Bacteria Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of bacteria only.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser
[IGV browser]
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
1 'Bacillus of abortion' Bang 1897 (544 2013)[IGV] Brucella abortus 544 GCF_000369945.1_Bruc_abor_544_V1 SAMN00839704 PRJNA173507 2013-04-19
2 Acetivibrio thermocellus DSM 2360 (LQRI 2016)[IGV] Acetivibrio thermocellus DSM 2360 GCF_001692755.1_ASM169275v1 SAMN05210905 PRJNA324615 2016-07-22
3 Acinetobacter baumannii (17978UN 2021)[IGV] Acinetobacter baumannii GCF_019356215.1_ASM1935621v1 SAMN20326334 PRJNA748365 2021-07-27
4 Acinetobacter baumannii (AB5075-UW 2015)[IGV] Acinetobacter baumannii GCF_000963815.1_ASM96381v1 SAMN02894434 PRJNA243297 2015-03-27
5 Acinetobacter baumannii (ATCC 17978 2007)[IGV] Acinetobacter baumannii ATCC 17978 GCF_000015425.1_ASM1542v1 SAMN02604331 PRJNA17477 2007-03-01
6 Acinetobacter baumannii (ATCC 17978 2021)[IGV] Acinetobacter baumannii ATCC 17978 GCA_902728005.1_Acinetobacter_baumannii_ATCC17978 SAMEA6463085 PRJEB36129 2021-03-25
7 Acinetobacter baumannii (ATCC 17978-mff 2015)[IGV] Acinetobacter baumannii GCF_001077675.1_ASM107767v1 SAMN03817043 PRJNA288605 2015-07-14
8 Acinetobacter baumannii (ATCC 19606 2016)[IGV] Acinetobacter baumannii GCA_900011295.1_ATCC19606_assembly SAMEA3650403 PRJEB10709 2016-04-11
9 Actinobacillus pleuropneumoniae serovar 5b (L20 2007)[IGV] Actinobacillus pleuropneumoniae serovar 5b str. L20 GCA_000015885.1_ASM1588v1 SAMN02603665 PRJNA18221 2007-02-23
10 Aeromonas hydrophila subsp. hydrophila (ATCC 7966 2006)[IGV] Aeromonas hydrophila subsp. hydrophila ATCC 7966 GCF_000014805.1_ASM1480v1 SAMN02604052 PRJNA16697 2006-11-06
11 Allokutzneria albata (DSM 44149 2016)[IGV] Allokutzneria albata GCF_900103775.1_IMG-taxon_2634166198_annotated_assembly SAMN04489726 PRJEB16194 2016-10-20
12 Anaplasma centrale str. (Israel 2009)[IGV] Anaplasma centrale str. Israel GCF_000024505.1_ASM2450v1 SAMN02604279 PRJNA32765 2009-11-24
13 Anaplasma marginale (Palmeira 2018)[IGV] Anaplasma marginale GCA_003515675.1_ASM351567v1 SAMN05913817 PRJNA348690 2018-09-10
14 Anaplasma marginale str. (Florida 2009)[IGV] Anaplasma marginale str. Florida GCF_000020305.1_ASM2030v1 SAMN02604306 PRJNA16369 2009-02-03
15 Anaplasma marginale str. (St. Maries 2004)[IGV] Anaplasma marginale str. St. Maries GCF_000011945.1_ASM1194v1 SAMN02604305 PRJNA40 2004-12-08
16 Anaplasma marginale str. (St. Maries 2011)[IGV] Anaplasma marginale str. St. Maries GCF_000215525.1_ASM21552v2 SAMN02469627 PRJNA64635 2011-05-31
17 Anaplasma phagocytophilum str. (HGE1 2013)[IGV] Anaplasma phagocytophilum str. HGE1 GCA_000478425.1_ASM47842v1 SAMN02471893 PRJNA171710 2013-04-23
18 Anaplasma phagocytophilum str. (Webster 2015)[IGV] Anaplasma phagocytophilum str. Webster GCF_000964685.1_ASM96468v1 SAMN02666091 PRJNA212447 2015-03-27
19 Arthrobacter sp. SLBN-53 (NRRL B-3805 2016)[IGV] Mycolicibacterium neoaurum GCA_001580405.1_ASM158040v1 SAMN03396774 PRJNA266535 2016-03-07
20 Bacillus anthracis str. 'Ames Ancestor' (Ames Ancestor; A2084 2004)[IGV] Bacillus anthracis str. 'Ames Ancestor' GCF_000008445.1_ASM844v1 SAMN02603433 PRJNA10784 2004-07-09
21 Bacillus mojavensis (PS17 2020)[IGV] Bacillus mojavensis GCA_016413745.1_ASM1641374v1 SAMN17051132 PRJNA684065 2020-12-28
22 Bacillus subtilis (NCD-2 2017)[IGV] Bacillus subtilis subsp. subtilis GCA_002556525.1_ASM255652v1 SAMN07672787 PRJNA408006 2017-10-16
23 Bacillus subtilis strain 168[IGV] Bacillus subtilis subsp. subtilis str. 168 GCF_000009045.1_ASM904v1 SAMEA3138188 PRJNA76 2009-08-12
24 bacteria G.metallireducens (GS-15 2005)[IGV] Geobacter metallireducens GS-15 GCF_000012925.1_ASM1292v1 SAMN02598399 PRJNA177 2005-10-28
25 bacteria L.abararensis (201903074 2021)[IGV] Leptospira abararensis GCF_016918735.1_ASM1691873v1 SAMN17767093 PRJNA480513 2021-02-22
26 bacteria L.adleri (FH2-B-D1 2017)[IGV] Leptospira adleri GCF_002811985.1_ASM281198v1 SAMN07411422 PRJNA395546 2017-12-05
27 bacteria L.ainazelensis (201903071 2021)[IGV] Leptospira ainazelensis GCF_016918785.1_ASM1691878v1 SAMN17767091 PRJNA480513 2021-02-22
28 bacteria L.ainlahdjerensis (201903070 2021)[IGV] Leptospira ainlahdjerensis GCF_016919175.1_ASM1691917v1 SAMN17767090 PRJNA480513 2021-02-22
29 bacteria L.alexanderi serovar Manhao 3 str. (L 60 2013)[IGV] Leptospira alexanderi serovar Manhao 3 str. L 60 GCF_000243815.2_gls454062v02 SAMN02436435 PRJNA74069 2013-08-07
30 bacteria L.alstonii serovar Sichuan str. (79601 2013)[IGV] Leptospira alstonii serovar Sichuan str. 79601 GCF_000347175.1_gls454194v01 SAMN01801604 PRJNA177155 2013-03-15
31 bacteria L.andrefontaineae (201800301 2019)[IGV] Leptospira andrefontaineae GCF_004770105.1_ASM477010v1 SAMN10316440 PRJNA480513 2019-04-10
32 bacteria L.bandrabouensis (201601109 2019)[IGV] Leptospira bandrabouensis GCF_004770555.1_ASM477055v1 SAMN10316366 PRJNA480513 2019-04-10
33 bacteria L.barantonii (FH4-C-A1 2017)[IGV] Leptospira barantonii GCF_002811925.1_ASM281192v1 SAMN07411424 PRJNA395546 2017-12-05
34 bacteria L.biflexa serovar strain 'Patoc (Patoc 1 Paris 2008)[IGV] Leptospira biflexa serovar Patoc strain 'Patoc 1 GCF_000017685.1_ASM1768v1 SAMN02603347 PRJNA20133 2008-02-13
35 bacteria L.borgpetersenii serovar Ceylonica (Piyasena 2018)[IGV] Leptospira borgpetersenii serovar Ceylonica GCF_003516145.1_ASM351614v1 SAMN08498447 PRJNA401006 2018-09-10
36 bacteria L.bourretii (201800267 2019)[IGV] Leptospira bourretii GCF_004770145.1_ASM477014v1 SAMN10316416 PRJNA480513 2019-04-10
37 bacteria L.bouyouniensis (201800295 2019)[IGV] Leptospira bouyouniensis GCF_004770625.1_ASM477062v1 SAMN10316435 PRJNA480513 2019-04-10
38 bacteria L.brenneri (201800277 2019)[IGV] Leptospira brenneri GCF_004769295.1_ASM476929v1 SAMN10316423 PRJNA480513 2019-04-10
