VGP - Vertebrate Genomes Project assembly hubs, assembly statistics
This assembly hub contains assemblies released
by the
Vertebrate Genomes Project. (set of trio assemblies, maternal/paternal)
Data resource links
NOTE:
Click on the column headers to sort the table by that column
The
link to genome browser will attach only that single assembly to
the genome browser.
| count |
common name
link to genome browser |
scientific name
and data download |
NCBI assembly |
sequence
count | genome size
nucleotides |
gap
count | unknown bases
(gap size sum) | masking
percent |
|---|
| 1 |
African grass rat (maternal 2020) |
Arvicanthis niloticus |
GCA_011750645.1_mArvNil1.mat |
1,610 |
2,486,141,644 |
1,526 |
27,535,453 |
37.17 |
| 2 |
African grass rat (paternal X 2020) |
Arvicanthis niloticus |
GCF_011762505.1_mArvNil1.pat.X |
1,595 |
2,496,761,438 |
1,624 |
20,289,527 |
37.17 |
| 3 |
African grass rat (paternal 2020) |
Arvicanthis niloticus |
GCA_011762545.1_mArvNil1.pat |
1,740 |
2,517,706,780 |
1,563 |
57,877,291 |
36.53 |
| 4 |
budgerigar (maternal) |
Melopsittacus undulatus |
GCA_012275265.1_bMelUnd1.mat |
930 |
1,169,393,027 |
388 |
67,787,495 |
20.82 |
| 5 |
budgerigar (paternal) |
Melopsittacus undulatus |
GCA_012275275.1_bMelUnd1.pat |
330 |
1,124,753,724 |
737 |
11,458,836 |
20.35 |
| 6 |
budgerigar (paternal Z) |
Melopsittacus undulatus |
GCF_012275295.1_bMelUnd1.mat.Z |
864 |
1,171,617,451 |
284 |
3,236,129 |
22.13 |
| 7 |
common bottlenose dolphin (paternal 2020) |
Tursiops truncatus |
GCA_011762515.1_mTurTru1.pat |
1,166 |
2,378,995,196 |
868 |
45,794,633 |
45.09 |
| 8 |
common bottlenose dolphin (maternal 2020) |
Tursiops truncatus |
GCA_011762535.1_mTurTru1.mat |
985 |
2,385,753,970 |
649 |
6,418,241 |
46.07 |
| 9 |
common bottlenose dolphin (maternal Y refseq 2020) |
Tursiops truncatus |
GCF_011762595.1_mTurTru1.mat.Y |
362 |
2,378,522,213 |
674 |
6,222,516 |
46.09 |
| 10 |
sterlet (maternal 2020) |
Acipenser ruthenus |
GCA_902713425.1_fAciRut3.1_maternal_haplotype |
245 |
1,638,742,712 |
402 |
87,383 |
39.24 |
| 11 |
sterlet (paternal 2022) |
Acipenser ruthenus |
GCA_902713435.2_fAciRut3.2_paternal_haplotype |
1,517 |
1,882,648,115 |
475 |
95,000 |
41.60 |
| 12 |
white-tufted-ear marmoset (maternal 2020) |
Callithrix jacchus |
GCA_011078405.1_mCalJac1.mat |
216 |
2,811,151,840 |
1,068 |
11,863,565 |
49.86 |
| 13 |
white-tufted-ear marmoset (v2 paternal 2021) |
Callithrix jacchus |
GCA_011100535.2_mCalJac1.2.pat |
1,217 |
2,727,469,741 |
994 |
11,472,100 |
47.03 |
| 14 |
white-tufted-ear marmoset (paternal X 2020) |
Callithrix jacchus |
GCA_011100555.1_mCalJac1.pat.X |
353 |
2,829,727,687 |
959 |
13,425,093 |
49.77 |
| 15 |
zebra finch (maternal) |
Taeniopygia guttata |
GCA_008822115.3_bTaeGut2.mat.v3 |
206 |
995,952,786 |
583 |
15,480,445 |
20.34 |
| 16 |
zebra finch (paternal) |
Taeniopygia guttata |
GCA_008822125.1_bTaeGut2pat |
202 |
1,047,569,904 |
828 |
20,734,162 |
20.05 |
| 17 |
zebra finch (paternal W) |
Taeniopygia guttata |
GCF_008822105.2_bTaeGut2.pat.W.v2 |
205 |
1,068,988,106 |
857 |
21,568,737 |
20.18 |
| TOTALS: | total assembly count 17 |
13,743 |
33,111,896,334 |
14,479 |
341,346,606 |
|
|---|
| count |
common name
link to genome browser |
scientific name
and data download |
NCBI assembly |
sequence
count | genome size
nucleotides |
gap
count | unknown bases
(gap size sum) | masking
percent |
|---|