GenArk: UCSC Genome Archive

hub gateway description
primates NCBI primate genomes (49 assemblies)
mammals NCBI mammal genomes (276 assemblies)
birds NCBI bird genomes (112 assemblies)
fishes NCBI fish genomes (129 assemblies)
vertebrate NCBI other vertebrate genomes (47 assemblies)
invertebrate NCBI invertebrate genomes (396 assemblies)
fungi NCBI fungi genomes (415 assemblies)
plants NCBI plant genomes (146 assemblies)
VGP Vertebrate Genomes Project collection (233 assemblies)
globalReference Global Human Reference genomes, January 2020 (10 assemblies)
mouseStrains 16 mouse strain assembly and track hub, May 2017
legacy NCBI genomes legacy/superseded by newer versions (125 assemblies)

Please note: text file listing of 1880 NCBI/VGP genome assembly hubs

Please note, the invertebrate category contains more than just invertebrate animals. Until these clades are sorted out, with extra categories created, you will also find parasites, protozoa, and other single celled eukaryotes in the invertebrate grouping.