92 channel bull blenny (2019 refseq)[IGV] Cottoperca gobio GCF_900634415.1_fCotGob3.1 SAMEA104242975 PRJEB30248 2019-02-06
93 channel bull blenny (alternate hap 2019)[IGV] Cottoperca gobio GCA_900634435.1_fCotGob3.1_alternate_haplotype SAMEA104242975 PRJEB30256 2019-02-07
94 channel catfish (USDA103 v2.0 2022)[IGV] Ictalurus punctatus GCF_001660625.3_Coco_2.0 SAMN03486842 PRJNA281269 2022-10-20
95 cherry salmon (Uvic2021 2024)[IGV] Oncorhynchus masou masou GCF_036934945.1_UVic_Omas_1.1 SAMN36746976 PRJNA999701 2024-03-01
96 chevron butterflyfish (hap1 2024)[IGV] Chaetodon trifascialis GCA_039877785.1_fChaTrf1.hap1 SAMN41253346 PRJNA1108764 2024-05-29
97 chevron butterflyfish (hap2 2024)[IGV] Chaetodon trifascialis GCA_039877575.1_fChaTrf1.hap2 SAMN41253346 PRJNA1108765 2024-05-29
98 chichlid (S. diagramma)[IGV] Simochromis diagramma GCF_900408965.1_fSimDia1.1 SAMEA104026415 PRJEB26682 2018-06-18
99 Chinese cavefish (2022)[IGV] Triplophysa rosa GCF_024868665.1_Trosa_1v2 SAMN16587819 PRJNA673076 2022-09-14
100 Chinese large-mouth catfish (SWU-2019-XX 2020)[IGV] Silurus meridionalis GCF_014805685.1_ASM1480568v1 SAMN14558653 PRJNA623722 2020-10-02
101 Chinese sucker (Aquarium Trade MX2 2022)[IGV] Myxocyprinus asiaticus GCF_019703515.2_UBuf_Myxa_2 SAMN19774990 PRJNA739167 2022-10-26
102 Chinook salmon (v1 2018 female)[IGV] Oncorhynchus tshawytscha GCF_002872995.1_Otsh_v1.0 SAMN07843558 PRJNA416144 2018-01-16
103 Chinook salmon (v2 Ot180627B 2021 male rfseq)[IGV] Oncorhynchus tshawytscha GCF_018296145.1_Otsh_v2.0 SAMN17219827 PRJNA416144 2021-05-07
104 chub mackerel (fScoJap1 alternate hap 2022)[IGV] Scomber japonicus GCA_027409835.1_fScoJap1.alt SAMN32224830 PRJNA912109 2022-12-27
105 chub mackerel (primary hap 2022 refseq)[IGV] Scomber japonicus GCF_027409825.1_fScoJap1.pri SAMN32224830 PRJNA912108 2022-12-28
106 chum salmon (Oke142-1_Chum_Gynogen 2020)[IGV] Oncorhynchus keta GCF_012931545.1_Oket_V1 SAMN12367893 PRJNA556729 2020-04-29
107 chum salmon (PuntledgeMale-10-30-2019 2022)[IGV] Oncorhynchus keta GCF_023373465.1_Oket_V2 SAMN16447169 PRJNA669401 2022-05-16
108 climbing perch (alternate hap 2019)[IGV] Anabas testudineus GCA_900650485.1_fAnaTes1.2_alternate_haplotype SAMEA104026376 PRJEB30391 2019-02-07
109 climbing perch (v1.3 2021)[IGV] Anabas testudineus GCA_900324465.3_fAnaTes1.3 SAMEA104026376 PRJEB25768 2021-04-24
110 clown anemonefish (DU_AmpOce 2017)[IGV] Amphiprion ocellaris GCF_002776465.1_AmpOce1.0 SAMN07982614 PRJNA407816 2017-11-16
111 clown anemonefish (Okinawa individual 3 2022)[IGV] Amphiprion ocellaris GCF_022539595.1_ASM2253959v1 SAMN23798798 PRJNA787397 2022-03-10
112 coho salmon (150728-3 2019)[IGV] Oncorhynchus kisutch GCF_002021735.2_Okis_V2 SAMN05991263 PRJNA352719 2019-11-04
113 common bream (primary hap 2024)[IGV] Abramis brama GCA_963993115.1_fAbrBra2.1 SAMEA11296536 PRJEB73975 2024-03-16
114 common carp (R8XR3 2021)[IGV] Cyprinus carpio carpio GCA_905221575.1_Cypcar_WagV4.0 SAMEA7997750 PRJEB42985 2021-06-27
115 common carp (SPL01 2021)[IGV] Cyprinus carpio GCF_018340385.1_ASM1834038v1 SAMN17005855 PRJNA682709 2021-05-12
116 common dab (primary hap 2023)[IGV] Limanda limanda GCF_963576545.1_fLimLim1.1 SAMEA112765706 PRJEB68099 2023-11-03
117 common seadragon (TA_2022b 2022)[IGV] Phyllopteryx taeniolatus GCF_024500385.1_UOR_Ptae_1.2 SAMN28950364 PRJNA765702 2022-08-03
118 common sole (alternate hap 2023)[IGV] Solea solea GCA_958295035.1_fSolSol10.1_alternate_haplotype SAMEA10984647 PRJEB63670 2023-07-06
119 common sole (primary hap 2023 refseq)[IGV] Solea solea GCF_958295425.1_fSolSol10.1 SAMEA10984647 PRJEB63669 2023-07-06
120 common whitefish (fCorLav1.hap1.1 2024)[IGV] Coregonus lavaretus GCA_964263955.1_fCorLav1.hap1.1 SAMEA111528661 PRJEB80005 2024-09-15
121 common whitefish (fCorLav1.hap2.1 2024)[IGV] Coregonus lavaretus GCA_964263835.1_fCorLav1.hap2.1 SAMEA111528661 PRJEB80006 2024-09-15
122 convict blenny (fPhoLeu1 alternate hap 2021)[IGV] Pholidichthys leucotaenia GCA_020510965.1_fPhoLeu1.alt SAMN12623617 PRJNA749576 2021-10-15
123 convict blenny (fPhoLeu1 primary hap 2021)[IGV] Pholidichthys leucotaenia GCA_020510985.1_fPhoLeu1.pri SAMN12623617 PRJNA749575 2021-10-15
124 copperband butterflyfish (fCheRos1 alternate hap 2021)[IGV] Chelmon rostratus GCA_017976315.1_fCheRos1.alt SAMN12623620 PRJNA561970 2021-04-15
125 copperband butterflyfish (fCheRos1 primary hap 2021)[IGV] Chelmon rostratus GCF_017976325.1_fCheRos1.pri SAMN12623620 PRJNA561969 2021-04-15
126 corkwing wrasse (primary hap 2022)[IGV] Symphodus melops GCA_947650265.1_fSymMel2.1 SAMEA12219485 PRJEB58352 2022-12-21
127 Corydoras catfish unclassified (C115 2021)[IGV] Corydoras sp. C115 GCA_019802505.1_Lin1PacBio.ctg.fa.r3p3_pilon_3_oneline.fasta SAMN18128058 PRJNA706371 2021-08-30
128 crucian carp (alternate hap 2023)[IGV] Carassius carassius GCA_963082795.1_fCarCar2.1_alternate_haplotype SAMEA11296534 PRJEB64836 2023-08-08
129 crucian carp (primary hap 2023 refseq)[IGV] Carassius carassius GCF_963082965.1_fCarCar2.1 SAMEA11296534 PRJEB64837 2023-08-09
130 cuckoo wrasse (primary hap 2023)[IGV] Labrus mixtus GCF_963584025.1_fLabMix1.1 SAMEA111562155 PRJEB68165 2023-11-05
131 cunner (fRauAds1 primary hap 2021)[IGV] Tautogolabrus adspersus GCA_020745685.1_fTauAds1.pri.cur SAMN22589422 PRJNA774878 2021-11-05
132 cunner (fTauAds1 alternate hap 2021)[IGV] Tautogolabrus adspersus GCA_020745675.1_fTauAds1.alt.cur SAMN22589422 PRJNA774879 2021-11-05