39 bacteria L.broomii serovar Hurstbridge str. (5399 2013)[IGV] Leptospira broomii serovar Hurstbridge str. 5399 GCF_000243715.2_gls454050v02 SAMN02436587 PRJNA74059 2013-08-07
40 bacteria L.chreensis (201903075 2021)[IGV] Leptospira chreensis GCF_016919165.1_ASM1691916v1 SAMN17767092 PRJNA480513 2021-02-22
41 bacteria L.cinconiae (WS58.C1 2024)[IGV] Leptospira cinconiae GCF_040833995.1_ASM4083399v1 SAMN42533264 PRJNA1136487 2024-07-25
42 bacteria L.congkakensis (201702421 2019)[IGV] Leptospira congkakensis GCF_004770265.1_ASM477026v1 SAMN10316396 PRJNA480513 2019-04-10
43 bacteria L.dzoumogneensis (201601113 2019)[IGV] Leptospira dzoumogneensis GCF_004770895.1_ASM477089v1 SAMN10316368 PRJNA480513 2019-04-10
44 bacteria L.ellinghausenii (E18 2018)[IGV] Leptospira ellinghausenii GCF_003114815.1_ASM311481v1 SAMD00111975 PRJDB6680 2018-03-17
45 bacteria L.fainei serovar Hurstbridge str. (BUT 6 2013)[IGV] Leptospira fainei serovar Hurstbridge str. BUT 6 GCF_000306235.2_gls454058v2.0 SAMN02436574 PRJNA167230 2013-06-21
46 bacteria L.fletcheri (SSW15 2019)[IGV] Leptospira fletcheri GCF_004769195.1_ASM476919v1 SAMN10316445 PRJNA480513 2019-04-10
47 bacteria L.fluminis (SCS5 2019)[IGV] Leptospira fluminis GCF_004771275.1_ASM477127v1 SAMN10316443 PRJNA480513 2019-04-10
48 bacteria L.gomenensis (201800299 2019)[IGV] Leptospira gomenensis GCF_004770155.1_ASM477015v1 SAMN10316438 PRJNA480513 2019-04-10
49 bacteria L.haakeii (ATI7-C-A2 2017)[IGV] Leptospira haakeii GCF_002812225.1_ASM281222v1 SAMN07411408 PRJNA395546 2017-12-05
50 bacteria L.harrisiae (FH2-B-A1 2017)[IGV] Leptospira harrisiae GCF_002811945.1_ASM281194v1 SAMN07411419 PRJNA395546 2017-12-05
51 bacteria L.hartskeerlii (MCA2-B-A3 2017)[IGV] Leptospira hartskeerlii GCF_002811475.1_ASM281147v1 SAMN07411431 PRJNA395546 2017-12-05
52 bacteria L.idonii (201300427 2019)[IGV] Leptospira idonii GCF_004770995.1_ASM477099v1 SAMN10316364 PRJNA480513 2019-04-10
53 bacteria L.ilyithenensis (201400974 2019)[IGV] Leptospira ilyithenensis GCF_004771005.1_ASM477100v1 SAMN10316365 PRJNA480513 2019-04-10
54 bacteria L.inadai serovar Lyme str. (10 2013)[IGV] Leptospira inadai serovar Lyme str. 10 GCF_000243675.2_gls454047v02 SAMN02436595 PRJNA74055 2013-08-07
55 bacteria L.interrogans serovar Copenhageni (FDAARGOS_203 2018)[IGV] Leptospira interrogans serovar Copenhageni GCF_002073495.2_ASM207349v2 SAMN04875540 PRJNA231221 2018-03-01
56 bacteria L.jelokensis (201702419 2019)[IGV] Leptospira jelokensis GCF_004769775.1_ASM476977v1 SAMN10316395 PRJNA480513 2019-04-10
57 bacteria L.johnsonii (E8 2018)[IGV] Leptospira johnsonii GCF_003112675.1_ASM311267v1 SAMD00111974 PRJDB6680 2018-03-17
58 bacteria L.kanakyensis (201800292 2019)[IGV] Leptospira kanakyensis GCF_004769235.1_ASM476923v1 SAMN10316432 PRJNA480513 2019-04-10
59 bacteria L.kemamanensis (201702454 2019)[IGV] Leptospira kemamanensis GCF_004769665.1_ASM476966v1 SAMN10316406 PRJNA480513 2019-04-10
60 bacteria L.kirschneri serovar Cynopteri str. (3522 CT 2013)[IGV] Leptospira kirschneri serovar Cynopteri str. 3522 CT GCF_000243695.2_gls454049v02 SAMN02436434 PRJNA74057 2013-06-21
61 bacteria L.kmetyi (LS 001/16 2018)[IGV] Leptospira kmetyi GCF_003722295.1_ASM372229v1 SAMN10390430 PRJNA504370 2018-11-13
62 bacteria L.kobayashii (E30 2021)[IGV] Leptospira kobayashii GCF_003114835.2_ASM311483v3 SAMD00111976 PRJDB6680 2021-09-09
63 bacteria L.koniambonensis (201800265 2019)[IGV] Leptospira koniambonensis GCF_004769555.1_ASM476955v1 SAMN10316414 PRJNA480513 2019-04-10
64 bacteria L.langatensis (SSW18 2019)[IGV] Leptospira langatensis GCF_004770615.1_ASM477061v1 SAMN10316447 PRJNA480513 2019-04-10
65 bacteria L.levettii (MCA2-B-A1 2017)[IGV] Leptospira levettii GCF_002812085.1_ASM281208v1 SAMN07411430 PRJNA395546 2017-12-05
66 bacteria L.licerasiae (ATCC BAA-1110 2014)[IGV] Leptospira licerasiae ATCC BAA-1110 GCF_000526875.1_ASM52687v1 SAMN02585001 PRJNA223035 2014-01-14
67 bacteria L.limi (VSF25 2022)[IGV] Leptospira limi GCF_026151395.1_ASM2615139v1 SAMN28772817 PRJNA843593 2022-11-11
68 bacteria L.mayottensis (200901116 2018)[IGV] Leptospira mayottensis 200901116 GCF_000306675.2_ASM30667v3 SAMN02436412 PRJNA167259 2018-12-21
69 bacteria L.meyeri (DSM 21537 2019)[IGV] Leptospira meyeri GCF_004368965.1_ASM436896v1 SAMN07621512 PRJNA402518 2019-03-22
70 bacteria L.montravelensis (201800278 2019)[IGV] Leptospira montravelensis GCF_004770045.1_ASM477004v1 SAMN10316424 PRJNA480513 2019-04-10
71 bacteria L.mtsangambouensis (201601298 2019)[IGV] Leptospira mtsangambouensis GCF_004770475.1_ASM477047v1 SAMN10316376 PRJNA480513 2019-04-10
72 bacteria L.neocaledonica (ES4-C-A1 2017)[IGV] Leptospira neocaledonica GCF_002812205.1_ASM281220v1 SAMN07411416 PRJNA395546 2017-12-05
73 bacteria L.noguchii serovar Panama str. (CZ214 2013)[IGV] Leptospira noguchii serovar Panama str. CZ214 GCF_000306255.2_gls454059v02 SAMN02436411 PRJNA167231 2013-08-07
74 bacteria L.noumeaensis (201800287 2019)[IGV] Leptospira noumeaensis GCF_004770765.1_ASM477076v1 SAMN10316428 PRJNA480513 2019-04-10
75 bacteria L.ognonensis (201702476 2019)[IGV] Leptospira ognonensis GCF_004770745.1_ASM477074v1 SAMN10316409 PRJNA480513 2019-04-10
76 bacteria L.paudalimensis (VSF14 2022)[IGV] Leptospira paudalimensis GCF_026151345.1_ASM2615134v1 SAMN28772821 PRJNA843593 2022-11-11
77 bacteria L.perdikensis (201702692 2019)[IGV] Leptospira perdikensis GCF_004769575.1_ASM476957v1 SAMN10316412 PRJNA480513 2019-04-10
78 bacteria L.perolatii (FH1-B-B1 2017)[IGV] Leptospira perolatii GCF_002811875.1_ASM281187v1 SAMN07411417 PRJNA395546 2017-12-05
79 bacteria L.ryugenii (YH101 2018)[IGV] Leptospira ryugenii GCF_003114855.1_ASM311485v1 SAMD00111977 PRJDB6680 2018-03-17
80 bacteria L.saintgironsiae (FH4-C-A2 2017)[IGV] Leptospira saintgironsiae GCF_002811765.1_ASM281176v1 SAMN07411425 PRJNA395546 2017-12-05
81 bacteria L.sanjuanensis (LGVF02 2022)[IGV] Leptospira sanjuanensis GCF_022267325.1_ASM2226732v1 SAMN21855215 PRJNA766613 2022-02-16
