This directory contains a dump of the UCSC genome annotation database 
for the Mar. 2005 cow genome assembled by the Baylor College of Medicine 
Human Genome Sequencing Center (bosTau2 BCM HGSC Btau_2.0). For more 
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau2
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website. 
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/bosTau2/database/. To download multiple files, use the 
"mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.

      Name                        Last modified      Size  Description
Parent Directory - all_est.sql 2016-06-05 09:00 2.3K all_est.txt.gz 2016-06-05 09:00 65M all_mrna.sql 2020-08-20 22:23 2.3K all_mrna.txt.gz 2020-08-20 22:23 1.8M augustusGene.sql 2015-07-26 10:13 1.9K augustusGene.txt.gz 2015-07-26 10:13 2.3M bigFiles.sql 2021-05-02 03:09 1.4K bigFiles.txt.gz 2021-05-02 03:09 33 blastHg18KG.sql 2007-03-01 07:13 2.1K blastHg18KG.txt.gz 2007-03-01 07:13 2.9M chainHg18.sql 2013-10-01 12:48 880 chainHg18.txt.gz 2006-04-16 06:25 36M chainHg18Link.sql 2013-10-01 12:48 579 chainHg18Link.txt.gz 2006-04-16 06:29 441M chainMm8.sql 2013-10-01 12:48 812 chainMm8.txt.gz 2006-05-10 06:30 53M chainMm8Link.sql 2013-10-01 12:48 577 chainMm8Link.txt.gz 2006-05-10 06:37 440M chainRn4.sql 2006-06-21 06:33 1.6K chainRn4.txt.gz 2006-06-21 06:34 57M chainRn4Link.sql 2006-06-21 06:34 1.4K chainRn4Link.txt.gz 2006-06-21 06:41 455M chromInfo.sql 2013-10-01 12:48 396 chromInfo.txt.gz 2005-10-05 09:02 279K contigOrient.sql 2013-10-01 12:48 686 contigOrient.txt.gz 2005-10-05 09:03 1.5M cpgIslandExt.sql 2013-10-01 12:48 751 cpgIslandExt.txt.gz 2005-10-05 09:03 2.0M cpgIslandExtUnmasked.sql 2014-06-01 08:19 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 08:19 2.1M estOrientInfo.sql 2016-06-05 08:59 1.9K estOrientInfo.txt.gz 2016-06-05 09:00 21M gap.sql 2013-10-01 12:48 634 gap.txt.gz 2005-10-05 09:03 6.2M gbLoaded.sql 2020-08-20 22:45 1.7K gbLoaded.txt.gz 2020-08-20 22:45 207K gc5Base.sql 2013-10-01 12:48 891 gc5Base.txt.gz 2005-10-05 09:05 14M geneid.sql 2013-10-01 12:48 1.0K geneid.txt.gz 2005-10-28 05:23 3.7M geneidPep.sql 2013-10-01 12:48 328 geneidPep.txt.gz 2005-10-28 05:23 7.9M genscan.sql 2013-10-01 12:48 748 genscan.txt.gz 2005-10-05 09:05 3.2M genscanPep.sql 2013-10-01 12:48 330 genscanPep.txt.gz 2005-10-05 09:05 11M gold.sql 2013-10-01 12:48 711 gold.txt.gz 2005-10-05 09:06 11M grp.sql 2014-03-02 03:37 1.4K grp.txt.gz 2014-03-02 03:37 223 hgFindSpec.sql 2020-10-25 07:40 1.7K hgFindSpec.txt.gz 2020-10-25 07:40 819 history.sql 2013-10-01 12:48 537 history.txt.gz 2005-10-05 09:06 279 intronEst.sql 2016-06-05 08:59 2.3K intronEst.txt.gz 2016-06-05 08:59 33M mgcFullMrna.sql 2020-03-01 04:51 2.3K mgcFullMrna.txt.gz 2020-03-01 04:51 950K mgcGenes.sql 2020-03-01 04:51 1.9K mgcGenes.txt.gz 2020-03-01 04:51 822K mrnaOrientInfo.sql 2020-08-20 22:45 1.9K mrnaOrientInfo.txt.gz 2020-08-20 22:45 704K netHg18.sql 2013-10-01 12:48 1.3K netHg18.txt.gz 2006-04-16 06:34 69M netMm8.sql 2013-10-01 12:48 1.3K netMm8.txt.gz 2006-05-10 06:44 54M netRn4.sql 2006-06-21 06:46 2.2K netRn4.txt.gz 2006-06-21 06:47 52M quality.sql 2013-10-01 12:48 892 quality.txt.gz 2005-10-05 09:08 62M refFlat.sql 2020-08-20 22:45 1.9K refFlat.txt.gz 2020-08-20 22:45 1.4M refGene.sql 2020-08-20 22:45 2.2K refGene.txt.gz 2020-08-20 22:45 1.6M refSeqAli.sql 2020-08-20 22:45 2.3K refSeqAli.txt.gz 2020-08-20 22:45 1.6M rmsk.sql 2013-10-01 12:48 1.0K rmsk.txt.gz 2005-10-05 09:11 140M sgpGene.sql 2013-10-01 12:48 1.0K sgpGene.txt.gz 2005-12-31 06:16 2.4M simpleRepeat.sql 2013-10-01 12:48 1.0K simpleRepeat.txt.gz 2005-10-05 09:14 10M tableDescriptions.sql 2020-03-01 04:51 1.4K tableDescriptions.txt.gz 2020-03-01 04:51 5.0K tableList.sql 2021-05-02 03:09 1.6K tableList.txt.gz 2021-05-02 03:09 3.2K trackDb.sql 2020-10-25 07:40 2.0K trackDb.txt.gz 2020-10-25 07:40 25K xenoMrna.sql 2013-11-03 07:21 2.1K xenoMrna.txt.gz 2013-11-03 07:21 33 xenoRefFlat.sql 2020-08-20 22:45 1.9K xenoRefFlat.txt.gz 2020-08-20 22:45 37M xenoRefGene.sql 2020-08-20 22:45 1.8K xenoRefGene.txt.gz 2020-08-20 22:45 35M xenoRefSeqAli.sql 2020-08-20 22:45 2.4K xenoRefSeqAli.txt.gz 2020-08-20 22:45 45M