VGP - Vertebrate Genomes Project assembly hub

This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of trio assemblies, maternal/paternal)

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statistics, track statistics <== additional information for these assemblies.

Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The class VGP link provides access to the VGP GenomeArk page for that genome.
The other links provide access to NCBI resources for these assemblies.

count	common name and view in UCSC browser[IGV browser]	scientific name and data download	NCBI assembly	BioSample	BioProject	assembly date, source link	class VGP link
1	African grass rat (maternal 2020)[IGV]	Arvicanthis niloticus	GCA_011750645.1_mArvNil1.mat	SAMN12611849	PRJNA561936	2020-03-25	mammals
2	African grass rat (paternal X 2020)[IGV]	Arvicanthis niloticus	GCF_011762505.1_mArvNil1.pat.X	SAMN12611849	PRJNA608735	2020-03-27	mammals
3	African grass rat (paternal 2020)[IGV]	Arvicanthis niloticus	GCA_011762545.1_mArvNil1.pat	SAMN12611849	PRJNA561935	2020-03-25	mammals
4	budgerigar (maternal)[IGV]	Melopsittacus undulatus	GCA_012275265.1_bMelUnd1.mat	SAMN12623090	PRJNA561964	2020-04-13	birds
5	budgerigar (paternal)[IGV]	Melopsittacus undulatus	GCA_012275275.1_bMelUnd1.pat	SAMN12623090	PRJNA561963	2020-04-13	birds
6	budgerigar (paternal Z)[IGV]	Melopsittacus undulatus	GCF_012275295.1_bMelUnd1.mat.Z	SAMN12623090	PRJNA612327	2020-04-13	birds
7	common bottlenose dolphin (paternal 2020)[IGV]	Tursiops truncatus	GCA_011762515.1_mTurTru1.pat	SAMN12326775	PRJNA561884	2020-03-25	mammals
8	common bottlenose dolphin (maternal 2020)[IGV]	Tursiops truncatus	GCA_011762535.1_mTurTru1.mat	SAMN12326775	PRJNA561885	2020-03-25	mammals
9	common bottlenose dolphin (maternal Y refseq 2020)[IGV]	Tursiops truncatus	GCF_011762595.1_mTurTru1.mat.Y	SAMN12326775	PRJNA608726	2020-03-27	mammals
10	sterlet (maternal 2020)[IGV]	Acipenser ruthenus	GCA_902713425.1_fAciRut3.1_maternal_haplotype	SAMEA5572864	PRJEB35912	2020-01-08	fish
11	sterlet (paternal 2022)[IGV]	Acipenser ruthenus	GCA_902713435.2_fAciRut3.2_paternal_haplotype	SAMEA5572864	PRJEB35913	2022-02-01	fish
12	white-tufted-ear marmoset (maternal 2020)[IGV]	Callithrix jacchus	GCA_011078405.1_mCalJac1.mat	SAMN12368443	PRJNA558086	2020-03-10	primates
13	white-tufted-ear marmoset (v2 paternal 2021)[IGV]	Callithrix jacchus	GCA_011100535.2_mCalJac1.2.pat	SAMN12368443	PRJNA558087	2021-04-28	primates
14	white-tufted-ear marmoset (paternal X 2020)[IGV]	Callithrix jacchus	GCA_011100555.1_mCalJac1.pat.X	SAMN12368443	PRJNA597600	2020-03-10	primates
15	zebra finch (maternal)[IGV]	Taeniopygia guttata	GCA_008822115.3_bTaeGut2.mat.v3	SAMN09946140	PRJNA489100	2020-02-21	birds
16	zebra finch (paternal)[IGV]	Taeniopygia guttata	GCA_008822125.1_bTaeGut2pat	SAMN09946140	PRJNA489101	2019-10-03	birds
17	zebra finch (paternal W)[IGV]	Taeniopygia guttata	GCF_008822105.2_bTaeGut2.pat.W.v2	SAMN09946140	PRJNA555095	2020-02-12	birds

Alternate sets of VGP assemblies					NCBI Refseq
Index pages:	primary assembly	alternate/haplotype	trio mat/pat	legacy/superseded	other NCBI Refseq assemblies
Assembly statistics:	primary assembly	alternate/haplotype	trio mat/pat	legacy/superseded	other NCBI Refseq assemblies
Track statistics:	primary assembly	alternate/haplotype	trio mat/pat	legacy/superseded	other NCBI Refseq assemblies