82 bacteria L.santarosai serovar Shermani str. (LT 821 2014)[IGV] Leptospira santarosai serovar Shermani str. LT 821 GCF_000313175.2_ASM31317v2 SAMN02470123 PRJNA47139 2014-10-08
83 bacteria L.sarikeiensis (201702455 2019)[IGV] Leptospira sarikeiensis GCF_004769615.1_ASM476961v1 SAMN10316407 PRJNA480513 2019-04-10
84 bacteria L.selangorensis (SSW17 2019)[IGV] Leptospira selangorensis GCF_004769405.1_ASM476940v1 SAMN10316446 PRJNA480513 2019-04-10
85 bacteria L.semungkisensis (SSS9 2019)[IGV] Leptospira semungkisensis GCF_004770055.1_ASM477005v1 SAMN10316449 PRJNA480513 2019-04-10
86 bacteria L.soteropolitanensis (VSF16 2022)[IGV] Leptospira soteropolitanensis GCF_026151335.1_ASM2615133v1 SAMN28772823 PRJNA843593 2022-11-11
87 bacteria L.stimsonii (AMB6-RJ 2018)[IGV] Leptospira stimsonii GCF_003545875.1_ASM354587v1 SAMN09220899 PRJNA471857 2018-09-11
88 bacteria L.terpstrae serovar Hualin str. ATCC 700639 (LT 11-33 2013)[IGV] Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639 GCF_000332495.1_gls454203v02 SAMN02436484 PRJNA178717 2013-04-08
89 bacteria L.tipperaryensis (GWTS#1 2016)[IGV] Leptospira tipperaryensis GCF_001729245.1_ASM172924v1 SAMN04546715 PRJNA315006 2016-09-16
90 bacteria L.vanthielii (201601955 2019)[IGV] Leptospira vanthielii GCF_004770365.1_ASM477036v1 SAMN10316381 PRJNA480513 2019-04-10
91 bacteria L.venezuelensis (CLM-U50 2017)[IGV] Leptospira venezuelensis GCF_002150035.1_ASM215003v1 SAMN06855518 PRJNA374022 2017-05-19
92 bacteria L.weilii (CUDO6 2019)[IGV] Leptospira weilii GCF_006874765.1_ASM687476v1 SAMN11936708 PRJNA545906 2019-07-11
93 bacteria L.wolbachii serovar Codice str. (CDC 2013)[IGV] Leptospira wolbachii serovar Codice str. CDC GCF_000332515.2_gls454195v02 SAMN02436569 PRJNA177156 2013-05-17
94 bacteria L.wolffii (201800291 2019)[IGV] Leptospira wolffii GCF_004770635.1_ASM477063v1 SAMN10316431 PRJNA480513 2019-04-10
95 bacteria L.yanagawae (201800272 2019)[IGV] Leptospira yanagawae GCF_004769275.1_ASM476927v1 SAMN10316418 PRJNA480513 2019-04-10
96 bacteria L.yasudae (F1 2018)[IGV] Leptospira yasudae GCF_003545925.1_ASM354592v1 SAMN09216371 PRJNA471857 2018-09-11
97 Bdellovibrio bacteriovorus (HD100 2004)[IGV] Bdellovibrio bacteriovorus HD100 GCF_000196175.1_ASM19617v1 SAMEA3138335 PRJNA9637 2004-02-10
98 Bordetella pertussis (H640 2019)[IGV] Bordetella pertussis GCF_004008975.1_ASM400897v1 SAMN08136977 PRJNA279196 2019-01-09
99 Brucella anthropi (PBO 2020)[IGV] Brucella anthropi GCF_015326295.1_ASM1532629v1 SAMN16619790 PRJNA673670 2020-11-10
100 Brucella canis (ATCC 23365 2007)[IGV] Brucella canis ATCC 23365 GCF_000018525.1_ASM1852v1 SAMN02604295 PRJNA20243 2007-11-29
101 Brucella ceti (DDE002 2025)[IGV] Brucella ceti GCF_047324105.1_ASM4732410v1 SAMN45131998 PRJNA1193103 2025-01-31
102 Brucella ciceri (DSM 22292 2024)[IGV] Brucella ciceri GCF_041930145.1_ASM4193014v1 SAMN15236481 PRJNA638390 2024-09-15
103 Brucella cytisi (ESC1 2024)[IGV] Brucella cytisi GCF_038433355.1_ASM3843335v1 SAMN40981466 PRJNA1100909 2024-04-23
104 Brucella daejeonensis (DSM 26944 2020)[IGV] Brucella daejeonensis GCF_014199265.1_ASM1419926v1 SAMN12025165 PRJNA546777 2020-08-14
105 Brucella endophytica (CGMCC 1.15082 2020)[IGV] Brucella endophytica GCF_014640615.1_ASM1464061v1 SAMD00245013 PRJDB10509 2020-09-12
106 Brucella gallinifaecis (ISO 196 2019)[IGV] Brucella gallinifaecis GCF_006476605.1_ASM647660v1 SAMN11998090 PRJNA547463 2019-06-24
107 Brucella grignonensis (OgA9a 2017)[IGV] Brucella grignonensis GCF_002252505.1_ASM225250v1 SAMN07258023 PRJNA391102 2017-08-15
108 Brucella haematophila (CCUG 38531 2019)[IGV] Brucella haematophila GCF_005938105.1_ASM593810v1 SAMN11855631 PRJNA544772 2019-06-03
109 Brucella intermedia (NCTC12171 2018)[IGV] Brucella intermedia GCF_900454225.1_34576_H01 SAMEA3146534 PRJEB6403 2018-08-01
110 Brucella lupini (LUP21 2017)[IGV] Brucella lupini GCF_002252535.1_ASM225253v1 SAMN07259926 PRJNA391246 2017-08-15
111 Brucella melitensis bv. 1 str. (16M 2001)[IGV] Brucella melitensis bv. 1 str. 16M GCF_000007125.1_ASM712v1 SAMN02603416 PRJNA180 2001-12-28
112 Brucella microti (CCM 4915 2009)[IGV] Brucella microti CCM 4915 GCF_000022745.1_ASM2274v1 SAMN02603148 PRJNA32233 2009-08-18
113 Brucella neotomae (NCTC10084 2018)[IGV] Brucella neotomae GCF_900446125.1_57572_C01 SAMEA104210778 PRJEB6403 2018-08-07
114 Brucella oryzae (DSM 17471 2024)[IGV] Brucella oryzae GCF_041929965.1_ASM4192996v1 SAMN15236488 PRJNA638390 2024-09-15
115 Brucella ovis (ATCC 25840 2007)[IGV] Brucella ovis ATCC 25840 GCF_000016845.1_ASM1684v1 SAMN02604024 PRJNA12514 2007-05-30
116 Brucella pecoris (08RB2639 2019)[IGV] Brucella pecoris GCF_006376675.1_ASM637667v1 SAMN11998268 PRJNA548045 2019-06-16
117 Brucella pituitosa (BU72 2017)[IGV] Brucella pituitosa GCF_002803535.1_ASM280353v1 SAMN08100214 PRJNA419894 2017-12-03
118 Brucella pseudintermedia (ASAG-D25 2022)[IGV] Brucella pseudintermedia GCF_025118245.1_ASM2511824v1 SAMN29388680 PRJNA853445 2022-09-09
119 Brucella pseudogrignonensis (ESL2 2022)[IGV] Brucella pseudogrignonensis GCF_022024335.1_ASM2202433v1 SAMN25525416 PRJNA802309 2022-02-07
120 Brucella rhizosphaerae (PR17 2017)[IGV] Brucella rhizosphaerae GCF_002252475.1_ASM225247v1 SAMN07258022 PRJNA391102 2017-08-15
121 Brucella suis (1330 2005)[IGV] Brucella suis 1330 GCF_000007505.1_ASM750v1 SAMN02603682 PRJNA320 2005-01-03
122 Brucella suis (ATCC 23445 2007)[IGV] Brucella suis ATCC 23445 GCF_000018905.1_ASM1890v1 SAMN02604298 PRJNA20371 2007-12-20
123 Brucella thiophenivorans (DSM 7216 2017)[IGV] Brucella thiophenivorans GCF_002252445.1_ASM225244v1 SAMN07258021 PRJNA391102 2017-08-15
124 Brucella tritici (TA93 2019)[IGV] Brucella tritici GCF_008932285.1_ASM893228v1 SAMN12821300 PRJNA573682 2019-10-09
125 Burkholderia mallei (ATCC 23344 2023)[IGV] Burkholderia mallei GCF_033956065.1_ASM3395606v1 SAMN34156470 PRJNA954830 2023-11-27