133 Dalai köbertrulling (WHDGS20190420 2020)[IGV] Triplophysa dalaica GCF_015846415.1_ASM1584641v1 SAMN14582390 PRJNA624716 2020-12-11
134 Danionella translucida (Bolton 2019)[IGV] Danionella cerebrum GCA_007224835.1_ASM722483v1 SAMN11288624 PRJNA445947 2019-07-22
135 Danionella translucida (fDanTra1 2020)[IGV] Danionella cerebrum GCA_903798025.1_fDanTra1.1 SAMEA104129915 PRJEB38563 2020-06-16
136 dark-edged splitfin (DD_20200921_A 2022 refseq)[IGV] Girardinichthys multiradiatus GCF_021462225.1_DD_fGirMul_XY1 SAMN22242658 PRJNA768329 2022-02-24
137 delta smelt[IGV] Hypomesus transpacificus GCF_021917145.1_fHypTra1 SAMN24964577 PRJNA762373 2022-02-04
138 denticle herring (alternate hap 2019)[IGV] Denticeps clupeoides GCA_900700345.2_fDenClu1.1_alternate_haplotype SAMEA104129917 PRJEB31546 2019-03-27
139 denticle herring (v2 2020)[IGV] Denticeps clupeoides GCA_900700375.2_fDenClu1.2 SAMEA104129917 PRJEB31545 2020-07-31
140 dorado (hap1 2023)[IGV] Salminus brasiliensis GCA_030448965.1_fSalBra1.hap1 SAMN35075251 PRJNA972454 2023-07-13
141 dorado (hap2 2023)[IGV] Salminus brasiliensis GCA_030463535.1_fSalBra1.hap2 SAMN35075251 PRJNA972453 2023-07-14
142 double-spotted pufferfish T.bimaculatus (TB-2018 2019)[IGV] Takifugu bimaculatus GCA_004026145.2_XU_Tbim_1.0 SAMN10524747 PRJNA508537 2019-06-21
143 dwarf seahorse (Florida 2022)[IGV] Hippocampus zosterae GCF_025434085.1_ASM2543408v3 SAMN30156018 PRJNA851781 2022-09-29
144 eastern happy (v3 2021)[IGV] Astatotilapia calliptera GCA_900246225.5_fAstCal1.3 SAMEA104026430 PRJEB24325 2021-04-24
145 electric eel (fEleEle1 alternate hap 2020)[IGV] Electrophorus electricus GCA_013347915.1_fEleEle1.alt SAMN12623625 PRJNA561982 2020-06-12
146 electric eel (fEleEle1 primary hap 2020)[IGV] Electrophorus electricus GCF_013358815.1_fEleEle1.pri SAMN12623625 PRJNA561981 2020-06-23
147 electric eel (MRS-EE1 2018 U Wisconsin)[IGV] Electrophorus electricus GCF_003665695.1_Ee_SOAP_WITH_SSPACE SAMN02802636 PRJNA249073 2018-10-30
148 elephant fish B.brachyistius (T26 2022)[IGV] Brienomyrus brachyistius GCF_023856365.1_BBRACH_0.4 SAMN28860763 PRJNA845764 2022-06-28
149 emerald rockcod[IGV] Trematomus bernacchii GCF_902827165.1_fTreBer1.1 SAMEA104132834 PRJEB37642 2020-04-15
150 Eurasian minnow (alternate hap 2023)[IGV] Phoxinus phoxinus GCA_949152275.1_fPhoPho1.1_alternate_haplotype SAMEA11296539 PRJEB59821 2023-04-09
151 Eurasian minnow (primary hap 2023)[IGV] Phoxinus phoxinus GCA_949152265.1_fPhoPho1.1 SAMEA11296539 PRJEB59820 2023-04-08
152 European anchovy (BLACKSEA-1 2023)[IGV] Engraulis encrasicolus GCF_034702125.1_IST_EnEncr_1.0 SAMN37732789 PRJNA1026044 2023-12-28
153 European chub (alternate hap 2023)[IGV] Squalius cephalus GCA_949319155.1_fSquCep2.1_alternate_haplotype SAMEA11296547 PRJEB60238 2023-04-09
154 European chub (primary hap 2023)[IGV] Squalius cephalus GCA_949319135.1_fSquCep2.1 SAMEA11296547 PRJEB60239 2023-04-08
155 European flounder (alternate hap 2023)[IGV] Platichthys flesus GCA_949316195.1_fPlaFle2.1_alternate_haplotype SAMEA110026475 PRJEB60140 2023-04-08
156 European flounder (primary hap 2023)[IGV] Platichthys flesus GCA_949316205.1_fPlaFle2.1 SAMEA110026475 PRJEB60141 2023-04-05
157 European flounder (primary hap 2023)[IGV] Platichthys flesus GCF_949316205.1_fPlaFle2.1 SAMEA110026475 PRJEB60141 2023-04-05
158 European perch[IGV] Perca fluviatilis GCF_010015445.1_GENO_Pfluv_1.0 SAMN12071746 PRJNA549142 2020-01-30
159 European plaice (alternate hap 2022)[IGV] Pleuronectes platessa GCA_947347695.1_fPlePla1.1_alternate_haplotype SAMEA13853390 PRJEB57576 2022-11-27
160 European plaice (primary hap 2022 refseq)[IGV] Pleuronectes platessa GCF_947347685.1_fPlePla1.1 SAMEA13853390 PRJEB57577 2022-11-29
161 European seabass (2021)[IGV] Dicentrarchus labrax GCF_905237075.1_dlabrax2021 SAMEA8063812 PRJEB43042 2021-04-24
162 European smelt (primary hap 2023)[IGV] Osmerus eperlanus GCA_963692335.1_fOsmEpe2.1 SAMEA14448128 PRJEB70540 2023-12-11
163 European smelt (primary hap 2023)[IGV] Osmerus eperlanus GCF_963692335.1_fOsmEpe2.1 SAMEA14448128 PRJEB70540 2023-12-11
164 European sprat (primary hap 2023)[IGV] Sprattus sprattus GCA_963457725.1_fSprSpr1.1 SAMEA111562173 PRJEB66150 2023-09-20
165 fathead minnow[IGV] Pimephales promelas GCF_016745375.1_EPA_FHM_2.0 SAMN12875914 PRJNA565199 2021-01-24
166 flathead mullet[IGV] Mugil cephalus GCF_022458985.1_CIBA_Mcephalus_1.1 SAMN16703275 PRJNA675305 2022-03-04
167 flier cichlid (alternate hap MPI-CPG 2019)[IGV] Archocentrus centrarchus GCA_007364235.1_fArcCen1_v1.h SAMN09948522 PRJNA489130 2019-07-24
168 flier cichlid (MPI-CPG 2019 refseq)[IGV] Archocentrus centrarchus GCF_007364275.1_fArcCen1 SAMN09948522 PRJNA489129 2019-08-01
169 freshwater garfish (fXenCan1 alternate hap 2020)[IGV] Xenentodon cancila GCA_014839645.1_fXenCan1.alt SAMN12623622 PRJNA561974 2020-09-30
170 freshwater garfish (fXenCan1 primary hap 2020)[IGV] Xenentodon cancila GCA_014839995.1_fXenCan1.pri SAMN12623622 PRJNA561973 2020-10-02
171 giant grouper[IGV] Epinephelus lanceolatus GCF_005281545.1_ASM528154v1 SAMN10786578 PRJNA516312 2019-05-13
172 gilthead seabream (alternate hap 2019)[IGV] Sparus aurata GCA_900880695.1_fSpaAur1.1_alternate_haplotype SAMEA104384835 PRJEB31902 2019-07-11
173 gilthead seabream (v2 2021)[IGV] Sparus aurata GCA_900880675.2_fSpaAur1.2 SAMEA104384835 PRJEB31901 2021-04-24
174 golden-line barbel[IGV] Sinocyclocheilus grahami GCF_001515645.1_SAMN03320097.WGS_v1.1 SAMN03320097 PRJNA274017 2015-12-16
