This directory contains a dump of the UCSC genome annotation database
for the Mar. 2005 cow genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (bosTau2 BCM HGSC Btau_2.0). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/bosTau2/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
chainRn4Link.txt.gz 2006-06-21 06:41 455M
chainHg18Link.txt.gz 2006-04-16 06:29 441M
chainMm8Link.txt.gz 2006-05-10 06:37 440M
rmsk.txt.gz 2005-10-05 09:11 140M
netHg18.txt.gz 2006-04-16 06:34 69M
all_est.txt.gz 2016-06-05 09:00 65M
quality.txt.gz 2005-10-05 09:08 62M
chainRn4.txt.gz 2006-06-21 06:34 57M
netMm8.txt.gz 2006-05-10 06:44 54M
chainMm8.txt.gz 2006-05-10 06:30 53M
netRn4.txt.gz 2006-06-21 06:47 52M
xenoRefSeqAli.txt.gz 2020-08-20 22:45 45M
xenoRefFlat.txt.gz 2020-08-20 22:45 37M
chainHg18.txt.gz 2006-04-16 06:25 36M
xenoRefGene.txt.gz 2020-08-20 22:45 35M
intronEst.txt.gz 2016-06-05 08:59 33M
estOrientInfo.txt.gz 2016-06-05 09:00 21M
gc5Base.txt.gz 2005-10-05 09:05 14M
gold.txt.gz 2005-10-05 09:06 11M
genscanPep.txt.gz 2005-10-05 09:05 11M
simpleRepeat.txt.gz 2005-10-05 09:14 10M
geneidPep.txt.gz 2005-10-28 05:23 7.9M
gap.txt.gz 2005-10-05 09:03 6.2M
geneid.txt.gz 2005-10-28 05:23 3.7M
genscan.txt.gz 2005-10-05 09:05 3.2M
blastHg18KG.txt.gz 2007-03-01 07:13 2.9M
sgpGene.txt.gz 2005-12-31 06:16 2.4M
augustusGene.txt.gz 2015-07-26 10:13 2.3M
cpgIslandExtUnmasked.txt.gz 2014-06-01 08:19 2.1M
cpgIslandExt.txt.gz 2005-10-05 09:03 2.0M
all_mrna.txt.gz 2020-08-20 22:23 1.8M
refSeqAli.txt.gz 2020-08-20 22:45 1.6M
refGene.txt.gz 2020-08-20 22:45 1.6M
contigOrient.txt.gz 2005-10-05 09:03 1.5M
refFlat.txt.gz 2020-08-20 22:45 1.4M
mgcFullMrna.txt.gz 2020-03-01 04:51 950K
mgcGenes.txt.gz 2020-03-01 04:51 822K
mrnaOrientInfo.txt.gz 2020-08-20 22:45 704K
chromInfo.txt.gz 2005-10-05 09:02 279K
gbLoaded.txt.gz 2020-08-20 22:45 207K
trackDb.txt.gz 2023-03-28 13:46 27K
trackDb_pushedout.txt.gz 2021-08-02 14:26 26K
tableDescriptions.txt.gz 2024-04-27 02:03 5.2K
tableList.txt.gz 2024-04-28 03:25 3.3K
xenoRefSeqAli.sql 2020-08-20 22:45 2.4K
mgcFullMrna.sql 2020-03-01 04:51 2.3K
intronEst.sql 2016-06-05 08:59 2.3K
all_est.sql 2016-06-05 09:00 2.3K
refSeqAli.sql 2020-08-20 22:45 2.3K
all_mrna.sql 2020-08-20 22:23 2.3K
refGene.sql 2020-08-20 22:45 2.2K
netRn4.sql 2006-06-21 06:46 2.2K
blastHg18KG.sql 2007-03-01 07:13 2.1K
xenoMrna.sql 2013-11-03 07:21 2.1K
trackDb_pushedout.sql 2021-08-02 14:26 2.1K
trackDb.sql 2023-03-28 13:46 2.1K
augustusGene.sql 2015-07-26 10:13 1.9K
mgcGenes.sql 2020-03-01 04:51 1.9K
mrnaOrientInfo.sql 2020-08-20 22:45 1.9K
estOrientInfo.sql 2016-06-05 08:59 1.9K
xenoRefFlat.sql 2020-08-20 22:45 1.9K
refFlat.sql 2020-08-20 22:45 1.9K
xenoRefGene.sql 2020-08-20 22:45 1.8K
hgFindSpec_pushedout.sql 2021-08-02 14:26 1.8K
hgFindSpec.sql 2023-03-28 13:46 1.8K
cpgIslandExtUnmasked.sql 2014-06-01 08:19 1.7K
gbLoaded.sql 2020-08-20 22:45 1.7K
chainRn4.sql 2006-06-21 06:33 1.6K
tableList.sql 2024-04-28 03:25 1.6K
tableDescriptions.sql 2024-04-27 02:03 1.5K
bigFiles.sql 2024-04-28 03:25 1.4K
grp.sql 2014-03-02 03:37 1.4K
chainRn4Link.sql 2006-06-21 06:34 1.4K
netHg18.sql 2013-10-01 12:48 1.3K
netMm8.sql 2013-10-01 12:48 1.3K
sgpGene.sql 2013-10-01 12:48 1.0K
geneid.sql 2013-10-01 12:48 1.0K
simpleRepeat.sql 2013-10-01 12:48 1.0K
rmsk.sql 2013-10-01 12:48 1.0K
quality.sql 2013-10-01 12:48 892
gc5Base.sql 2013-10-01 12:48 891
chainHg18.sql 2013-10-01 12:48 880
hgFindSpec.txt.gz 2023-03-28 13:46 871
hgFindSpec_pushedout.txt.gz 2021-08-02 14:26 829
chainMm8.sql 2013-10-01 12:48 812
cpgIslandExt.sql 2013-10-01 12:48 751
genscan.sql 2013-10-01 12:48 748
gold.sql 2013-10-01 12:48 711
contigOrient.sql 2013-10-01 12:48 686
gap.sql 2013-10-01 12:48 634
chainHg18Link.sql 2013-10-01 12:48 579
chainMm8Link.sql 2013-10-01 12:48 577
history.sql 2013-10-01 12:48 537
chromInfo.sql 2013-10-01 12:48 396
genscanPep.sql 2013-10-01 12:48 330
geneidPep.sql 2013-10-01 12:48 328
history.txt.gz 2005-10-05 09:06 279
grp.txt.gz 2014-03-02 03:37 223
xenoMrna.txt.gz 2013-11-03 07:21 33
bigFiles.txt.gz 2024-04-28 03:25 33