This directory contains a dump of the UCSC genome annotation database
for the Mar. 2005 cow genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (bosTau2 BCM HGSC Btau_2.0). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/bosTau2/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-04-21 03:28 33
xenoMrna.txt.gz 2013-11-03 07:21 33
grp.txt.gz 2014-03-02 03:37 223
history.txt.gz 2005-10-05 09:06 279
geneidPep.sql 2013-10-01 12:48 328
genscanPep.sql 2013-10-01 12:48 330
chromInfo.sql 2013-10-01 12:48 396
history.sql 2013-10-01 12:48 537
chainMm8Link.sql 2013-10-01 12:48 577
chainHg18Link.sql 2013-10-01 12:48 579
gap.sql 2013-10-01 12:48 634
contigOrient.sql 2013-10-01 12:48 686
gold.sql 2013-10-01 12:48 711
genscan.sql 2013-10-01 12:48 748
cpgIslandExt.sql 2013-10-01 12:48 751
chainMm8.sql 2013-10-01 12:48 812
hgFindSpec_pushedout.txt.gz 2021-08-02 14:26 829
hgFindSpec.txt.gz 2023-03-28 13:46 871
chainHg18.sql 2013-10-01 12:48 880
gc5Base.sql 2013-10-01 12:48 891
quality.sql 2013-10-01 12:48 892
rmsk.sql 2013-10-01 12:48 1.0K
simpleRepeat.sql 2013-10-01 12:48 1.0K
geneid.sql 2013-10-01 12:48 1.0K
sgpGene.sql 2013-10-01 12:48 1.0K
netMm8.sql 2013-10-01 12:48 1.3K
netHg18.sql 2013-10-01 12:48 1.3K
chainRn4Link.sql 2006-06-21 06:34 1.4K
grp.sql 2014-03-02 03:37 1.4K
bigFiles.sql 2024-04-21 03:28 1.4K
tableDescriptions.sql 2024-04-20 02:03 1.5K
tableList.sql 2024-04-21 03:28 1.6K
chainRn4.sql 2006-06-21 06:33 1.6K
gbLoaded.sql 2020-08-20 22:45 1.7K
cpgIslandExtUnmasked.sql 2014-06-01 08:19 1.7K
hgFindSpec.sql 2023-03-28 13:46 1.8K
hgFindSpec_pushedout.sql 2021-08-02 14:26 1.8K
xenoRefGene.sql 2020-08-20 22:45 1.8K
refFlat.sql 2020-08-20 22:45 1.9K
xenoRefFlat.sql 2020-08-20 22:45 1.9K
estOrientInfo.sql 2016-06-05 08:59 1.9K
mrnaOrientInfo.sql 2020-08-20 22:45 1.9K
mgcGenes.sql 2020-03-01 04:51 1.9K
augustusGene.sql 2015-07-26 10:13 1.9K
trackDb.sql 2023-03-28 13:46 2.1K
trackDb_pushedout.sql 2021-08-02 14:26 2.1K
xenoMrna.sql 2013-11-03 07:21 2.1K
blastHg18KG.sql 2007-03-01 07:13 2.1K
netRn4.sql 2006-06-21 06:46 2.2K
refGene.sql 2020-08-20 22:45 2.2K
all_mrna.sql 2020-08-20 22:23 2.3K
refSeqAli.sql 2020-08-20 22:45 2.3K
all_est.sql 2016-06-05 09:00 2.3K
intronEst.sql 2016-06-05 08:59 2.3K
mgcFullMrna.sql 2020-03-01 04:51 2.3K
xenoRefSeqAli.sql 2020-08-20 22:45 2.4K
tableList.txt.gz 2024-04-21 03:28 3.3K
tableDescriptions.txt.gz 2024-04-20 02:03 5.2K
trackDb_pushedout.txt.gz 2021-08-02 14:26 26K
trackDb.txt.gz 2023-03-28 13:46 27K
gbLoaded.txt.gz 2020-08-20 22:45 207K
chromInfo.txt.gz 2005-10-05 09:02 279K
mrnaOrientInfo.txt.gz 2020-08-20 22:45 704K
mgcGenes.txt.gz 2020-03-01 04:51 822K
mgcFullMrna.txt.gz 2020-03-01 04:51 950K
refFlat.txt.gz 2020-08-20 22:45 1.4M
contigOrient.txt.gz 2005-10-05 09:03 1.5M
refGene.txt.gz 2020-08-20 22:45 1.6M
refSeqAli.txt.gz 2020-08-20 22:45 1.6M
all_mrna.txt.gz 2020-08-20 22:23 1.8M
cpgIslandExt.txt.gz 2005-10-05 09:03 2.0M
cpgIslandExtUnmasked.txt.gz 2014-06-01 08:19 2.1M
augustusGene.txt.gz 2015-07-26 10:13 2.3M
sgpGene.txt.gz 2005-12-31 06:16 2.4M
blastHg18KG.txt.gz 2007-03-01 07:13 2.9M
genscan.txt.gz 2005-10-05 09:05 3.2M
geneid.txt.gz 2005-10-28 05:23 3.7M
gap.txt.gz 2005-10-05 09:03 6.2M
geneidPep.txt.gz 2005-10-28 05:23 7.9M
simpleRepeat.txt.gz 2005-10-05 09:14 10M
genscanPep.txt.gz 2005-10-05 09:05 11M
gold.txt.gz 2005-10-05 09:06 11M
gc5Base.txt.gz 2005-10-05 09:05 14M
estOrientInfo.txt.gz 2016-06-05 09:00 21M
intronEst.txt.gz 2016-06-05 08:59 33M
xenoRefGene.txt.gz 2020-08-20 22:45 35M
chainHg18.txt.gz 2006-04-16 06:25 36M
xenoRefFlat.txt.gz 2020-08-20 22:45 37M
xenoRefSeqAli.txt.gz 2020-08-20 22:45 45M
netRn4.txt.gz 2006-06-21 06:47 52M
chainMm8.txt.gz 2006-05-10 06:30 53M
netMm8.txt.gz 2006-05-10 06:44 54M
chainRn4.txt.gz 2006-06-21 06:34 57M
quality.txt.gz 2005-10-05 09:08 62M
all_est.txt.gz 2016-06-05 09:00 65M
netHg18.txt.gz 2006-04-16 06:34 69M
rmsk.txt.gz 2005-10-05 09:11 140M
chainMm8Link.txt.gz 2006-05-10 06:37 440M
chainHg18Link.txt.gz 2006-04-16 06:29 441M
chainRn4Link.txt.gz 2006-06-21 06:41 455M