175 goldfish[IGV] Carassius auratus GCF_003368295.1_ASM336829v1 SAMN09670328 PRJNA481500 2018-08-09
176 grass carp (HZGC_01 2021)[IGV] Ctenopharyngodon idella GCF_019924925.1_HZGC01 SAMN20170273 PRJNA745929 2021-09-14
177 great blue-spotted mudskipper (Guang Dong 2022)[IGV] Boleophthalmus pectinirostris GCF_026225935.1_ASM2622593v1 SAMN29548397 PRJNA856391 2022-11-17
178 great blue-spotted mudskipper (pooled male+femail 2014 BGI)[IGV] Boleophthalmus pectinirostris GCF_000788275.1_BP.fa SAMN03201692 PRJNA232434 2014-12-02
179 greater amberjack[IGV] Seriola dumerili GCF_002260705.1_Sdu_1.0 SAMD00083043 PRJDB5856 2017-08-03
180 greater argentine (alternate hap 2023)[IGV] Argentina silus GCA_951799415.1_fArgSil1.1_alternate_haplotype SAMEA110137623 PRJEB62528 2023-05-27
181 greater argentine (primary hap 2023)[IGV] Argentina silus GCA_951799395.1_fArgSil1.1 SAMEA110137623 PRJEB62529 2023-05-27
182 greater pipefish (v1 alternate hap 2019)[IGV] Syngnathus acus GCA_901709685.1_fSynAcu1.1_alternate_haplotype SAMEA104381750 PRJEB32742 2019-06-02
183 greater pipefish (v1.2 2020 refseq)[IGV] Syngnathus acus GCF_901709675.1_fSynAcu1.2 SAMEA104381750 PRJEB32741 2020-07-31
184 greater pipefish (v2 2023 genbank)[IGV] Syngnathus acus GCA_948146105.1_fSynAcu2.1 SAMEA13854528 PRJEB58844 2023-01-18
185 greater pipefish (v2 alternate haplotype 2023)[IGV] Syngnathus acus GCA_948146095.1_fSynAcu2.1_alternate_haplotype SAMEA13854528 PRJEB58843 2023-01-18
186 greater sand-eel (alternate hap 2023)[IGV] Hyperoplus immaculatus GCA_949358355.1_fHypImm3.1_alternate_haplotype SAMEA13854416 PRJEB60327 2023-04-09
187 greater sand-eel (primary hap 2023)[IGV] Hyperoplus immaculatus GCA_949357725.1_fHypImm3.1 SAMEA13854416 PRJEB60328 2023-04-08
188 green swordtail[IGV] Xiphophorus hellerii GCF_003331165.1_Xiphophorus_hellerii-4.1 SAMN09545741 PRJNA290782 2019-12-05
189 grey gurnard (primary hap 2023)[IGV] Eutrigla gurnardus GCA_963514095.1_fEutGur1.1 SAMEA111562159 PRJEB66429 2023-09-29
190 gudgeon (alternate hap 2023)[IGV] Gobio gobio GCA_949357705.1_fGobGob1.1_alternate_haplotype SAMEA11296538 PRJEB60323 2023-04-09
191 gudgeon (primary hap 2023)[IGV] Gobio gobio GCA_949357685.1_fGobGob1.1 SAMEA11296538 PRJEB60324 2023-04-08
192 Gulf pipefish (Florida 2022)[IGV] Syngnathus scovelli GCF_024217435.2_RoL_Ssco_1.2 SAMN29251497 PRJNA851781 2022-10-17
193 Gulf pipefish (RoL_Ssco_1.1 Florida 2022 refseq)[IGV] Syngnathus scovelli GCF_024217435.1_RoL_Ssco_1.1 SAMN29251497 PRJNA851781 2022-07-12
194 Gulf pipefish (RoL_Ssco_1.2 Florida 2022 genbank)[IGV] Syngnathus scovelli GCA_024217435.4_RoL_Ssco_1.2 SAMN29251497 PRJNA851781 2022-10-17
195 guppy[IGV] Poecilia reticulata GCF_000633615.1_Guppy_female_1.0_MT SAMN02404645 PRJNA238429 2014-04-28
196 honeycomb rockfish (fSebUmb1 alternate hap 2020)[IGV] Sebastes umbrosus GCA_015220095.1_fSebUmb1.alt SAMN12629503 PRJNA562006 2020-11-02
197 honeycomb rockfish (fSebUmb1 primary hap 2020)[IGV] Sebastes umbrosus GCF_015220745.1_fSebUmb1.pri SAMN12629503 PRJNA562005 2020-11-03
198 horned golden-line barbel[IGV] Sinocyclocheilus rhinocerous GCF_001515625.1_SAMN03320098_v1.1 SAMN03320098 PRJNA274017 2015-12-14
199 humphead wrasse[IGV] Cheilinus undulatus GCF_018320785.1_ASM1832078v1 SAMN14532944 PRJNA622923 2021-05-12
200 Indian glassy fish (alternate hap 2019)[IGV] Parambassis ranga GCA_900651595.1_fParRan2.1_alternate_haplotype SAMEA4675621 PRJEB30258 2019-02-12
201 Indian glassy fish (v2 2020)[IGV] Parambassis ranga GCA_900634625.2_fParRan2.2 SAMEA4675621 PRJEB30257 2020-07-31
202 Indian medaka[IGV] Oryzias melastigma GCF_002922805.2_ASM292280v2 SAMN07596545 PRJNA401159 2020-04-13
203 Indo-Pacific tarpon (2020)[IGV] Megalops cyprinoides GCF_013368585.1_fMegCyp1.pri SAMN12623619 PRJNA561967 2020-06-23
204 Japanese flounder[IGV] Paralichthys olivaceus GCF_001970005.1_Flounder_ref_guided_V1.0 SAMN05817825 PRJNA344006 2017-01-24
205 Japanese medaka[IGV] Oryzias latipes GCF_002234675.1_ASM223467v1 SAMN06689957 PRJNA325079 2017-07-27
206 jewelled blenny (2019)[IGV] Salarias fasciatus GCF_902148845.1_fSalaFa1.1 SAMEA4966329 PRJEB33184 2019-07-03
207 jewelled blenny (alternate hap 2019)[IGV] Salarias fasciatus GCA_902148835.1_fSalaFa1.1_alternate_haplotype SAMEA4966329 PRJEB33183 2019-07-03
208 John dory (alternate hap 2023)[IGV] Zeus faber GCA_960530785.1_fZeuFab8.1_alternate_haplotype SAMEA111562156 PRJEB64532 2023-07-26
209 John dory (primary hap 2023)[IGV] Zeus faber GCA_960531495.1_fZeuFab8.1 SAMEA111562156 PRJEB64533 2023-07-26
210 kelp grouper (mb 2019)[IGV] Epinephelus moara GCF_006386435.1_YSFRI_EMoa_1.0 SAMN11657372 PRJNA543191 2019-06-26
211 lake trout[IGV] Salvelinus namaycush GCF_016432855.1_SaNama_1.0 SAMN16985724 PRJNA682269 2021-01-06
212 lake whitefish (EN20210322 male 2021 Laval U)[IGV] Coregonus clupeaformis GCF_018398675.1_ASM1839867v1 SAMN18351024 PRJNA715481 2021-05-25
213 lake whitefish (EN_2021a female 2021 Laval U)[IGV] Coregonus clupeaformis GCF_020615455.1_ASM2061545v1 SAMN21920801 PRJNA767633 2021-11-04
214 lantern fish (primary hap 2024)[IGV] Nannobrachium achirus GCA_963921795.1_fNanAch1.1 SAMEA12815432 PRJEB71797 2024-02-09
215 large yellow croaker[IGV] Larimichthys crocea GCF_000972845.2_L_crocea_2.0 SAMN03092871 PRJNA245366 2018-11-27
216 large-eye snaggletooth (alternate hap 2023)[IGV] Borostomias antarcticus GCA_949987545.1_fBorAnt1.1_alternate_haplotype SAMEA8748812 PRJEB61590 2023-04-29