126 Burkholderia multivorans (ATCC 17616 2007)[IGV] Burkholderia multivorans ATCC 17616 GCA_000018505.1_ASM1850v1 SAMN00623032 PRJNA17407 2007-11-15
127 Burkholderia pseudomallei (GTC3P0254T 2023)[IGV] Burkholderia pseudomallei GCF_030297255.1_ASM3029725v1 SAMD00592127 PRJDB15627 2023-05-16
128 Campylobacter jejuni subsp. jejuni ATCC 700819 (NCTC 11168 2003)[IGV] Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 GCF_000009085.1_ASM908v1 n/a PRJNA8 2001-09-27
129 Candidatus Rickettsia colombianensi (Adcor 2 2018)[IGV] Candidatus Rickettsia colombianensi GCF_003664375.1_ASM366437v1 SAMN10135122 PRJNA493498 2018-10-16
130 Candidatus Rickettsia kedanie (KNCP2-13 2024)[IGV] Candidatus Rickettsia kedanie GCF_045865205.1_ASM4586520v1 SAMD00735187 PRJDB17403 2024-08-07
131 Candidatus Vesicomyosocius sp. (SY067_SCS001 2020)[IGV] Candidatus Vesicomyosocius sp. SY067_SCS001 GCF_014706615.1_ASM1470661v1 SAMN14814675 PRJNA629897 2020-09-23
132 Chlamydia trachomatis (L2/434/Bu 2008)[IGV] Chlamydia trachomatis L2/434/Bu GCF_000068585.1_ASM6858v1 SAMEA1705923 PRJNA28583 2008-01-17
133 chlamydias (6BC 2011)[IGV] Chlamydia psittaci 6BC GCF_000204255.1_ASM20425v1 SAMN02603382 PRJNA62889 2011-04-14
134 Clostridioides difficile (630 2017)[IGV] Clostridioides difficile 630 GCF_000009205.2_ASM920v2 SAMEA1705932 PRJNA78 2017-09-29
135 Clostridium beijerinckii (DSM 791 2021)[IGV] Clostridium beijerinckii GCF_018223745.1_ASM1822374v1 SAMN18839070 PRJNA724001 2021-05-02
136 Clostridium butyricum (DSM 10702 2020)[IGV] Clostridium butyricum GCA_014131795.1_ASM1413179v1 SAMN11835364 PRJNA544389 2020-08-10
137 Clostridium saccharoperbutylacetonicum N1-4HMT (ATCC 27021 2013)[IGV] Clostridium saccharoperbutylacetonicum N1-4(HMT) GCF_000334435.1_CloSac1.0 SAMN02469458 PRJNA186901 2013-01-30
138 Clostridium tyrobutyricum (KCTC 5387 2016 KAIST)[IGV] Clostridium tyrobutyricum GCF_001642655.1_ASM164265v1 SAMN04415495 PRJNA308866 2016-05-12
139 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 DOE-JGI)[IGV] Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCF_000429805.1_ASM42980v1 SAMN02440870 PRJNA185567 2013-07-15
140 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 Nanjing Univ. of Technology)[IGV] Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCF_000359585.1_ATCC25755 SAMN02470572 PRJNA194074 2013-04-09
141 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 Univ. Cattolica del Sacro Cuore)[IGV] Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCF_000392375.2_ASM39237v2 SAMN02471386 PRJNA198486 2013-05-14
142 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2015 Tokyo Univ. Marine Science and Technology)[IGV] Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCA_000974305.1_ASM97430v1 SAMD00036756 PRJDB1432 2015-04-07
143 Companilactobacillus crustorum (MN047 2017)[IGV] Companilactobacillus crustorum GCF_001951175.1_ASM195117v1 SAMN05893358 PRJNA344515 2017-01-13
144 Corynebacterium glutamicum (ATCC 13032 2004)[IGV] Corynebacterium glutamicum ATCC 13032 GCA_000011325.1_ASM1132v1 SAMD00061105 PRJNA307 2004-02-18
145 Coxiella burnetii (RSA 493 2016)[IGV] Coxiella burnetii RSA 493 GCF_000007765.2_ASM776v2 SAMN02603970 PRJNA41 2016-11-10
146 Cupriavidus necator (H16 2019)[IGV] Cupriavidus necator H16 GCF_004798725.1_ASM479872v1 SAMN11372030 PRJNA531660 2019-04-17
147 cyanobacteria (ATCC 29133; PCC 73102 2008)[IGV] Nostoc punctiforme PCC 73102 GCF_000020025.1_ASM2002v1 SAMN02598449 PRJNA216 2008-04-24
148 cyanobacteria (PCC 7942 2005)[IGV] Synechococcus elongatus PCC 7942 = FACHB-805 GCF_000012525.1_ASM1252v1 SAMN02598254 PRJNA10645 2005-11-10
149 cyanobacteria (SAG 85.79 2020 genbank)[IGV] Limnospira fusiformis SAG 85.79 GCA_012516315.1_ASM1251631v1 SAMN14546157 PRJNA623410 2020-04-18
150 cyanobacteria (SAG 85.79 2020 refseq)[IGV] Limnospira fusiformis SAG 85.79 GCF_012516315.1_ASM1251631v1 SAMN14546157 PRJNA623410 2020-04-18
151 Desulfovibrio desulfuricans (DSM 642 2013)[IGV] Desulfovibrio desulfuricans DSM 642 GCA_000420465.1_ASM42046v1 SAMN02440572 PRJNA185532 2013-07-09
152 Desulfovibrio vulgaris str. (Hildenborough 2004)[IGV] Nitratidesulfovibrio vulgaris str. Hildenborough GCA_000195755.1_ASM19575v1 SAMN02603973 PRJNA51 2004-04-21
153 Dinoroseobacter shibae DSM 16493 (DFL 12 2007)[IGV] Dinoroseobacter shibae DFL 12 = DSM 16493 GCF_000018145.1_ASM1814v1 SAMN02598387 PRJNA17417 2007-10-05
154 E. coli (B C2566 2016)[IGV] Escherichia coli B GCF_001559615.2_ASM155961v2 SAMN04435507 PRJNA309539 2016-06-15
155 E. coli (B C3029 2016)[IGV] Escherichia coli B GCF_001559635.1_ASM155963v1 SAMN04435508 PRJNA309540 2016-02-11
156 E. coli (BE104 2019)[IGV] Escherichia coli GCF_005890115.1_ASM589011v1 SAMN11841626 PRJNA544505 2019-05-30
157 E. coli (BL21(DE3) 2010)[IGV] Escherichia coli BL21(DE3) GCA_000022665.2_ASM2266v1 SAMN02603478 PRJNA20713 2010-05-17
158 E. coli (K-12 BW25113 2014 refseq)[IGV] Escherichia coli BW25113 GCF_000750555.1_ASM75055v1 SAMN03013572 PRJNA257976 2014-09-09
159 E. coli (K-12 C3026 2016)[IGV] Escherichia coli K-12 GCF_001559675.1_ASM155967v1 SAMN04435499 PRJNA309537 2016-02-11
160 E. coli (K-12 DHB4 2016)[IGV] Escherichia coli K-12 GCF_001559655.1_ASM155965v1 SAMN04435497 PRJNA309536 2016-02-11
161 E. coli (K-12 MG1655 2013 refseq)[IGV] Escherichia coli str. K-12 substr. MG1655 GCF_000005845.2_ASM584v2 SAMN02604091 PRJNA225 2013-11-03
162 E. coli (Nissle 1917 2014)[IGV] Escherichia coli Nissle 1917 GCA_000714595.1_ASM71459v1 SAMN02794012 PRJNA248167 2014-06-27
163 E. coli (Sakai substr. RIMD 0509952 2018)[IGV] Escherichia coli O157:H7 str. Sakai GCF_000008865.2_ASM886v2 SAMN01911278 PRJNA226 2018-06-08
164 Ehrlichia canis str. (Jake 2005)[IGV] Ehrlichia canis str. Jake GCF_000012565.1_ASM1256v1 SAMN02598261 PRJNA10694 2005-08-22
165 Ehrlichia chaffeensis str. (Arkansas 2006)[IGV] Ehrlichia chaffeensis str. Arkansas GCF_000013145.1_ASM1314v1 SAMN02604010 PRJNA325 2006-02-22
