This directory contains a dump of the UCSC genome annotation 
database for the Mar. 2005 v2.0 assembly (UCSC version ci2) 
of the C. intestinalis genome from the US DOE Joint Genome 
Institute (JGI). 

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=ci2
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/ci2/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely available for public use.

To view restrictions on the use of the v1.0 data, see the JGI data 
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
      Name                     Last modified      Size  Description
Parent Directory - chromInfo.txt.gz 2005-09-09 11:38 35K gap.txt.gz 2005-09-09 11:42 275K gc5Base.txt.gz 2005-09-09 11:44 710K history.txt.gz 2005-09-09 11:44 194 rmsk.txt.gz 2005-09-09 11:44 4.1M simpleRepeat.txt.gz 2005-09-09 11:44 1.2M gbDelete_tmp.txt.gz 2005-09-27 05:01 139K chromInfo.sql 2007-03-12 09:42 1.2K ensPep.sql 2011-03-14 10:15 1.3K ensPep.txt.gz 2011-03-14 10:15 3.6M ensGene.sql 2011-03-14 10:18 1.8K ensGene.txt.gz 2011-03-14 10:18 1.3M ensGtp.sql 2011-11-13 15:35 1.4K ensGtp.txt.gz 2011-11-13 15:35 188K ensemblToGeneName.sql 2011-11-13 15:37 1.3K ensemblToGeneName.txt.gz 2011-11-13 15:37 121K ensemblSource.sql 2011-11-13 15:39 1.3K ensemblSource.txt.gz 2011-11-13 15:39 64K pubsBlat.sql 2012-05-07 12:56 1.9K pubsBlat.txt.gz 2012-05-07 12:56 26K pubsBlatPsl.sql 2012-05-07 12:56 2.1K pubsBlatPsl.txt.gz 2012-05-07 12:56 38K gap.sql 2013-10-01 12:48 704 gbDelete_tmp.sql 2013-10-01 12:48 322 gc5Base.sql 2013-10-01 12:48 888 history.sql 2013-10-01 12:48 533 rmsk.sql 2013-10-01 12:48 1.0K simpleRepeat.sql 2013-10-01 12:48 1.1K pubsBingBlat.sql 2014-01-26 09:59 2.4K pubsBingBlat.txt.gz 2014-01-26 09:59 67K pubsBingBlatPsl.sql 2014-01-26 09:59 2.2K pubsBingBlatPsl.txt.gz 2014-01-26 09:59 37K grp.sql 2014-03-02 03:40 1.4K grp.txt.gz 2014-03-02 03:40 223 microsat.sql 2015-08-23 12:49 1.5K microsat.txt.gz 2015-08-23 12:49 2.1K all_est.sql 2016-06-05 09:30 2.1K all_est.txt.gz 2016-06-05 09:31 41M estOrientInfo.sql 2016-06-05 09:32 1.8K estOrientInfo.txt.gz 2016-06-05 09:32 11M intronEst.sql 2016-06-05 09:32 2.1K intronEst.txt.gz 2016-06-05 09:32 27M crisprRanges.sql 2016-10-30 06:26 1.4K crisprRanges.txt.gz 2016-10-30 06:26 367K crisprTargets.sql 2016-10-30 06:26 1.3K crisprTargets.txt.gz 2016-10-30 06:26 59 locusName.sql 2016-10-30 06:26 1.5K locusName.txt.gz 2016-10-30 06:26 1.6M tableDescriptions.sql 2019-07-21 03:41 1.4K tableDescriptions.txt.gz 2019-07-21 03:41 5.2K refSeqAli.sql 2019-07-28 04:39 2.1K refSeqAli.txt.gz 2019-07-28 04:39 101K all_mrna.sql 2020-08-21 07:02 2.1K all_mrna.txt.gz 2020-08-21 07:02 666K xenoMrna.sql 2020-08-21 07:02 2.1K xenoMrna.txt.gz 2020-08-21 07:02 94M mrnaOrientInfo.sql 2020-08-21 07:02 1.8K mrnaOrientInfo.txt.gz 2020-08-21 07:02 147K refGene.sql 2020-08-21 07:18 1.9K refGene.txt.gz 2020-08-21 07:18 94K refFlat.sql 2020-08-21 07:18 1.7K refFlat.txt.gz 2020-08-21 07:18 86K gbLoaded.sql 2020-08-21 07:25 1.6K xenoRefFlat.sql 2020-08-21 07:25 1.7K xenoRefGene.sql 2020-08-21 07:25 1.9K xenoRefSeqAli.sql 2020-08-21 07:25 2.1K xenoRefGene.txt.gz 2020-08-21 07:25 8.6M xenoRefFlat.txt.gz 2020-08-21 07:25 7.8M xenoRefSeqAli.txt.gz 2020-08-21 07:25 8.9M gbLoaded.txt.gz 2020-08-21 07:25 111K trackDb.sql 2021-06-10 16:48 2.1K trackDb.txt.gz 2021-06-10 16:48 19K hgFindSpec.sql 2021-06-10 16:48 1.8K hgFindSpec.txt.gz 2021-06-10 16:48 569 bigFiles.sql 2021-06-20 03:08 1.4K bigFiles.txt.gz 2021-06-20 03:08 65 tableList.sql 2021-06-20 03:08 1.6K tableList.txt.gz 2021-06-20 03:08 2.5K