217 large-eye snaggletooth (primary hap 2023)[IGV] Borostomias antarcticus GCA_949987555.1_fBorAnt1.1 SAMEA8748812 PRJEB61589 2023-05-03
218 largemouth bass (2-A1 2021)[IGV] Micropterus salmoides GCA_019677235.1_HNU_Msal_1.0 SAMN15783178 PRJNA656383 2021-08-19
219 largemouth bass (LMB-PRFRI aquatic 2020)[IGV] Micropterus salmoides GCF_014851395.1_ASM1485139v1 SAMN15299117 PRJNA640112 2020-10-05
220 largescale foureyes (fAnaAna1 alternate hap 2020)[IGV] Anableps anableps GCA_014839705.1_fAnaAna1.alt SAMN12623628 PRJNA561986 2020-09-30
221 largescale foureyes (fAnaAna1 primary hap 2020)[IGV] Anableps anableps GCA_014839685.1_fAnaAna1.pri SAMN12623628 PRJNA561985 2020-10-02
222 leafy seadragon (BA_2022a 2022)[IGV] Phycodurus eques GCF_024500275.1_UOR_Pequ_1.1 SAMN28947883 PRJNA765699 2022-08-03
223 lemon sole (primary hap 2024)[IGV] Microstomus kitt GCA_964266715.1_fMicKit1.1 SAMEA114298639 PRJEB80479 2024-09-26
224 leopard coralgrouper[IGV] Plectropomus leopardus GCF_008729295.1_YSFRI_Pleo_2.0 SAMN11897347 PRJNA545594 2020-05-27
225 lesser salmon catfish (fNeoGra1 alternate hap 2023)[IGV] Neoarius graeffei GCA_027579805.1_fNeoGra1.alt SAMN28453209 PRJNA839495 2023-01-06
226 lesser salmon catfish (fNeoGra1 primary hap 2023 refseq)[IGV] Neoarius graeffei GCF_027579695.1_fNeoGra1.pri SAMN28453209 PRJNA839496 2023-01-09
227 lesser sand-eel (alternate hap 2023)[IGV] Ammodytes marinus GCA_950004245.1_fAmmMar1.1_alternate_haplotype SAMEA110137622 PRJEB61583 2023-04-29
228 lesser sand-eel (primary hap 2023)[IGV] Ammodytes marinus GCA_949987685.1_fAmmMar1.1 SAMEA110137622 PRJEB61584 2023-05-03
229 lesser weever (primary hap 2023)[IGV] Echiichthys vipera GCA_963691815.1_fEchVip8.1 SAMEA112765695 PRJEB70560 2023-12-07
230 limp eelpout (alternate hap 2023)[IGV] Melanostigma gelatinosum GCA_949748265.1_fMelGel1.1_alternate_haplotype SAMEA12815492 PRJEB60806 2023-04-08
231 limp eelpout (primary hap 2023)[IGV] Melanostigma gelatinosum GCA_949748355.1_fMelGel1.1 SAMEA12815492 PRJEB60807 2023-04-08
232 live sharksucker (alternate hap 2019)[IGV] Echeneis naucrates GCA_900963505.1_fEcheNa1.1_alternate_haplotype SAMEA4966390 PRJEB31993 2019-04-11
233 live sharksucker (v2 2021)[IGV] Echeneis naucrates GCA_900963305.2_fEcheNa1.2 SAMEA4966390 PRJEB31992 2021-04-24
234 longspined bullhead (fTauBub2.1 alternate hap 2021)[IGV] Taurulus bubalis GCA_910589325.1_fTauBub2.1_alternate_haplotype SAMEA7522994 PRJEB45316 2021-07-07
235 longspined bullhead (fTauBub2.1 primary hap 2021)[IGV] Taurulus bubalis GCA_910589615.1_fTauBub2.1 SAMEA7522994 PRJEB45317 2021-07-07
236 lumpfish (alternate hap 2019)[IGV] Cyclopterus lumpus GCA_009769515.1_fCycLum1.alt SAMN12629502 PRJNA562004 2019-12-19
237 lumpfish (primary hap v1 2019 refseq)[IGV] Cyclopterus lumpus GCF_009769545.1_fCycLum1.pri SAMN12629502 PRJNA562003 2019-12-23
238 lumpfish (primary hap v2.1 2023 genbank)[IGV] Cyclopterus lumpus GCA_963457625.1_fCycLum2.1 SAMEA112789128 PRJEB66140 2023-09-20
239 lyretail cichlid[IGV] Neolamprologus brichardi GCF_000239395.1_NeoBri1.0 SAMN00139653 PRJNA60365 2011-12-22
240 mandarin fish (FFG_IHB_CAS 2021)[IGV] Siniperca chuatsi GCF_020085105.1_ASM2008510v1 SAMN19768590 PRJNA738969 2021-09-24
241 mandarin fish (RoL2022-P1 2023)[IGV] Synchiropus splendidus GCF_027744825.2_RoL_Sspl_1.0 SAMN31865018 PRJNA851781 2023-01-13
242 mangrove rivulus[IGV] Kryptolebias marmoratus GCF_001649575.2_ASM164957v2 SAMN04622665 PRJNA626665 2020-11-16
243 marbled rockcod (alternate hap 2023)[IGV] Notothenia rossii GCA_949606865.1_fNotRos5.1_alternate_haplotype SAMEA12815441 PRJEB60488 2023-04-09
244 marbled rockcod (primary hap 2023)[IGV] Notothenia rossii GCA_949606895.1_fNotRos5.1 SAMEA12815441 PRJEB60487 2023-04-08
245 Mariana snailfish (Mariana Trench HS2019 2023)[IGV] Pseudoliparis swirei GCF_029220125.1_NWPU_hadal_v1 SAMN29358067 PRJNA852951 2023-03-16
246 Mexican tetra (2017 WashU)[IGV] Astyanax mexicanus GCF_000372685.2_Astyanax_mexicanus-2.0 SAMN02981523 PRJNA89115 2017-09-25
247 Mexican tetra (ESR-SI-001 2022)[IGV] Astyanax mexicanus GCF_023375975.1_AstMex3_surface SAMN25965548 PRJNA807270 2022-05-19
248 Mexican tetra (Pach_M1 Pachon cave 2021)[IGV] Astyanax mexicanus GCA_019721115.1_AMEX_1.1 SAMN18310656 PRJNA734455 2021-08-25
249 milkfish (2019)[IGV] Chanos chanos GCF_902362185.1_fChaCha1.1 SAMEA5159473 PRJEB33882 2019-08-14
250 milkfish (alternate hap 2019)[IGV] Chanos chanos GCA_902362175.1_fChaCha1.1_alternate_haplotype SAMEA5159473 PRJEB33881 2019-08-16
251 minispotted lanternfish (primary hap 2023)[IGV] Gymnoscopelus microlampas GCA_963454915.1_fGymMic1.1 SAMEA12815435 PRJEB65926 2023-09-13
252 monkeyface prickleback (CVI_PGR_0920_01 alternate hap 2022)[IGV] Cebidichthys violaceus GCA_023349535.1_fCebVio1.0.a SAMN25872352 PRJNA807353 2022-05-12
253 monkeyface prickleback (CVI_PGR_0920_01 primary hap 2022)[IGV] Cebidichthys violaceus GCA_023349555.1_fCebVio1.0.p SAMN25872352 PRJNA807354 2022-05-12
254 monkeyface prickleback (CVI_PGR_0920_01 primary hap 2022)[IGV] Cebidichthys violaceus GCF_023349555.1_fCebVio1.0.p SAMN25872352 PRJNA807354 2022-05-12
255 Monterrey platyfish[IGV] Xiphophorus couchianus GCF_001444195.1_X_couchianus-1.0 SAMN03922721 PRJNA290781 2018-09-19
256 mudskipper P.magnuspinnatus (v1 alternate hap 2020 genbank)[IGV] Periophthalmus magnuspinnatus GCA_009829135.1_fPerMag1.alt SAMN12629500 PRJNA561999 2020-01-03