166 Ehrlichia japonica (HF 2014)[IGV] Ehrlichia japonica GCF_000632845.1_ASM63284v1 SAMN02367296 PRJNA187357 2014-04-17
167 Ehrlichia minasensis (B11 2019)[IGV] Ehrlichia minasensis GCF_004181775.1_ASM418177v1 SAMN09519635 PRJNA478569 2019-02-12
168 Ehrlichia muris (AS145 2013)[IGV] Ehrlichia muris AS145 GCF_000508225.1_ASM50822v1 SAMN02641637 PRJNA228704 2013-12-16
169 Francisella tularensis subsp. novicida (D9876 2015)[IGV] Francisella tularensis subsp. novicida D9876 GCF_000833355.1_ASM83335v1 SAMN03092276 PRJNA235892 2015-02-06
170 Gluconacetobacter diazotrophicus PA1 5 (PAl 5; ATCC 49037 2008)[IGV] Gluconacetobacter diazotrophicus PA1 5 GCF_000021325.1_ASM2132v1 SAMN02598444 PRJNA21071 2008-10-16
171 Grimontia hollisae (FDAARGOS_111 2018)[IGV] Grimontia hollisae GCF_001558255.2_ASM155825v2 SAMN03996327 PRJNA231221 2018-01-31
172 Halomonas elongata (SEK2 2024)[IGV] Halomonas elongata GCA_036257755.1_ASM3625775v1 SAMN39296782 PRJNA1062380 2024-01-27
173 heartwater rickettsia (Welgevonden 2005)[IGV] Ehrlichia ruminantium str. Welgevonden GCF_000026005.1_ASM2600v1 SAMEA1705918 PRJNA9614 2005-01-05
174 Heyndrickxia coagulans DSM 1 (ATCC 7050 2015)[IGV] Heyndrickxia coagulans DSM 1 = ATCC 7050 GCF_000832905.1_ASM83290v1 SAMN03120846 PRJNA238056 2015-02-05
175 inopinata (141012304 Brucella sp. 2016)[IGV] Brucella inopinata GCF_900095155.1_BR141012304v1 SAMEA4378174 PRJEB15074 2016-10-13
176 Janthinobacterium (BJB1 2017)[IGV] Janthinobacterium sp. BJB1 GCA_002735775.2_ASM273577v2 SAMN02839584 PRJNA251750 2017-11-16
177 Janthinobacterium (BJB312 2017)[IGV] Janthinobacterium sp. BJB312 GCA_002735715.1_ASM273571v1 SAMN03098205 PRJNA251750 2017-10-28
178 Klebsiella aerogenes (KCTC 2190 2011)[IGV] Klebsiella aerogenes KCTC 2190 GCA_000215745.1_ASM21574v1 SAMN02603581 PRJNA66537 2011-06-03
179 Klebsiella pneumoniae (ATCC BAA-2146 2016)[IGV] Klebsiella pneumoniae GCA_000364385.3_ASM36438v3 SAMN02152539 PRJNA183901 2016-01-04
180 Lacticaseibacillus paracasei (LC2W 2011)[IGV] Lacticaseibacillus paracasei GCA_000194785.1_ASM19478v1 SAMN02603877 PRJNA64433 2011-04-01
181 Lactobacillus kefiranofaciens (1207 2020)[IGV] Lactobacillus kefiranofaciens GCF_014656585.1_ASM1465658v1 SAMN16072876 PRJNA662006 2020-09-19
182 Lactobacillus kefiranofaciens (ASM131133v1 JCM 8572 JSM 10550 2015)[IGV] Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 GCA_001311335.1_ASM131133v1 SAMD00000473 PRJDB772 2015-10-01
183 Lactobacillus kefiranofaciens (ASM143419v1 JCM 8572 DSM 10550 2015)[IGV] Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 GCA_001434195.1_ASM143419v1 SAMN02369454 PRJNA222257 2015-11-06
184 Lactobacillus kefiranofaciens (ATCC 43761 2016)[IGV] Lactobacillus kefiranofaciens GCA_900103655.1_IMG-taxon_2597490363_annotated_assembly SAMN02983011 PRJEB16188 2016-10-21
185 Lactobacillus kefiranofaciens (JCM 6985 DSM 5016 2014)[IGV] Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM 6985 GCA_000615685.1_ASM61568v1 SAMD00008926 PRJDB645 2014-03-31
186 Lactobacillus kefiranofaciens (JCM 6985 DSM 5016 2015)[IGV] Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM 6985 GCA_001435275.1_ASM143527v1 SAMN02369453 PRJNA222257 2015-11-06
187 Lactobacillus kefiranofaciens (KR 2017)[IGV] Lactobacillus kefiranofaciens GCA_002276565.1_ASM227656v1 SAMN06718494 PRJNA375758 2017-08-29
188 Lactobacillus kefiranofaciens (LKK75 2019)[IGV] Lactobacillus kefiranofaciens subsp. kefiranofaciens GCA_009184665.1_ASM918466v1 SAMN12792932 PRJNA566025 2019-10-20
189 Lactobacillus kefiranofaciens (ZW3 2011)[IGV] Lactobacillus kefiranofaciens subsp. kefiranofaciens GCA_000214785.1_ASM21478v1 SAMN02603965 PRJNA66525 2011-05-25
190 Lactococcus lactis (IL1403 2018)[IGV] Lactococcus lactis GCA_003722275.1_ASM372227v1 SAMN10387363 PRJNA503975 2018-11-13
191 Legionella pneumophila (Leg01/16 2013 genbank)[IGV] Legionella pneumophila Leg01/16 GCA_000468235.1_Legionella_pneumophila_Leg01_16 SAMN02264578 PRJNA213257 2013-09-17
192 Legionella pneumophila (Leg01/16 2013 refseq)[IGV] Legionella pneumophila Leg01/16 GCF_000468235.1_Legionella_pneumophila_Leg01_16 SAMN02264578 PRJNA213257 2013-09-17
193 Legionella pneumophila (Lpm7613 Lpm7613 2016)[IGV] Legionella pneumophila GCF_900092465.1_Lpm7613_v1 SAMEA4067783 PRJEB13594 2016-07-09
194 Leptospira sp. patho 1 (ATI7-C-A5 2023)[IGV] Leptospira ellisii GCF_002811955.2_ASM281195v2 SAMN07411411 PRJNA395546 2023-10-25
195 Leuconostoc citreum (KM20 2008)[IGV] Leuconostoc citreum KM20 GCA_000026405.1_ASM2640v1 SAMN02603482 PRJNA16062 2008-03-12
196 Limosilactobacillus fermentum AGR1485[IGV] Limosilactobacillus fermentum GCF_011032765.1_ASM1103276v1 SAMN13241836 PRJNA588334 2020-02-27
197 Limosilactobacillus fermentum AGR1487[IGV] Limosilactobacillus fermentum GCF_011032745.1_ASM1103274v1 SAMN13639333 PRJNA596816 2020-02-27
198 Limosilactobacillus fermentum SRCM 103290[IGV] Limosilactobacillus fermentum GCF_004063635.1_ASM406363v1 SAMN10738354 PRJNA514937 2019-01-20
199 Limosilactobacillus fermentum YL-11[IGV] Limosilactobacillus fermentum GCF_003860425.1_ASM386042v1 SAMN10484493 PRJNA507070 2018-12-04
200 Listeria innocua (ATCC 33091 2012)[IGV] Listeria innocua ATCC 33091 GCF_000241405.1_ASM24140v1 SAMN02299452 PRJNA65129 2012-01-06
201 Listeria monocytogenes (EGD-e 2003)[IGV] Listeria monocytogenes EGD-e GCF_000196035.1_ASM19603v1 SAMEA3138329 PRJNA276 2003-05-06
202 Listeria monocytogenes (LM07-00948 2016)[IGV] Listeria monocytogenes GCF_001564855.1_LM07-00948_assembly SAMEA3540852 PRJEB10750 2016-01-29
203 Lyme disease spirochete (Bol26 2009)[IGV] Borreliella burgdorferi Bol26 GCF_000181575.2_ASM18157v2 SAMN02436166 PRJNA19837 2009-04-01
204 Lysinibacillus sphaericus (C3-41 2008)[IGV] Lysinibacillus sphaericus C3-41 GCA_000017965.1_ASM1796v1 SAMN02604328 PRJNA19619 2008-02-27
