This directory contains a dump of the UCSC genome annotation 
database for the Mar. 2005 v2.0 assembly (UCSC version ci2) 
of the C. intestinalis genome from the US DOE Joint Genome 
Institute (JGI). 

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=ci2
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/ci2/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely available for public use.

To view restrictions on the use of the v1.0 data, see the JGI data 
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
      Name                     Last modified      Size  Description
Parent Directory - all_est.sql 2016-06-05 09:30 2.1K all_est.txt.gz 2016-06-05 09:31 41M all_mrna.sql 2020-08-21 07:02 2.1K all_mrna.txt.gz 2020-08-21 07:02 666K bigFiles.sql 2021-07-18 03:09 1.4K bigFiles.txt.gz 2021-07-18 03:09 65 chromInfo.sql 2007-03-12 09:42 1.2K chromInfo.txt.gz 2005-09-09 11:38 35K crisprRanges.sql 2016-10-30 06:26 1.4K crisprRanges.txt.gz 2016-10-30 06:26 367K crisprTargets.sql 2016-10-30 06:26 1.3K crisprTargets.txt.gz 2016-10-30 06:26 59 ensGene.sql 2011-03-14 10:18 1.8K ensGene.txt.gz 2011-03-14 10:18 1.3M ensGtp.sql 2011-11-13 15:35 1.4K ensGtp.txt.gz 2011-11-13 15:35 188K ensPep.sql 2011-03-14 10:15 1.3K ensPep.txt.gz 2011-03-14 10:15 3.6M ensemblSource.sql 2011-11-13 15:39 1.3K ensemblSource.txt.gz 2011-11-13 15:39 64K ensemblToGeneName.sql 2011-11-13 15:37 1.3K ensemblToGeneName.txt.gz 2011-11-13 15:37 121K estOrientInfo.sql 2016-06-05 09:32 1.8K estOrientInfo.txt.gz 2016-06-05 09:32 11M gap.sql 2013-10-01 12:48 704 gap.txt.gz 2005-09-09 11:42 275K gbDelete_tmp.sql 2013-10-01 12:48 322 gbDelete_tmp.txt.gz 2005-09-27 05:01 139K gbLoaded.sql 2020-08-21 07:25 1.6K gbLoaded.txt.gz 2020-08-21 07:25 111K gc5Base.sql 2013-10-01 12:48 888 gc5Base.txt.gz 2005-09-09 11:44 710K grp.sql 2014-03-02 03:40 1.4K grp.txt.gz 2014-03-02 03:40 223 hgFindSpec.sql 2021-06-10 16:48 1.8K hgFindSpec.txt.gz 2021-06-10 16:48 569 history.sql 2013-10-01 12:48 533 history.txt.gz 2005-09-09 11:44 194 intronEst.sql 2016-06-05 09:32 2.1K intronEst.txt.gz 2016-06-05 09:32 27M locusName.sql 2016-10-30 06:26 1.5K locusName.txt.gz 2016-10-30 06:26 1.6M microsat.sql 2015-08-23 12:49 1.5K microsat.txt.gz 2015-08-23 12:49 2.1K mrnaOrientInfo.sql 2020-08-21 07:02 1.8K mrnaOrientInfo.txt.gz 2020-08-21 07:02 147K pubsBingBlat.sql 2014-01-26 09:59 2.4K pubsBingBlat.txt.gz 2014-01-26 09:59 67K pubsBingBlatPsl.sql 2014-01-26 09:59 2.2K pubsBingBlatPsl.txt.gz 2014-01-26 09:59 37K pubsBlat.sql 2012-05-07 12:56 1.9K pubsBlat.txt.gz 2012-05-07 12:56 26K pubsBlatPsl.sql 2012-05-07 12:56 2.1K pubsBlatPsl.txt.gz 2012-05-07 12:56 38K refFlat.sql 2020-08-21 07:18 1.7K refFlat.txt.gz 2020-08-21 07:18 86K refGene.sql 2020-08-21 07:18 1.9K refGene.txt.gz 2020-08-21 07:18 94K refSeqAli.sql 2019-07-28 04:39 2.1K refSeqAli.txt.gz 2019-07-28 04:39 101K rmsk.sql 2013-10-01 12:48 1.0K rmsk.txt.gz 2005-09-09 11:44 4.1M simpleRepeat.sql 2013-10-01 12:48 1.1K simpleRepeat.txt.gz 2005-09-09 11:44 1.2M tableDescriptions.sql 2019-07-21 03:41 1.4K tableDescriptions.txt.gz 2019-07-21 03:41 5.2K tableList.sql 2021-07-18 03:09 1.6K tableList.txt.gz 2021-07-18 03:09 2.5K trackDb.sql 2021-06-10 16:48 2.1K trackDb.txt.gz 2021-06-10 16:48 19K xenoMrna.sql 2020-08-21 07:02 2.1K xenoMrna.txt.gz 2020-08-21 07:02 94M xenoRefFlat.sql 2020-08-21 07:25 1.7K xenoRefFlat.txt.gz 2020-08-21 07:25 7.8M xenoRefGene.sql 2020-08-21 07:25 1.9K xenoRefGene.txt.gz 2020-08-21 07:25 8.6M xenoRefSeqAli.sql 2020-08-21 07:25 2.1K xenoRefSeqAli.txt.gz 2020-08-21 07:25 8.9M