This directory contains a dump of the UCSC genome annotation database
for the Mar. 2005 cow genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (bosTau2 BCM HGSC Btau_2.0). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/bosTau2/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
chromInfo.txt.gz 2005-10-05 09:02 279K
contigOrient.txt.gz 2005-10-05 09:03 1.5M
cpgIslandExt.txt.gz 2005-10-05 09:03 2.0M
gap.txt.gz 2005-10-05 09:03 6.2M
gc5Base.txt.gz 2005-10-05 09:05 14M
genscan.txt.gz 2005-10-05 09:05 3.2M
genscanPep.txt.gz 2005-10-05 09:05 11M
gold.txt.gz 2005-10-05 09:06 11M
history.txt.gz 2005-10-05 09:06 279
quality.txt.gz 2005-10-05 09:08 62M
rmsk.txt.gz 2005-10-05 09:11 140M
simpleRepeat.txt.gz 2005-10-05 09:14 10M
geneid.txt.gz 2005-10-28 05:23 3.7M
geneidPep.txt.gz 2005-10-28 05:23 7.9M
sgpGene.txt.gz 2005-12-31 06:16 2.4M
chainHg18.txt.gz 2006-04-16 06:25 36M
chainHg18Link.txt.gz 2006-04-16 06:29 441M
netHg18.txt.gz 2006-04-16 06:34 69M
chainMm8.txt.gz 2006-05-10 06:30 53M
chainMm8Link.txt.gz 2006-05-10 06:37 440M
netMm8.txt.gz 2006-05-10 06:44 54M
chainRn4.sql 2006-06-21 06:33 1.6K
chainRn4.txt.gz 2006-06-21 06:34 57M
chainRn4Link.sql 2006-06-21 06:34 1.4K
chainRn4Link.txt.gz 2006-06-21 06:41 455M
netRn4.sql 2006-06-21 06:46 2.2K
netRn4.txt.gz 2006-06-21 06:47 52M
blastHg18KG.sql 2007-03-01 07:13 2.1K
blastHg18KG.txt.gz 2007-03-01 07:13 2.9M
quality.sql 2013-10-01 12:48 892
chainHg18.sql 2013-10-01 12:48 880
chainHg18Link.sql 2013-10-01 12:48 579
chainMm8.sql 2013-10-01 12:48 812
chainMm8Link.sql 2013-10-01 12:48 577
chromInfo.sql 2013-10-01 12:48 396
contigOrient.sql 2013-10-01 12:48 686
cpgIslandExt.sql 2013-10-01 12:48 751
gap.sql 2013-10-01 12:48 634
gc5Base.sql 2013-10-01 12:48 891
geneid.sql 2013-10-01 12:48 1.0K
geneidPep.sql 2013-10-01 12:48 328
genscan.sql 2013-10-01 12:48 748
genscanPep.sql 2013-10-01 12:48 330
gold.sql 2013-10-01 12:48 711
history.sql 2013-10-01 12:48 537
netHg18.sql 2013-10-01 12:48 1.3K
netMm8.sql 2013-10-01 12:48 1.3K
rmsk.sql 2013-10-01 12:48 1.0K
sgpGene.sql 2013-10-01 12:48 1.0K
simpleRepeat.sql 2013-10-01 12:48 1.0K
xenoMrna.sql 2013-11-03 07:21 2.1K
xenoMrna.txt.gz 2013-11-03 07:21 33
grp.sql 2014-03-02 03:37 1.4K
grp.txt.gz 2014-03-02 03:37 223
cpgIslandExtUnmasked.sql 2014-06-01 08:19 1.7K
cpgIslandExtUnmasked.txt.gz 2014-06-01 08:19 2.1M
augustusGene.sql 2015-07-26 10:13 1.9K
augustusGene.txt.gz 2015-07-26 10:13 2.3M
intronEst.sql 2016-06-05 08:59 2.3K
intronEst.txt.gz 2016-06-05 08:59 33M
estOrientInfo.sql 2016-06-05 08:59 1.9K
estOrientInfo.txt.gz 2016-06-05 09:00 21M
all_est.sql 2016-06-05 09:00 2.3K
all_est.txt.gz 2016-06-05 09:00 65M
mgcFullMrna.sql 2020-03-01 04:51 2.3K
mgcFullMrna.txt.gz 2020-03-01 04:51 950K
mgcGenes.sql 2020-03-01 04:51 1.9K
mgcGenes.txt.gz 2020-03-01 04:51 822K
all_mrna.sql 2020-08-20 22:23 2.3K
all_mrna.txt.gz 2020-08-20 22:23 1.8M
refGene.sql 2020-08-20 22:45 2.2K
refGene.txt.gz 2020-08-20 22:45 1.6M
refFlat.sql 2020-08-20 22:45 1.9K
refFlat.txt.gz 2020-08-20 22:45 1.4M
xenoRefGene.sql 2020-08-20 22:45 1.8K
xenoRefGene.txt.gz 2020-08-20 22:45 35M
xenoRefFlat.sql 2020-08-20 22:45 1.9K
xenoRefFlat.txt.gz 2020-08-20 22:45 37M
mrnaOrientInfo.sql 2020-08-20 22:45 1.9K
mrnaOrientInfo.txt.gz 2020-08-20 22:45 704K
refSeqAli.sql 2020-08-20 22:45 2.3K
refSeqAli.txt.gz 2020-08-20 22:45 1.6M
xenoRefSeqAli.sql 2020-08-20 22:45 2.4K
xenoRefSeqAli.txt.gz 2020-08-20 22:45 45M
gbLoaded.sql 2020-08-20 22:45 1.7K
gbLoaded.txt.gz 2020-08-20 22:45 207K
trackDb_pushedout.sql 2021-08-02 14:26 2.1K
trackDb_pushedout.txt.gz 2021-08-02 14:26 26K
hgFindSpec_pushedout.sql 2021-08-02 14:26 1.8K
hgFindSpec_pushedout.txt.gz 2021-08-02 14:26 829
trackDb.sql 2023-03-28 13:46 2.1K
trackDb.txt.gz 2023-03-28 13:46 27K
hgFindSpec.sql 2023-03-28 13:46 1.8K
hgFindSpec.txt.gz 2023-03-28 13:46 871
tableDescriptions.sql 2024-04-20 02:03 1.5K
tableDescriptions.txt.gz 2024-04-20 02:03 5.2K
tableList.sql 2024-04-21 03:28 1.6K
tableList.txt.gz 2024-04-21 03:28 3.3K
bigFiles.sql 2024-04-21 03:28 1.4K
bigFiles.txt.gz 2024-04-21 03:28 33