257 mudskipper P.magnuspinnatus (v1.2 primary hap 2023)[IGV] Periophthalmus magnuspinnatus GCF_009829125.3_fPerMag1.2.pri SAMN12629500 PRJNA561998 2023-03-21
258 mummichog (Maine)[IGV] Fundulus heteroclitus GCF_000826765.1_Fundulus_heteroclitus-3.0.2 SAMN03277211 PRJNA177717 2015-01-21
259 mummichog (U. Missouri)[IGV] Fundulus heteroclitus GCF_011125445.2_MU-UCD_Fhet_4.1 SAMN13668183 PRJNA597160 2020-08-13
260 New Zealand spotty (2019)[IGV] Notolabrus celidotus GCA_009762535.1_fNotCel1.pri SAMN12623201 PRJNA561956 2019-12-18
261 New Zealand spotty (alternate hap 2019)[IGV] Notolabrus celidotus GCA_009762545.1_fNotCel1.alt SAMN12623201 PRJNA561957 2019-12-17
262 Nile tilapia[IGV] Oreochromis niloticus GCF_001858045.2_O_niloticus_UMD_NMBU SAMN05859795 PRJNA344471 2018-06-29
263 ninespine stickleback (alternate hap 2023)[IGV] Pungitius pungitius GCA_949316245.1_fPunPun2.1_alternate_haplotype SAMEA11296545 PRJEB60135 2023-04-08
264 ninespine stickleback (NSP_V7 2020)[IGV] Pungitius pungitius GCF_902500615.1_NSP_V7 SAMEA5986199 PRJEB33823 2020-10-12
265 ninespine stickleback (primary hap 2023)[IGV] Pungitius pungitius GCA_949316345.1_fPunPun2.1 SAMEA11296545 PRJEB60134 2023-04-08
266 ninespine stickleback (primary hap 2023)[IGV] Pungitius pungitius GCF_949316345.1_fPunPun2.1 SAMEA11296545 PRJEB60134 2023-04-08
267 North African catfish (Netherlands MV-2021 2022)[IGV] Clarias gariepinus GCF_024256425.1_CGAR_prim_01v2 SAMN27021044 PRJNA818990 2022-07-13
268 northern pike[IGV] Esox lucius GCF_004634155.1_Eluc_v4 SAMN09690694 PRJNA221548 2019-04-17
269 northern pike (2020 refseq)[IGV] Esox lucius GCF_011004845.1_fEsoLuc1.pri SAMN12623624 PRJNA561977 2020-03-05
270 northern pike (alternate hap 2020)[IGV] Esox lucius GCA_011004835.1_fEsoLuc1.alt SAMN12623624 PRJNA561978 2020-02-24
271 northern snakehead (prfri 2023)[IGV] Channa argus GCF_033026475.1_Channa_argus_male_v1.0 SAMN36797326 PRJNA1001177 2023-10-25
272 Old Calabar mormyrid[IGV] Paramormyrops kingsleyae GCF_002872115.1_PKINGS_0.1 SAMN08000665 PRJNA417677 2018-01-10
273 orangethroat darter[IGV] Etheostoma spectabile GCF_008692095.1_UIUC_Espe_1.0 SAMN12373147 PRJNA556880 2019-10-07
274 orbiculate cardinalfish (2019)[IGV] Sphaeramia orbicularis GCF_902148855.1_fSphaOr1.1 SAMEA4966328 PRJEB33177 2019-07-03
275 orbiculate cardinalfish (alternate hap 2019)[IGV] Sphaeramia orbicularis GCA_902148825.1_fSphaOr1.1_alternate_haplotype SAMEA4966328 PRJEB33176 2019-07-03
276 oriental weatherfish (BS_2022a 2023)[IGV] Misgurnus anguillicaudatus GCF_027580225.1_HAU_Mang_1.0 SAMN26377316 PRJNA812369 2023-01-09
277 P.nyererei 1_Seehausen[IGV] Pundamilia nyererei GCF_000239375.1_PunNye1.0 SAMN00149614 PRJNA60367 2011-12-22
278 Pacific cod (2023)[IGV] Gadus macrocephalus GCF_031168955.1_ASM3116895v1 SAMN33716189 PRJNA943286 2023-09-05
279 Pacific halibut (PH-IPHC-18 2020)[IGV] Hippoglossus stenolepis GCF_013339905.1_IPHC_HiSten_1.0 SAMN14503176 PRJNA622249 2020-06-16
280 Pacific halibut (QCI-W04-F060 2022)[IGV] Hippoglossus stenolepis GCF_022539355.2_HSTE1.2 SAMN29538134 PRJNA622249 2022-03-10
281 Pacific saury (AMF1-May2022 2023)[IGV] Cololabis saira GCF_033807715.1_fColSai1.1 SAMN37790936 PRJNA1027303 2023-11-22
282 panther danio (primary hap 2020)[IGV] Danio aesculapii GCF_903798145.1_fDanAes4.1 SAMEA104240212 PRJEB38583 2020-06-27
283 parallel lanternfish (alternate hap 2024)[IGV] Protomyctophum parallelum GCA_964188415.1_fProPar1.1_alternate_haplotype SAMEA12815440 PRJEB76808 2024-06-21
284 parallel lanternfish (primary hap 2024)[IGV] Protomyctophum parallelum GCA_964188405.1_fProPar1.1 SAMEA12815440 PRJEB76807 2024-06-21
285 Patagonian blennie (Puerto Natales JMC-PN-2008 2024)[IGV] Eleginops maclovinus GCF_036324505.1_JC_Emac_rtc_rv5 SAMN34355790 PRJNA917608 2024-02-01
286 pejerrey (fOdoBon6 haplotype 1 2023)[IGV] Odontesthes bonariensis GCA_027942865.1_fOdoBon6.hap1 SAMN31802211 PRJNA916695 2023-01-24
287 pejerrey (fOdoBon6 haplotype 2 2023)[IGV] Odontesthes bonariensis GCA_027942885.1_fOdoBon6.hap2 SAMN31802211 PRJNA916696 2023-01-20
288 peladilla (fAplTae1 alternate hap 2021)[IGV] Aplochiton taeniatus GCA_017639685.1_fAplTae1.alt SAMN12623621 PRJNA561972 2021-03-30
289 peladilla (fAplTae1 primary hap 2021)[IGV] Aplochiton taeniatus GCA_017639675.1_fAplTae1.pri SAMN12623621 PRJNA561971 2021-03-30
290 pike-perch[IGV] Sander lucioperca GCF_008315115.2_SLUC_FBN_1.2 SAMN12618724 PRJNA561467 2020-08-14
291 pinecone soldierfish (2019)[IGV] Myripristis murdjan GCF_902150065.1_fMyrMur1.1 SAMEA4872133 PRJEB33188 2019-07-03
292 pinecone soldierfish (alternate hap 2019)[IGV] Myripristis murdjan GCA_902148815.1_fMyrMur1.1_alternate_haplotype SAMEA4872133 PRJEB33187 2019-07-03
293 pink salmon[IGV] Oncorhynchus gorbuscha GCF_021184085.1_OgorEven_v1.0 SAMN18987060 PRJNA556728 2021-12-15
294 ploughfish[IGV] Gymnodraco acuticeps GCF_902827175.1_fGymAcu1.1 SAMEA104242997 PRJEB37639 2020-04-15
295 pollack (alternate hap 2023)[IGV] Pollachius pollachius GCA_949987605.1_fPolPol2.1_alternate_haplotype SAMEA111562038 PRJEB61574 2023-04-29
296 pollack (primary hap 2023)[IGV] Pollachius pollachius GCA_949987615.1_fPolPol2.1 SAMEA111562038 PRJEB61573 2023-05-03
297 predatory carp (Z2021 2022)[IGV] Chanodichthys erythropterus GCF_024489055.1_ASM2448905v1 SAMN27624467 PRJNA827856 2022-07-29
298 prehistoric monster fish (2019 refseq)[IGV] Thalassophryne amazonica GCF_902500255.1_fThaAma1.1 SAMEA104129913 PRJEB34606 2019-09-30