205 Methylococcus capsulatus str. (Bath 2005)[IGV] Methylococcus capsulatus str. Bath GCF_000008325.1_ASM832v1 SAMN02603968 PRJNA21 2005-10-05
206 Methylorubrum extorquens (CM4 2008)[IGV] Methylorubrum extorquens CM4 GCA_000021845.1_ASM2184v1 SAMN00000037 PRJNA19527 2008-12-19
207 Mycobacterium avium (hominissuis A5 2014)[IGV] Mycobacterium avium subsp. hominissuis A5 GCF_000696715.1_Maq_reference_guided_assembly SAMN02756836 PRJNA88487 2014-06-02
208 Mycobacterium palustre (DSM 44572 2017)[IGV] Mycobacterium palustre GCF_002101785.1_ASM210178v1 SAMN04216940 PRJNA299467 2017-04-20
209 Mycobacterium sp. (VKM Ac-1817D 2014)[IGV] Mycobacterium sp. VKM Ac-1817D GCA_000416365.2_ASM41636v2 SAMN02469803 PRJNA183985 2014-11-25
210 Mycobacterium tuberculosis (ASM19595v2 H37Rv 2013)[IGV] Mycobacterium tuberculosis H37Rv GCF_000195955.2_ASM19595v2 SAMEA3138326 PRJNA224 2013-02-01
211 Mycobacterium tuberculosis (ASM27773v2 H37Rv 2013)[IGV] Mycobacterium tuberculosis H37Rv GCA_000277735.2_ASM27773v2 SAMN03081436 PRJNA37301 2013-11-26
212 Mycobacterium tuberculosis (GReAT_CRyPTIC_Unmapped_H37Rv 2023)[IGV] Mycobacterium tuberculosis GCF_963525475.1_MtbRf SAMEA114443862 PRJEB66375 2023-09-30
213 Mycobacterium tuberculosis (H37Rv 2013)[IGV] Mycobacterium tuberculosis H37Rv GCF_000277735.2_ASM27773v2 SAMN03081436 PRJNA37301 2013-11-26
214 Mycobacterium tuberculosis (MTb-Oman-3215873 2023)[IGV] Mycobacterium tuberculosis GCF_030566675.1_ASM3056667v1 SAMN36419410 PRJNA994284 2023-08-01
215 Mycoplasmoides pneumoniae (M129-B7 2015)[IGV] Mycoplasmoides pneumoniae M129-B7 GCF_000331085.3_ASM33108v2 SAMN02604130 PRJNA176548 2015-03-03
216 Neisseria meningitidis (Z2491 2003)[IGV] Neisseria meningitidis Z2491 GCA_000009105.1_ASM910v1 SAMEA1705949 PRJNA252 2003-05-06
217 Neorickettsia sennetsu str. (Miyayama 2006)[IGV] Neorickettsia sennetsu str. Miyayama GCF_000013165.1_ASM1316v1 SAMN02604016 PRJNA357 2006-02-22
218 Nitratireductor (SY7 2020)[IGV] Nitratireductor mangrovi GCA_007922615.2_ASM792261v2 SAMN12400551 PRJNA557672 2020-04-03
219 Nitrosomonas europaea (ATCC 19718 2003)[IGV] Nitrosomonas europaea ATCC 19718 GCA_000009145.1_ASM914v1 SAMEA3138193 PRJNA52 2003-05-06
220 Paenibacillus larvae subsp. larvae (Eric_IV 2018)[IGV] Paenibacillus larvae subsp. larvae GCF_002951935.1_ASM295193v1 SAMN06286564 PRJNA369466 2018-02-20
221 Pectobacterium brasiliense (1692 2020)[IGV] Pectobacterium brasiliense GCA_009873295.1_ASM987329v1 SAMN13779957 PRJNA599934 2020-01-14
222 Photobacterium damselae subsp. damselae (WMD-P2 2024)[IGV] Photobacterium damselae subsp. damselae GCF_038086725.1_ASM3808672v1 SAMN40232839 PRJNA1083106 2024-04-15
223 Pimelobacter simplex (VKM Ac-2033D 2014)[IGV] Pimelobacter simplex GCF_000785495.1_ASM78549v1 SAMN03009415 PRJNA259593 2014-11-19
224 Plasmodium malariae (2016)[IGV] Plasmodium malariae GCF_900090045.1_PmUG01 SAMEA3923181 PRJEB14392 2016-12-13
225 Pseudomonas aeruginosa (PAO1 2006)[IGV] Pseudomonas aeruginosa PAO1 GCF_000006765.1_ASM676v1 n/a PRJNA331 2006-07-24
226 Pseudomonas fluorescens (SBW25 2009)[IGV] Pseudomonas fluorescens SBW25 GCF_000009225.2_ASM922v1 SAMEA2272316 PRJEA31229 2009-05-01
227 Rhizobium ruizarguesonis (TP53 2024)[IGV] Rhizobium ruizarguesonis GCA_035921845.1_ASM3592184v1 SAMN38699756 PRJNA1049504 2024-01-22
228 Rhodobacter capsulatus (SB 1003 2010)[IGV] Rhodobacter capsulatus SB 1003 GCF_000021865.1_ASM2186v1 SAMN02604080 PRJNA55 2010-04-09
229 Rhodococcus erythropolis (CCM2595 2013)[IGV] Rhodococcus erythropolis CCM2595 GCA_000454045.1_ASM45404v1 SAMN02603403 PRJNA81583 2013-08-22
230 Rhodococcus qingshengii (IGTS8 2019)[IGV] Rhodococcus qingshengii GCF_006384225.1_ASM638422v1 SAMN08999687 PRJNA454195 2019-06-20
231 Rickettsia akari str. (Hartford 2007)[IGV] Rickettsia akari str. Hartford GCF_000018205.1_ASM1820v1 SAMN02604084 PRJNA12953 2007-10-02
232 Rickettsia asembonensis (NMRCii 2016)[IGV] Rickettsia asembonensis GCF_000828125.2_ASM82812v2 SAMN03272870 PRJNA271102 2016-03-25
233 Rickettsia asiatica (Maytaro1284 2019)[IGV] Rickettsia asiatica GCF_007989425.1_ASM798942v1 SAMD00165215 PRJDB8064 2019-07-19
234 Rickettsia australis str. (Cutlack 2012)[IGV] Rickettsia australis str. Cutlack GCF_000284155.1_ASM28415v1 SAMN02603558 PRJNA75037 2012-03-01
235 Rickettsia bellii (RML369-C 2006)[IGV] Rickettsia bellii RML369-C GCF_000012385.1_ASM1238v1 SAMN02603144 PRJNA13996 2006-04-07
236 Rickettsia canadensis str. (CA410 2012)[IGV] Rickettsia canadensis str. CA410 GCF_000283915.1_ASM28391v1 SAMN02603555 PRJNA75029 2012-02-17
237 Rickettsia conorii str. (Malish 7 2001)[IGV] Rickettsia conorii str. Malish 7 GCF_000007025.1_ASM702v1 SAMN02603141 PRJNA42 2001-10-03
238 Rickettsia endosymbiont of Aspidapion aeneum (54715 2024)[IGV] Rickettsia endosymbiont of Aspidapion aeneum GCF_964030775.1_icAspAene1.Rickettsia_sp_1.1 SAMEA114449998 PRJEB75071 2024-04-25
239 Rickettsia endosymbiont of Cantharis rufa (54716 2024)[IGV] Rickettsia endosymbiont of Cantharis rufa GCF_964026445.1_icCanRufa1.Rickettsia_sp_1.1 SAMEA114449999 PRJEB74796 2024-04-20
240 Rickettsia endosymbiont of Cardiosporidium cionae (ESH_2018B 2020)[IGV] Rickettsia endosymbiont of Cardiosporidium cionae GCF_015476335.1_ASM1547633v1 SAMN16288708 PRJNA664590 2020-11-15
241 Rickettsia endosymbiont of Ceutorhynchus obstrictus (54717 2024)[IGV] Rickettsia endosymbiont of Ceutorhynchus obstrictus GCF_964026565.1_icCeuObst1.Rickettsia_sp_1.1 SAMEA114450000 PRJEB74787 2024-04-20
242 Rickettsia endosymbiont of Culicoides newsteadi (RiCNE 2017)[IGV] Rickettsia endosymbiont of Culicoides newsteadi GCF_002259525.1_ASM225952v1 SAMN06349452 PRJNA376033 2017-08-18
243 Rickettsia endosymbiont of Gonocerus acuteangulatus (54736 2024)[IGV] Rickettsia endosymbiont of Gonocerus acuteangulatus GCF_964026435.1_ihGonAcut1.Rickettsia_sp_1.1 SAMEA114450241 PRJEB74784 2024-04-20
