This directory contains a dump of the UCSC genome annotation 
database for the Mar. 2005 v2.0 assembly (UCSC version ci2) 
of the C. intestinalis genome from the US DOE Joint Genome 
Institute (JGI). 

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=ci2
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/ci2/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely available for public use.

To view restrictions on the use of the v1.0 data, see the JGI data 
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
      Name                     Last modified      Size  Description
Parent Directory - crisprTargets.txt.gz 2016-10-30 06:26 59 bigFiles.txt.gz 2021-06-20 03:08 65 history.txt.gz 2005-09-09 11:44 194 grp.txt.gz 2014-03-02 03:40 223 gbDelete_tmp.sql 2013-10-01 12:48 322 history.sql 2013-10-01 12:48 533 hgFindSpec.txt.gz 2021-06-10 16:48 569 gap.sql 2013-10-01 12:48 704 gc5Base.sql 2013-10-01 12:48 888 rmsk.sql 2013-10-01 12:48 1.0K simpleRepeat.sql 2013-10-01 12:48 1.1K chromInfo.sql 2007-03-12 09:42 1.2K ensPep.sql 2011-03-14 10:15 1.3K ensemblSource.sql 2011-11-13 15:39 1.3K crisprTargets.sql 2016-10-30 06:26 1.3K ensemblToGeneName.sql 2011-11-13 15:37 1.3K ensGtp.sql 2011-11-13 15:35 1.4K bigFiles.sql 2021-06-20 03:08 1.4K grp.sql 2014-03-02 03:40 1.4K tableDescriptions.sql 2019-07-21 03:41 1.4K crisprRanges.sql 2016-10-30 06:26 1.4K microsat.sql 2015-08-23 12:49 1.5K locusName.sql 2016-10-30 06:26 1.5K tableList.sql 2021-06-20 03:08 1.6K gbLoaded.sql 2020-08-21 07:25 1.6K refFlat.sql 2020-08-21 07:18 1.7K xenoRefFlat.sql 2020-08-21 07:25 1.7K hgFindSpec.sql 2021-06-10 16:48 1.8K estOrientInfo.sql 2016-06-05 09:32 1.8K mrnaOrientInfo.sql 2020-08-21 07:02 1.8K ensGene.sql 2011-03-14 10:18 1.8K pubsBlat.sql 2012-05-07 12:56 1.9K refGene.sql 2020-08-21 07:18 1.9K xenoRefGene.sql 2020-08-21 07:25 1.9K trackDb.sql 2021-06-10 16:48 2.1K pubsBlatPsl.sql 2012-05-07 12:56 2.1K all_est.sql 2016-06-05 09:30 2.1K all_mrna.sql 2020-08-21 07:02 2.1K xenoMrna.sql 2020-08-21 07:02 2.1K intronEst.sql 2016-06-05 09:32 2.1K refSeqAli.sql 2019-07-28 04:39 2.1K xenoRefSeqAli.sql 2020-08-21 07:25 2.1K microsat.txt.gz 2015-08-23 12:49 2.1K pubsBingBlatPsl.sql 2014-01-26 09:59 2.2K pubsBingBlat.sql 2014-01-26 09:59 2.4K tableList.txt.gz 2021-06-20 03:08 2.5K tableDescriptions.txt.gz 2019-07-21 03:41 5.2K trackDb.txt.gz 2021-06-10 16:48 19K pubsBlat.txt.gz 2012-05-07 12:56 26K chromInfo.txt.gz 2005-09-09 11:38 35K pubsBingBlatPsl.txt.gz 2014-01-26 09:59 37K pubsBlatPsl.txt.gz 2012-05-07 12:56 38K ensemblSource.txt.gz 2011-11-13 15:39 64K pubsBingBlat.txt.gz 2014-01-26 09:59 67K refFlat.txt.gz 2020-08-21 07:18 86K refGene.txt.gz 2020-08-21 07:18 94K refSeqAli.txt.gz 2019-07-28 04:39 101K gbLoaded.txt.gz 2020-08-21 07:25 111K ensemblToGeneName.txt.gz 2011-11-13 15:37 121K gbDelete_tmp.txt.gz 2005-09-27 05:01 139K mrnaOrientInfo.txt.gz 2020-08-21 07:02 147K ensGtp.txt.gz 2011-11-13 15:35 188K gap.txt.gz 2005-09-09 11:42 275K crisprRanges.txt.gz 2016-10-30 06:26 367K all_mrna.txt.gz 2020-08-21 07:02 666K gc5Base.txt.gz 2005-09-09 11:44 710K simpleRepeat.txt.gz 2005-09-09 11:44 1.2M ensGene.txt.gz 2011-03-14 10:18 1.3M locusName.txt.gz 2016-10-30 06:26 1.6M ensPep.txt.gz 2011-03-14 10:15 3.6M rmsk.txt.gz 2005-09-09 11:44 4.1M xenoRefFlat.txt.gz 2020-08-21 07:25 7.8M xenoRefGene.txt.gz 2020-08-21 07:25 8.6M xenoRefSeqAli.txt.gz 2020-08-21 07:25 8.9M estOrientInfo.txt.gz 2016-06-05 09:32 11M intronEst.txt.gz 2016-06-05 09:32 27M all_est.txt.gz 2016-06-05 09:31 41M xenoMrna.txt.gz 2020-08-21 07:02 94M