299 prehistoric monster fish (alternate hap 2019)[IGV] Thalassophryne amazonica GCA_902500245.1_fThaAma1.1_alternate_haplotype SAMEA104129913 PRJEB34605 2019-09-30
300 rainbow smelt (fOsmMor3 primary hap 2024)[IGV] Osmerus mordax GCA_038355195.1_fOsmMor3.pri SAMN40867348 PRJNA1098708 2024-04-17
301 rainbow smelt (fOsmMor3 primary hap 2024)[IGV] Osmerus mordax GCF_038355195.1_fOsmMor3.pri SAMN40867348 PRJNA1098708 2024-04-17
302 rainbow trout (Arlee)[IGV] Oncorhynchus mykiss GCF_013265735.2_USDA_OmykA_1.1 SAMN14537335 PRJNA623027 2020-09-23
303 rainbow trout (Swanson)[IGV] Oncorhynchus mykiss GCF_002163495.1_Omyk_1.0 SAMN05449231 PRJNA335610 2017-06-02
304 razorback sucker (HMW12.3.18 2022)[IGV] Xyrauchen texanus GCF_025860055.1_RBS_HiC_50CHRs SAMN31066171 PRJNA885108 2022-10-26
305 red drum (XU1910 2020)[IGV] Sciaenops ocellatus GCA_014183145.1_ASM1418314v1 SAMN13064845 PRJNA578506 2020-08-14
306 red-bellied piranha (fPygNat1 alternate hap 2020)[IGV] Pygocentrus nattereri GCA_015220065.1_fPygNat1.alt SAMN12623623 PRJNA561976 2020-11-02
307 red-bellied piranha (fPygNat1 primary hap 2020)[IGV] Pygocentrus nattereri GCF_015220715.1_fPygNat1.pri SAMN12623623 PRJNA561975 2020-11-03
308 red-bellied piranha (Pna-1 2016)[IGV] Pygocentrus nattereri GCF_001682695.1_Pygocentrus_nattereri-1.0.2 SAMN04522165 PRJNA301891 2016-07-12
309 reedfish (2021)[IGV] Erpetoichthys calabaricus GCF_900747795.2_fErpCal1.3 SAMEA104026374 PRJEB31579 2021-07-07
310 reedfish (alternate hap)[IGV] Erpetoichthys calabaricus GCA_900700845.2_fErpCal1.1_alternate_haplotype SAMEA104026374 PRJEB31582 2019-03-27
311 ringed pipefish (RoL2022-P2 2023)[IGV] Dunckerocampus dactyliophorus GCF_027744805.1_RoL_Ddac_1.1 SAMN31865020 PRJNA851781 2023-01-13
312 Rio pearlfish (Nwh7 v2 2021)[IGV] Nematolebias whitei GCF_014905685.2_NemWhi1 SAMN12588121 PRJNA560526 2021-03-24
313 river trout (v2 2021)[IGV] Salmo trutta GCA_901001165.2_fSalTru1.2 SAMEA994732 PRJEB32115 2021-04-24
314 roach minnow (alternate hap 2023)[IGV] Rutilus rutilus GCA_951802655.1_fRutRut2.1_alternate_haplotype SAMEA11296543 PRJEB62671 2023-05-29
315 roach minnow (primary hap 2023)[IGV] Rutilus rutilus GCA_951802725.1_fRutRut2.1 SAMEA11296543 PRJEB62672 2023-05-30
316 rock gunnel (alternate hap 2021)[IGV] Pholis gunnellus GCA_910591705.2_fPhoGun1.2_alternate_haplotype SAMEA7522838 PRJEB45448 2021-11-18
317 rock gunnel (primary hap 2021)[IGV] Pholis gunnellus GCA_910591455.2_fPhoGun1.2 SAMEA7522838 PRJEB45449 2021-11-18
318 rohu (BAU-BD-2019 2022)[IGV] Labeo rohita GCF_022985175.1_IGBB_LRoh.1.0 SAMN15716776 PRJNA650519 2022-04-19
319 Rosablanca catfish (hap1 2023)[IGV] Trichomycterus rosablanca GCA_030014385.1_fTriRos1.hap1 SAMN32755940 PRJNA924296 2023-05-16
320 Rosablanca catfish (hap2 2023)[IGV] Trichomycterus rosablanca GCA_030015355.1_fTriRos1.hap2 SAMN32755940 PRJNA924297 2023-05-15
321 rudd (Europe DD20220513a primary hap 2022)[IGV] Scardinius erythrophthalmus GCA_024453875.1_ASM2445387v1 SAMN28618522 PRJNA841808 2022-07-27
322 rudd (fScaEry2.hap1.1 2024)[IGV] Scardinius erythrophthalmus GCA_964197995.1_fScaEry2.hap1.1 SAMEA11296541 PRJEB77366 2024-07-10
323 sablefish (Golden Eagle Sablefish UVic2021 2023)[IGV] Anoplopoma fimbria GCF_027596085.1_Afim_UVic_2022 SAMN30324849 PRJNA869752 2023-02-16
324 sailfin molly[IGV] Poecilia latipinna GCF_001443285.1_P_latipinna-1.0 SAMN02048973 PRJNA196862 2015-11-13
325 sansaifugu (HTHZ2018 2019)[IGV] Takifugu flavidus GCF_003711565.1_ASM371156v2 SAMN10077091 PRJNA491395 2019-08-16
326 sardine (primary hap 2023)[IGV] Sardina pilchardus GCA_963854185.1_fSarPil1.1 SAMEA111562172 PRJEB71085 2023-12-14
327 sardine (primary hap 2023)[IGV] Sardina pilchardus GCF_963854185.1_fSarPil1.1 SAMEA111562172 PRJEB71085 2023-12-14
328 scribbled pipefish (RoL2023-P3 2023)[IGV] Corythoichthys intestinalis GCF_030265065.1_ASM3026506v1 SAMN32966972 PRJNA851781 2023-06-20
329 Senegalese sole[IGV] Solea senegalensis GCF_019176455.1_IFAPA_SoseM_1 SAMN15430148 PRJNA643826 2021-07-09
330 shanny (alternate hap 2023)[IGV] Lipophrys pholis GCA_963383635.1_fLipPho2.1_alternate_haplotype SAMEA7522844 PRJEB65341 2023-08-26
331 shanny (primary hap 2023)[IGV] Lipophrys pholis GCA_963383615.1_fLipPho2.1 SAMEA7522844 PRJEB65340 2023-08-26
332 sheepshead minnow[IGV] Cyprinodon variegatus GCF_000732505.1_C_variegatus-1.0 SAMN02736898 PRJNA89149 2015-10-01
333 shortfin molly[IGV] Poecilia mexicana GCF_001443325.1_P_mexicana-1.0 SAMN02048972 PRJNA196869 2015-11-13
334 Siamese fighting fish (v4 primary hap 2023)[IGV] Betta splendens GCF_900634795.4_fBetSpl5.4 SAMEA104381735 PRJEB30365 2023-03-10
335 Siamese fighting fish (v5.1 alternate hap 2019)[IGV] Betta splendens GCA_900651605.1_fBetSpl5.1_alternate_haplotype SAMEA104381735 PRJEB30366 2019-02-07
336 Siamese fighting fish (v5.4 alternate hap 2023)[IGV] Betta splendens GCA_900651605.2_fBetSpl5.4_alternate_haplotype SAMEA104381735 PRJEB30366 2023-04-08
337 silver crucian carp (wild population from Czech Republic Cgi1373 2022)[IGV] Carassius gibelio GCF_023724105.1_carGib1.2-hapl.c SAMN23046545 PRJNA780760 2022-06-16
338 smalleye Pacific opah (hap1 2023)[IGV] Lampris incognitus GCA_029633845.1_fLamInc1.hap1 SAMN34060140 PRJNA951789 2023-04-07
339 smalleye Pacific opah (hap2 2023 refseq)[IGV] Lampris incognitus GCF_029633865.1_fLamInc1.hap2 SAMN34060140 PRJNA951788 2023-04-13
340 smallmouth bass[IGV] Micropterus dolomieu GCF_021292245.1_ASM2129224v1 SAMN22851699 PRJNA777359 2022-01-11