244 Rickettsia endosymbiont of Halotydeus destructor (MaVIC_2019 2025)[IGV] Rickettsia endosymbiont of Halotydeus destructor GCF_049278075.1_ASM4927807v1 SAMN31842651 PRJNA904412 2025-04-04
245 Rickettsia endosymbiont of Lasioglossum villosulum (54739 2024)[IGV] Rickettsia endosymbiont of Lasioglossum villosulum GCF_964026455.1_iyLasVill1.Rickettsia_sp_1.1 SAMEA114450244 PRJEB74790 2024-04-20
246 Rickettsia endosymbiont of Nabis limbatus (54738 2025)[IGV] Rickettsia endosymbiont of Nabis limbatus GCF_965196655.1_ihNabLimb1.Rickettsia_sp_1.1 SAMEA114450243 PRJEB86573 2025-03-12
247 Rickettsia endosymbiont of Oedothorax gibbosus (Oegibbosus-W744x776 2022)[IGV] Rickettsia endosymbiont of Oedothorax gibbosus GCF_936269705.1_RiOegib_v1.0 SAMEA13846915 PRJEB52003 2022-05-24
248 Rickettsia endosymbiont of Orchestes rusci (54718 2024)[IGV] Rickettsia endosymbiont of Orchestes rusci GCF_964030945.1_icOrcRusc1.Rickettsia_sp_1.1 SAMEA114450001 PRJEB75115 2024-04-21
249 Rickettsia endosymbiont of Pantilius tunicatus (54737 2024)[IGV] Rickettsia endosymbiont of Pantilius tunicatus GCF_964291875.1_ihPanTuni1.Rickettsia_sp_1.1 SAMEA114450242 PRJEB81572 2024-10-31
250 Rickettsia endosymbiont of Polydrusus tereticollis (54719 2024)[IGV] Rickettsia endosymbiont of Polydrusus tereticollis GCF_964026385.1_icPolTere1.Rickettsia_sp_1.1 SAMEA114450002 PRJEB74781 2024-04-20
251 Rickettsia endosymbiont of Rhinocyllus conicus (54720 2024)[IGV] Rickettsia endosymbiont of Rhinocyllus conicus GCF_964026465.1_icRhiConi1.Rickettsia_sp_1.1 SAMEA114450003 PRJEB74788 2024-04-20
252 Rickettsia endosymbiont of Seladonia tumulorum (54740 2024)[IGV] Rickettsia endosymbiont of Seladonia tumulorum GCF_964030815.1_iySelTumu1.Rickettsia_sp_1.1 SAMEA114450245 PRJEB75137 2024-04-25
253 Rickettsia endosymbiont of Urophora cardui (54735 2024)[IGV] Rickettsia endosymbiont of Urophora cardui GCF_964030725.1_idUroCard1.Rickettsia_sp_1.1 SAMEA114450240 PRJEB75072 2024-04-20
254 Rickettsia felis (LSU-Lb 2014)[IGV] Rickettsia felis GCF_000804505.1_ASM80450v1 SAMN02989771 PRJNA258188 2014-12-18
255 Rickettsia fournieri (AUS118 2018)[IGV] Rickettsia fournieri GCF_900243065.1_PRJEB23962 SAMEA104430940 PRJEB23962 2018-01-27
256 Rickettsia gravesii (BWI-1 2013)[IGV] Rickettsia gravesii BWI-1 GCF_000485845.1_RicGra1.0 SAMN02472051 PRJNA218069 2013-10-29
257 Rickettsia helvetica (OB144 2024)[IGV] Rickettsia helvetica GCF_963970025.1_OB144_Rh SAMEA115345701 PRJEB70514 2024-07-12
258 Rickettsia honei (RB 2012)[IGV] Rickettsia honei RB GCF_000263055.1_Rho1.0 SAMN02469768 PRJNA158665 2012-05-16
259 Rickettsia hoogstraalii (Croatica 2014)[IGV] Rickettsia hoogstraalii GCF_000825685.1_Rickettsia_hoogstraalii_Croatica SAMEA2771239 PRJEB7296 2014-09-23
260 Rickettsia japonica (YH 2011)[IGV] Rickettsia japonica YH GCF_000283595.1_ASM28359v1 SAMD00060967 PRJDA38487 2011-09-30
261 Rickettsia koreansis (CNH17-7 2025)[IGV] Rickettsia koreansis GCF_046532895.1_ASM4653289v1 SAMN13046018 PRJNA578010 2025-01-07
262 Rickettsia monacensis (IrR/Munich 2015)[IGV] Rickettsia monacensis GCF_000499665.2_RMONA_1 SAMEA4532341 PRJEB4369 2015-01-22
263 Rickettsia prowazekii str. (Chernikova 2012)[IGV] Rickettsia prowazekii str. Chernikova GCF_000277165.1_ASM27716v1 SAMN02603542 PRJNA74999 2012-03-21
264 Rickettsia rhipicephali str. (3-7-female6-CWPP 2012)[IGV] Rickettsia rhipicephali str. 3-7-female6-CWPP GCF_000284075.1_ASM28407v1 SAMN02603560 PRJNA75041 2012-03-01
265 Rickettsia rickettsii str. 'Sheila Smith' (Sheila Smith 2007)[IGV] Rickettsia rickettsii str. 'Sheila Smith' GCF_000018225.1_ASM1822v1 SAMN02603386 PRJNA9636 2007-10-02
266 Rickettsia sibirica (246 2003)[IGV] Rickettsia sibirica 246 GCF_000166935.1_ASM16693v1 SAMN02393728 PRJNA1414 2003-02-06
267 Rickettsia slovaca (13-B 2011)[IGV] Rickettsia slovaca 13-B GCF_000237845.1_ASM23784v1 SAMN02603145 PRJNA15712 2011-12-13
268 Rickettsia tamurae (AT-1 2014)[IGV] Rickettsia tamurae GCF_000751075.1_Rickettsia_tamurae_AT-1 SAMEA2658108 PRJEB6744 2014-08-06
269 Rickettsia tillamookensis (Tillamook 23 2022)[IGV] Rickettsia tillamookensis GCF_016743795.2_ASM1674379v2 SAMN15767941 PRJNA656185 2022-11-21
270 Rickettsia typhi str. (Wilmington 2004)[IGV] Rickettsia typhi str. Wilmington GCF_000008045.1_ASM804v1 SAMN02603327 PRJNA10679 2004-08-20
271 Salmonella bongori (NCTC 12419 2011)[IGV] Salmonella bongori NCTC 12419 GCF_000252995.1_ASM25299v1 SAMEA3138409 PRJNA351 2011-07-06
272 Salmonella enterica (Typhimurium LT2 2016)[IGV] Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GCF_000006945.2_ASM694v2 SAMN02604315 PRJNA241 2016-01-13
273 Salmonella enterica subsp. enterica serovar Typhimurium str. (14028S 2009)[IGV] Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GCA_000022165.1_ASM2216v1 SAMN02604137 PRJNA33067 2009-11-13
274 Shewanella oneidensis (MR-1 2012)[IGV] Shewanella oneidensis MR-1 GCF_000146165.2_ASM14616v2 SAMN02604014 PRJNA335 2012-11-02
275 Shigella boydii (ESBL-W3-2 2017)[IGV] Shigella boydii GCF_002290485.1_ASM229048v1 SAMN07203024 PRJNA389557 2017-09-12
276 Shigella dysenteriae (SWHEFF_49 2022)[IGV] Shigella dysenteriae GCF_022354085.1_ASM2235408v1 SAMN13925583 PRJNA603241 2022-02-22
277 Shigella flexneri 2a str. (301 2011)[IGV] Shigella flexneri 2a str. 301 GCF_000006925.2_ASM692v2 SAMN02603599 PRJNA310 2011-08-03
278 Shigella flexneri 5a (M90T 2019)[IGV] Shigella flexneri 5a str. M90T GCA_004799585.1_ASM479958v1 SAMN10608416 PRJNA510559 2019-04-18
279 Shigella sonnei (ATCC 29930 2018)[IGV] Shigella sonnei GCF_002950395.1_ASM295039v1 SAMN08330284 PRJNA218110 2018-02-23
280 Sodalis glossinidius str. (morsitans 2006)[IGV] Sodalis glossinidius str. 'morsitans' GCF_000010085.1_ASM1008v1 SAMD00061079 PRJNA16309 2006-01-18
281 spirochetes (HT31 2021)[IGV] Borrelia miyamotoi GCF_019668505.1_ASM1966850v1 SAMD00264446 PRJDB10961 2021-06-26
282 spirochetes (MN14-1420 2017)[IGV] Borreliella mayonii GCF_001945665.1_ASM194566v1 SAMN04979181 PRJNA321302 2017-01-11
