This directory contains the Drosophila virilis 12 July 2004 assembly
from Agencourt Bioscience Corporation. The annotations were generated
by UCSC and collaborators worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=droVir1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/droVir1/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any
purpose. The D. virilis data have been freely provided by Agencourt
Bioscience Corporation before publication for use in the UCSC Genome
Browser with the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
databases.
2. Users are free to use the data in scientific papers analyzing particular
genes and regions, provided that the Agencourt is properly acknowledged.
3. Agencourt reserves the right to publish the initial large-scale analyses
of the dataset, including large-scale identification of regions of
evolutionary conservation and large-scale genomic assembly.
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
all_mrna.sql 2020-08-21 14:18 2.1K
all_mrna.txt.gz 2020-08-21 14:18 7.4K
augustusGene.sql 2015-07-26 13:01 1.9K
augustusGene.txt.gz 2015-07-26 13:01 737K
bigFiles.sql 2024-04-14 03:30 1.4K
bigFiles.txt.gz 2024-04-14 03:30 33
blastDm2FB.sql 2013-10-01 12:48 1.3K
blastDm2FB.txt.gz 2005-07-28 05:23 1.4M
chainDm2.sql 2013-10-01 12:48 878
chainDm2.txt.gz 2006-01-19 06:00 10M
chainDm2Link.sql 2013-10-01 12:48 577
chainDm2Link.txt.gz 2006-01-19 06:02 76M
chromInfo.sql 2013-10-01 12:48 396
chromInfo.txt.gz 2004-12-13 17:17 75K
gap.sql 2013-10-01 12:48 722
gap.txt.gz 2004-12-13 17:17 86K
gbDelete_tmp.sql 2013-10-01 12:48 326
gbDelete_tmp.txt.gz 2005-09-27 05:01 159K
gbLoaded.sql 2020-08-21 14:38 1.6K
gbLoaded.txt.gz 2020-08-21 14:38 15K
gcPercent.sql 2013-10-01 12:48 546
gcPercent.txt.gz 2004-12-13 17:18 45K
geneid.sql 2013-10-01 12:48 1.0K
geneid.txt.gz 2005-09-23 04:49 1.3M
genscan.sql 2013-10-01 12:48 748
genscan.txt.gz 2005-01-09 04:35 871K
genscanPep.sql 2013-10-01 12:48 330
genscanPep.txt.gz 2004-12-13 17:18 5.1M
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 223
hgFindSpec.sql 2023-03-28 13:48 1.8K
hgFindSpec.txt.gz 2023-03-28 13:48 660
hgFindSpec_pushedout.sql 2021-08-02 14:28 1.8K
hgFindSpec_pushedout.txt.gz 2021-08-02 14:28 621
history.sql 2013-10-01 12:48 537
history.txt.gz 2004-12-13 17:18 231
microsat.sql 2015-08-23 15:22 1.5K
microsat.txt.gz 2015-08-23 15:22 34K
mrnaOrientInfo.sql 2020-08-21 14:18 1.8K
mrnaOrientInfo.txt.gz 2020-08-21 14:18 1.8K
netDm2.sql 2013-10-01 12:48 1.3K
netDm2.txt.gz 2006-01-19 06:03 8.3M
rmsk.sql 2013-10-01 12:48 1.1K
rmsk.txt.gz 2004-12-13 17:18 5.2M
simpleRepeat.sql 2013-10-01 12:48 1.1K
simpleRepeat.txt.gz 2004-12-13 17:18 2.3M
tableDescriptions.sql 2024-04-13 02:03 1.5K
tableDescriptions.txt.gz 2024-04-13 02:03 4.4K
tableList.sql 2024-04-14 03:30 1.6K
tableList.txt.gz 2024-04-14 03:30 2.1K
trackDb.sql 2023-03-28 13:48 2.1K
trackDb.txt.gz 2023-03-28 13:48 11K
trackDb_pushedout.sql 2021-08-02 14:28 2.1K
trackDb_pushedout.txt.gz 2021-08-02 14:28 11K
xenoMrna.sql 2016-02-21 14:46 2.4K
xenoMrna.txt.gz 2016-02-21 14:46 134M
xenoRefFlat.sql 2020-08-21 14:38 1.7K
xenoRefFlat.txt.gz 2020-08-21 14:38 13M
xenoRefGene.sql 2020-08-21 14:38 2.0K
xenoRefGene.txt.gz 2020-08-21 14:38 14M
xenoRefSeqAli.sql 2020-08-21 14:38 2.1K
xenoRefSeqAli.txt.gz 2020-08-21 14:38 14M