341 snake pipefish (RoL-2023_Sb 2023)[IGV] Entelurus aequoreus GCF_033978785.1_RoL_Eaeq_v1.1 SAMN37953738 PRJNA851781 2023-12-01
342 sockeye salmon (On170113-E2 v2 2019)[IGV] Oncorhynchus nerka GCF_006149115.2_Oner_1.1 SAMN11519041 PRJNA530256 2019-06-07
343 sockeye salmon (Pitt River 2024)[IGV] Oncorhynchus nerka GCF_034236695.1_Oner_Uvic_2.0 SAMN35642774 PRJNA530256 2024-01-08
344 South Georgia icefish[IGV] Pseudochaenichthys georgianus GCF_902827115.1_fPseGeo1.1 SAMEA104132832 PRJEB37648 2020-04-15
345 southern bluefin tuna (alternate hap 2021)[IGV] Thunnus maccoyii GCA_910596085.1_fThuMac1.1_alternate_haplotype SAMEA8654747 PRJEB46020 2021-07-07
346 southern bluefin tuna (primary hap 2021 refseq)[IGV] Thunnus maccoyii GCF_910596095.1_fThuMac1.1 SAMEA8654747 PRJEB46021 2021-07-07
347 southern platyfish[IGV] Xiphophorus maculatus GCF_002775205.1_X_maculatus-5.0-male SAMN08025980 PRJNA72525 2017-12-07
348 Southwestern China cavefish[IGV] Sinocyclocheilus anshuiensis GCF_001515605.1_SAMN03320099.WGS_v1.1 SAMN03320099 PRJNA274017 2015-12-14
349 spiny chromis (Palm Island Apoly-LR-REF 2022)[IGV] Acanthochromis polyacanthus GCF_021347895.1_KAUST_Apoly_ChrSc SAMN16534234 PRJNA671567 2022-01-11
350 spiny chromis (Palm Islands 2017)[IGV] Acanthochromis polyacanthus GCF_002109545.1_ASM210954v1 SAMN06347167 PRJNA311159 2017-04-25
351 spotted green pufferfish (2004)[IGV] Tetraodon nigroviridis GCA_000180735.1_ASM18073v1 SAMEA3138311 PRJNA12350 2004-05-14
352 spotted tilapia (v1 MD_Pm_ZW 2024)[IGV] Pelmatolapia mariae GCF_036321145.1_Pm_UMD_F SAMN37931306 PRJNA1031194 2024-01-31
353 spotted tilapia (v2 MD_Pm_ZW 2024)[IGV] Pelmatolapia mariae GCF_036321145.2_Pm_UMD_F_2 SAMN37931306 PRJNA1031194 2024-04-17
354 sterlet (maternal 2020)[IGV] Acipenser ruthenus GCA_902713425.1_fAciRut3.1_maternal_haplotype SAMEA5572864 PRJEB35912 2020-01-08
355 sterlet (paternal 2020)[IGV] Acipenser ruthenus GCA_902713435.1_fAciRut3.1_paternal_haplotype SAMEA5572864 PRJEB35913 2020-01-08
356 stone loach (alternate hap 2022)[IGV] Barbatula barbatula GCA_947034905.1_fBarBar1.1_alternate_haplotype SAMEA11296540 PRJEB56421 2022-10-08
357 stone loach (primary hap 2022)[IGV] Barbatula barbatula GCA_947034865.1_fBarBar1.1 SAMEA11296540 PRJEB56420 2022-10-07
358 stone moroko (DD20220531a primary hap 2022)[IGV] Pseudorasbora parva GCF_024679245.1_ASM2467924v1 SAMN28772710 PRJNA843929 2022-08-16
359 straightnose pipefish (RoL-2023_Sa 2023)[IGV] Nerophis ophidion GCF_033978795.1_RoL_Noph_v1.0 SAMN37953718 PRJNA851781 2023-12-01
360 striated frogfish (MH-2024 2024)[IGV] Antennarius striatus GCF_040054535.1_ASM4005453v1 SAMN40012617 PRJNA1078610 2024-06-04
361 striped catfish (fPanHyp1 alternate hap 2022)[IGV] Pangasianodon hypophthalmus GCA_027382375.1_fPanHyp1.alt SAMN32348883 PRJNA914798 2022-12-27
362 striped catfish (primary hap 2022 refseq)[IGV] Pangasianodon hypophthalmus GCF_027358585.1_fPanHyp1.pri SAMN32348883 PRJNA914796 2022-12-28
363 striped catfish Indonesia[IGV] Pangasianodon hypophthalmus GCF_009078355.1_GENO_Phyp_1.0 SAMN11969507 PRJNA547555 2019-10-22
364 striped catfish Vietnam[IGV] Pangasianodon hypophthalmus GCF_003671635.1_VN_pangasius SAMN08866743 PRJNA448819 2018-10-22
365 striped sea-bass[IGV] Morone saxatilis GCF_004916995.1_NCSU_SB_2.0 SAMN11399929 PRJNA532441 2019-04-26
366 Sumatra barb[IGV] Puntigrus tetrazona GCF_018831695.1_ASM1883169v1 SAMN17036344 PRJNA683758 2021-06-10
367 swamp eel[IGV] Monopterus albus GCF_001952655.1_M_albus_1.0 SAMN06219872 PRJNA183073 2017-01-17
368 swordfish[IGV] Xiphias gladius GCF_016859285.1_ASM1685928v1 SAMN16522248 PRJNA670841 2021-02-12
369 tambaqui[IGV] Colossoma macropomum GCF_904425465.1_Colossoma_macropomum SAMEA7302664 PRJEB40318 2020-09-25
370 thickback sole (primary hap 2023)[IGV] Microchirus variegatus GCA_963457635.1_fMicVar1.1 SAMEA12219470 PRJEB66144 2023-09-20
371 thicklip grey mullet (primary hap 2023)[IGV] Chelon labrosus GCA_963514085.1_fCheLab1.1 SAMEA111562027 PRJEB66430 2023-09-29
372 three-spined stickleback[IGV] Gasterosteus aculeatus aculeatus GCF_016920845.1_GAculeatus_UGA_version5 SAMN15223905 PRJNA639125 2021-02-23
373 tidewater goby (DKJ021-1_F 2022)[IGV] Eucyclogobius newberryi GCA_026437355.1_fEucNew1.0.hap2 SAMN31536049 PRJNA896218 2022-11-28
374 tidewater goby (DKJ021-1_F 2022)[IGV] Eucyclogobius newberryi GCA_026437365.1_fEucNew1.0.hap1 SAMN31536049 PRJNA896219 2022-11-28
375 tiger tail seahorse (QL1 v2 2016)[IGV] Hippocampus comes GCF_001891065.2_H_comes_QL1_v1.1 SAMN04531611 PRJNA314292 2016-12-08
376 tongue sole[IGV] Cynoglossus semilaevis GCF_000523025.1_Cse_v1.0 SAMN02595200 PRJNA73987 2014-01-28
377 torafugu (alternate hap 2019)[IGV] Takifugu rubripes GCA_901000745.3_fTakRub1.2_alternate_haplotype SAMEA104384834 PRJEB31989 2019-06-05
378 torafugu (fTakRub1.2 2019 refseq)[IGV] Takifugu rubripes GCF_901000725.2_fTakRub1.2 SAMEA104384834 PRJEB31988 2019-06-05
379 torafugu (fTakRub1.3 2021 genbank)[IGV] Takifugu rubripes GCA_901000725.3_fTakRub1.3 SAMEA104384834 PRJEB31988 2021-04-24
380 trahira (fHopMal1hap1 2024)[IGV] Hoplias malabaricus GCF_029633855.1_fHopMal1.hap1 SAMN32740525 PRJNA923842 2024-06-25
381 trahira (hap2 2023)[IGV] Hoplias malabaricus GCA_029633875.1_fHopMal1.hap2 SAMN32740525 PRJNA923843 2023-04-13
382 trahira (v2 hap1 2024)[IGV] Hoplias malabaricus GCA_029633855.2_fHopMal1.hap1 SAMN32740525 PRJNA923842 2024-06-25