283 Staphylococcus aureus (JE2 2017)[IGV] Staphylococcus aureus GCA_002085525.1_ASM208552v1 SAMN06677988 PRJNA381486 2017-04-11
284 Staphylococcus epidermidis (BCM-HMP0060 2009)[IGV] Staphylococcus epidermidis BCM-HMP0060 GCF_000159575.1_ASM15957v1 SAMN00001492 PRJNA31545 2009-07-17
285 Streptococcus pneumoniae (D39V 2018)[IGV] Streptococcus pneumoniae GCF_003003495.1_ASM300349v1 SAMN04093378 PRJNA295913 2018-03-15
286 Streptomyces ambofaciens (ATCC 23877 2015)[IGV] Streptomyces ambofaciens ATCC 23877 GCF_001267885.1_ASM126788v1 SAMN03921868 PRJNA93 2015-08-17
287 Streptomyces ambofaciens (DSM 40697 2016)[IGV] Streptomyces ambofaciens GCF_001632865.1_ASM163286v1 SAMN04160834 PRJNA298666 2016-04-27
288 Streptomyces avermitilis NBRC 14893 (MA-4680 2016)[IGV] Streptomyces avermitilis MA-4680 = NBRC 14893 GCF_000009765.2_ASM976v2 SAMD00061088 PRJNA189 2016-03-24
289 Streptomyces bottropensis (ATCC 25435 2013)[IGV] Streptomyces bottropensis ATCC 25435 GCA_000383595.1_ASM38359v1 SAMN02261243 PRJNA104983 2013-04-26
290 Streptomyces curacoi (DSM 40107 2016)[IGV] Streptomyces curacoi GCF_001513975.1_ASM151397v1 SAMN04193339 PRJNA299217 2016-01-13
291 Streptomyces mobaraensis (DSM 40587 2021)[IGV] Streptomyces mobaraensis GCF_020099395.1_ASM2009939v1 SAMN21037215 PRJNA758832 2021-09-23
292 Streptomyces parvulus (2297 2016)[IGV] Streptomyces parvulus GCF_001660045.1_ASM166004v1 SAMN04924834 PRJNA320204 2016-06-08
293 Stutzerimonas degradans (XL272 2019)[IGV] Stutzerimonas degradans GCA_009740185.1_ASM974018v1 SAMN13482974 PRJNA593625 2019-12-11
294 Vibrio alginolyticus (E110 2022)[IGV] Vibrio alginolyticus GCF_023650915.1_ASM2365091v1 SAMN28690470 PRJNA842900 2022-06-06
295 Vibrio cholerae (IEC224 2012)[IGV] Vibrio cholerae IEC224 GCF_000250855.1_ASM25085v1 SAMN02603415 PRJNA81153 2012-02-29
296 Vibrio cholerae (RFB16 2019)[IGV] Vibrio cholerae GCF_008369605.1_ASM836960v1 SAMN12572458 PRJNA560225 2019-09-11
297 Vibrio cholerae O1 (AAS91 2020)[IGV] Vibrio cholerae O1 GCF_009938115.1_ASM993811v1 SAMN12136324 PRJNA550979 2020-01-28
298 Vibrio cholerae O1 biovar El Tor (C6709 2020)[IGV] Vibrio cholerae O1 biovar El Tor GCF_013085105.1_ASM1308510v1 SAMN13734988 PRJNA598947 2020-05-13
299 Vibrio cholerae O1 biovar El Tor (DRC-193A 2020)[IGV] Vibrio cholerae O1 biovar El Tor GCF_013085145.1_ASM1308514v1 SAMN13735001 PRJNA598947 2020-05-13
300 Vibrio cholerae O1 biovar El Tor (E7946 2020)[IGV] Vibrio cholerae O1 biovar El Tor GCF_013085165.1_ASM1308516v1 SAMN13734989 PRJNA598947 2020-05-13
301 Vibrio cholerae O1 biovar El Tor (FJ147 2015)[IGV] Vibrio cholerae O1 biovar El Tor GCF_000963555.1_ASM96355v1 SAMN02928187 PRJNA255708 2015-03-26
302 Vibrio cholerae O1 biovar El Tor (HC1037 2018)[IGV] Vibrio cholerae O1 biovar El Tor GCF_002946655.1_ASM294665v1 SAMN08472240 PRJNA433212 2018-02-22
303 Vibrio cholerae O1 biovar El Tor (P27459 2020)[IGV] Vibrio cholerae O1 biovar El Tor GCF_013085125.1_ASM1308512v1 SAMN13734999 PRJNA598947 2020-05-13
304 Vibrio cholerae O1 biovar El Tor str. (N16961 2019)[IGV] Vibrio cholerae O1 biovar El Tor str. N16961 GCF_900205735.1_N16961_v2 SAMEA104223503 PRJEB22249 2019-08-23
305 Vibrio cholerae O1 str. (2010EL-1786 2011)[IGV] Vibrio cholerae O1 str. 2010EL-1786 GCF_000166455.1_ASM16645v2 SAMN00765529 PRJNA59943 2011-11-10
306 Vibrio cholerae O1 str. (KW3 2015)[IGV] Vibrio cholerae O1 str. KW3 GCF_001318185.1_ASM131818v1 SAMN04191514 PRJNA215281 2015-10-16
307 Vibrio cincinnatiensis (NCTC12012 2018)[IGV] Vibrio cincinnatiensis GCF_900460255.1_34500_B01 SAMEA3121335 PRJEB6403 2018-08-01
308 Vibrio fluvialis (ATCC 33809 2018)[IGV] Vibrio fluvialis GCF_001558415.2_ASM155841v2 SAMN03996321 PRJNA231221 2018-01-29
309 Vibrio furnissii (FDAARGOS_777 2019)[IGV] Vibrio furnissii GCF_006364355.1_ASM636435v1 SAMN11056492 PRJNA231221 2019-06-19
310 Vibrio harveyi (SB1 2023)[IGV] Vibrio harveyi GCF_030060435.1_ASM3006043v1 SAMN35083898 PRJNA972608 2023-05-22
311 Vibrio injensis (M12-1144 2016)[IGV] Vibrio injensis GCF_001895205.1_ASM189520v1 SAMD00066877 PRJDB5318 2016-11-25
312 Vibrio metoecus (ZF102 2023)[IGV] Vibrio metoecus GCF_030580635.1_ASM3058063v1 SAMN36294848 PRJNA991495 2023-08-01
313 Vibrio metschnikovii (NCTC8443 2018)[IGV] Vibrio metschnikovii GCF_900460295.1_51108_A01 SAMEA4442457 PRJEB6403 2018-08-01
314 Vibrio mimicus (NCTC11435 2018)[IGV] Vibrio mimicus GCF_900460385.1_42650_F01 SAMEA3643325 PRJEB6403 2018-08-01
315 Vibrio parahaemolyticus (RIMD 2210633 substr. RIMD 2210633 2004)[IGV] Vibrio parahaemolyticus RIMD 2210633 GCF_000196095.1_ASM19609v1 SAMD00058707 PRJNA360 2004-05-11
316 Vibrio vulnificus NBRC 15645 (ATCC 27562 2017)[IGV] Vibrio vulnificus NBRC 15645 = ATCC 27562 GCF_002224265.1_ASM222426v1 SAMN04097182 PRJNA295776 2017-07-24
317 Yersinia enterocolitica subsp. palearctica (Y11 2011)[IGV] Yersinia enterocolitica subsp. palearctica Y11 GCF_000253175.1_ASM25317v1 SAMEA2271938 PRJEA60483 2011-01-20
318 Yersinia pestis (A1122 2011)[IGV] Yersinia pestis A1122 GCF_000222975.1_ASM22297v1 SAMN02603531 PRJNA67155 2011-08-05

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 261 assemblies assembly stats track stats
Mammals 680 assemblies assembly stats track stats
Birds 433 assemblies assembly stats track stats
Fishes 493 assemblies assembly stats track stats
other vertebrates 317 assemblies assembly stats track stats
Invertebrates 1177 assemblies assembly stats track stats
Plants 320 assemblies assembly stats track stats
Fungi 922 assemblies assembly stats track stats
Viruses 703 assemblies assembly stats track stats
Bacteria 318 assemblies assembly stats track stats
legacy/superseded 586 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 1303 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats
BRC - BRC Analytics - Bioinformatics Research Center 1179 assemblies assembly stats track stats