This directory contains the Drosophila virilis 12 July 2004 assembly 
from Agencourt Bioscience Corporation. The annotations were generated 
by UCSC and collaborators worldwide.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=droVir1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

----------------------------------------------------------------
If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/droVir1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely usable for any 
purpose. The D. virilis data have been freely provided by Agencourt
Bioscience Corporation before publication for use in the UCSC Genome 
Browser with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged in
   databases. 

2. Users are free to use the data in scientific papers analyzing particular 
   genes and regions, provided that the Agencourt is properly acknowledged. 

3. Agencourt reserves the right to publish the initial large-scale analyses 
   of the dataset, including large-scale identification of regions of 
   evolutionary conservation and large-scale genomic assembly. 

4. Any redistribution of the data should carry this notice. 


      Name                     Last modified      Size  Description
Parent Directory - chromInfo.txt.gz 2004-12-13 17:17 75K gap.txt.gz 2004-12-13 17:17 86K gcPercent.txt.gz 2004-12-13 17:18 45K genscanPep.txt.gz 2004-12-13 17:18 5.1M history.txt.gz 2004-12-13 17:18 231 rmsk.txt.gz 2004-12-13 17:18 5.2M simpleRepeat.txt.gz 2004-12-13 17:18 2.3M genscan.txt.gz 2005-01-09 04:35 871K blastDm2FB.txt.gz 2005-07-28 05:23 1.4M geneid.txt.gz 2005-09-23 04:49 1.3M gbDelete_tmp.txt.gz 2005-09-27 05:01 159K chainDm2.txt.gz 2006-01-19 06:00 10M chainDm2Link.txt.gz 2006-01-19 06:02 76M netDm2.txt.gz 2006-01-19 06:03 8.3M blastDm2FB.sql 2013-10-01 12:48 1.3K chainDm2.sql 2013-10-01 12:48 878 chainDm2Link.sql 2013-10-01 12:48 577 chromInfo.sql 2013-10-01 12:48 396 gap.sql 2013-10-01 12:48 722 gbDelete_tmp.sql 2013-10-01 12:48 326 gcPercent.sql 2013-10-01 12:48 546 geneid.sql 2013-10-01 12:48 1.0K genscan.sql 2013-10-01 12:48 748 genscanPep.sql 2013-10-01 12:48 330 history.sql 2013-10-01 12:48 537 netDm2.sql 2013-10-01 12:48 1.3K rmsk.sql 2013-10-01 12:48 1.1K simpleRepeat.sql 2013-10-01 12:48 1.1K grp.sql 2014-03-02 03:40 1.4K grp.txt.gz 2014-03-02 03:40 223 augustusGene.sql 2015-07-26 13:01 1.9K augustusGene.txt.gz 2015-07-26 13:01 737K microsat.sql 2015-08-23 15:22 1.5K microsat.txt.gz 2015-08-23 15:22 34K xenoMrna.sql 2016-02-21 14:46 2.4K xenoMrna.txt.gz 2016-02-21 14:46 134M tableDescriptions.sql 2019-07-21 03:41 1.4K tableDescriptions.txt.gz 2019-07-21 03:41 4.4K all_mrna.sql 2020-08-21 14:18 2.1K all_mrna.txt.gz 2020-08-21 14:18 7.4K mrnaOrientInfo.sql 2020-08-21 14:18 1.8K mrnaOrientInfo.txt.gz 2020-08-21 14:18 1.8K gbLoaded.sql 2020-08-21 14:38 1.6K xenoRefFlat.sql 2020-08-21 14:38 1.7K xenoRefGene.sql 2020-08-21 14:38 1.9K xenoRefSeqAli.sql 2020-08-21 14:38 2.1K xenoRefGene.txt.gz 2020-08-21 14:38 14M xenoRefFlat.txt.gz 2020-08-21 14:38 13M xenoRefSeqAli.txt.gz 2020-08-21 14:38 14M gbLoaded.txt.gz 2020-08-21 14:38 15K trackDb.sql 2021-06-10 16:52 2.1K trackDb.txt.gz 2021-06-10 16:52 11K hgFindSpec.sql 2021-06-10 16:52 1.8K hgFindSpec.txt.gz 2021-06-10 16:52 611 bigFiles.sql 2021-06-13 03:13 1.4K bigFiles.txt.gz 2021-06-13 03:13 33 tableList.sql 2021-06-13 03:13 1.6K tableList.txt.gz 2021-06-13 03:13 1.9K