383 turbot (primary hap 2023)[IGV] Scophthalmus maximus GCA_963854745.1_fScoMax1.1 SAMEA110450106 PRJEB70830 2023-12-15
384 turbot (ysfricsl-2021 2022)[IGV] Scophthalmus maximus GCF_022379125.1_ASM2237912v1 SAMN24450573 PRJNA792617 2022-02-24
385 turquoise killifish (GRZ 2015)[IGV] Nothobranchius furzeri GCF_001465895.1_Nfu_20140520 SAMEA2698544 PRJEB5837 2015-12-11
386 turquoise killifish (MZM-0403 2023)[IGV] Nothobranchius furzeri GCF_027789165.1_UI_Nfuz_MZM_1.0 SAMN31358047 PRJNA891775 2023-01-12
387 walking catfish (CIFAMagur01 2020)[IGV] Clarias magur GCA_013621035.1_C_magur1.0 SAMN08826798 PRJNA448280 2020-07-24
388 walleye pollock (NIFS_2021 2022)[IGV] Gadus chalcogrammus GCF_026213295.1_NIFS_Gcha_1.0 SAMN19652023 PRJNA736536 2022-11-18
389 warty frogfish (fAntMac1 alternate hap 2020)[IGV] Antennarius maculatus GCA_013347815.1_fAntMac1.alt SAMN12623626 PRJNA561980 2020-06-12
390 warty frogfish (fAntMac1 primary hap 2020)[IGV] Antennarius maculatus GCA_013358685.1_fAntMac1.pri SAMN12623626 PRJNA561983 2020-06-18
391 western mosquitofish[IGV] Gambusia affinis GCF_019740435.1_SWU_Gaff_1.0 SAMN13752108 PRJNA599452 2021-08-25
392 western speckled dace (OS25496 2023)[IGV] Rhinichthys klamathensis goyatoka GCF_029890125.1_OSU_Roscu_1.1 SAMN33577524 PRJNA934901 2023-04-27
393 White Sands pupfish[IGV] Cyprinodon tularosa GCF_016077235.1_ASM1607723v1 SAMN16509697 PRJNA670474 2020-12-15
394 wolf-eel[IGV] Anarrhichthys ocellatus GCF_004355925.1_GSC_Weel_1.0 SAMN10245424 PRJNA496475 2019-03-08
395 woolly sculpin (alternate hap CAN_PGR_092001 2022)[IGV] Clinocottus analis GCA_023055415.1_fCliAna1.0.a SAMN26368113 PRJNA819175 2022-04-19
396 woolly sculpin (CAN_PGR_092001 2022)[IGV] Clinocottus analis GCA_023055335.1_fCliAna1.0.p SAMN26368113 PRJNA819176 2022-04-19
397 woolly sculpin (CAN_PGR_092001 primary hap 2022)[IGV] Clinocottus analis GCF_023055335.1_fCliAna1.0.p SAMN26368113 PRJNA819176 2022-04-19
398 worm pipefish (RoL_2023-P1 2023)[IGV] Nerophis lumbriciformis GCF_033978685.1_RoL_Nlum_1.0 SAMN37908378 PRJNA851781 2023-11-29
399 Wuchang bream[IGV] Megalobrama amblycephala GCF_018812025.1_ASM1881202v1 SAMN18522313 PRJNA343584 2021-06-09
400 Yangtze koukloug (SWU-2019 2020)[IGV] Onychostoma macrolepis GCF_012432095.1_ASM1243209v1 SAMN14163390 PRJNA608076 2020-04-17
401 yellow catfish (hzauxx_2018 2022)[IGV] Tachysurus fulvidraco GCF_022655615.1_HZAU_PFXX_2.0 SAMN10031298 PRJNA489116 2022-03-21
402 yellow catfish (Tf-2017 2018)[IGV] Tachysurus fulvidraco GCF_003724035.1_ASM372403v1 SAMN10147840 PRJNA494039 2018-11-13
403 yellow perch (YP-PL-M2 2019)[IGV] Perca flavescens GCF_004354835.1_PFLA_1.0 SAMN10722690 PRJNA514308 2019-03-19
404 yellowfin seabream (v.2019 alternate hap 2020)[IGV] Acanthopagrus latus GCA_904848175.1_fAcaLat1.1_alternate_haplotype SAMN16236878 PRJEB40701 2020-10-12
405 yellowfin seabream (v.2019 primary hap 2020)[IGV] Acanthopagrus latus GCF_904848185.1_fAcaLat1.1 SAMN16236878 PRJEB40700 2020-10-12
406 yellowfin tuna (alternate hap 2021)[IGV] Thunnus albacares GCA_914744365.1_fThuAlb1.1_alternate_haplotype SAMEA8654749 PRJEB47266 2021-09-15
407 yellowfin tuna (primary hap 2021)[IGV] Thunnus albacares GCF_914725855.1_fThuAlb1.1 SAMEA8654749 PRJEB47267 2021-09-16
408 yellowtail amberjack (v2 SW California HSWRI2012SDOR001 2017)[IGV] Seriola lalandi dorsalis GCF_002814215.2_Sedor1 SAMN04902367 PRJNA319656 2017-12-08
409 Zealand spotty[IGV] Notolabrus celidotus GCF_009762535.1_fNotCel1.pri SAMN12623201 PRJNA561956 2019-12-18
410 zebra mbuna[IGV] Maylandia zebra GCF_000238955.4_M_zebra_UMD2a SAMN03892560 PRJNA60369 2018-04-10
411 zebrafish (fDanRer4 alternate hap 2022)[IGV] Danio rerio GCA_944039255.1_fDanRer4.1_alternate_haplotype SAMEA14088276 PRJEB53408 2022-06-17
412 zebrafish (fDanRer4 primary hap 2022)[IGV] Danio rerio GCA_944039275.1_fDanRer4.1 SAMEA14088276 PRJEB53407 2022-06-24
413 zebrafish (T5D 2021)[IGV] Danio rerio GCA_018400075.1_ASM1840007v1 SAMN09710566 PRJNA482650 2021-05-19
414 zebrafish (WGS:CAHPTA01 2020)[IGV] Danio rerio GCA_903684865.1_fDreABH1.1 SAMEA4760846 PRJEB38589 2020-06-28
415 zebrafish (WGS:CAHPTB02 2020)[IGV] Danio rerio GCA_903684855.2_fDreTuH1.2 SAMEA4760849 PRJEB38588 2020-07-31
416 zebrafish GRCz11[IGV] Danio rerio GCF_000002035.6_GRCz11 SAMN06930106 PRJNA11776 2017-05-09
417 zig-zag eel (alternate hap)[IGV] Mastacembelus armatus GCA_900700395.1_fMasArm1.2_alternate_haplotype SAMEA104026378 PRJEB31553 2019-04-01
418 zig-zag eel (v1.2 2019 refseq)[IGV] Mastacembelus armatus GCF_900324485.2_fMasArm1.2 SAMEA104026378 PRJEB25769 2019-03-16
419 zig-zag eel (v1.3 2021 genbank)[IGV] Mastacembelus armatus GCA_900324485.3_fMasArm1.3 SAMEA104026378 PRJEB25769 2021-04-24

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 218 assemblies assembly stats track stats
Mammals 564 assemblies assembly stats track stats
Birds 393 assemblies assembly stats track stats
Fishes 419 assemblies assembly stats track stats
other vertebrates 269 assemblies assembly stats track stats
Invertebrates 1103 assemblies assembly stats track stats
Plants 303 assemblies assembly stats track stats
Fungi 899 assemblies assembly stats track stats
Viruses 287 assemblies assembly stats track stats
Bacteria 107 assemblies assembly stats track stats
legacy/superseded 522 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 952 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats
BRC - BRC Analytics - Bioinformatics Research Center 769 assemblies assembly stats track stats