This directory contains a dump of the UCSC genome annotation
database for the Saccharomyces cerevisiae sequence dated 1 Oct. 2003
in the Saccharomyces Genome Database (http://www.yeastgenome.org/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=sacCer1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/sacCer1/database. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
choExpDistance.txt.gz 2004-01-14 17:03 34M
chromInfo.txt.gz 2004-01-14 17:03 218
drBlastTab.txt.gz 2004-01-14 17:03 83K
gcPercent.txt.gz 2004-01-14 17:04 2.8K
multizYeast.txt.gz 2004-01-14 17:04 501K
sgdAbundance.txt.gz 2004-01-14 17:04 19K
sgdBlastTab.txt.gz 2004-01-14 17:04 1.0M
sgdCanonical.txt.gz 2004-01-14 17:04 89K
sgdClone.txt.gz 2004-01-14 17:04 16K
sgdDescription.txt.gz 2004-01-14 17:04 139K
sgdGene.txt.gz 2004-01-14 17:04 112K
sgdIsoforms.txt.gz 2004-01-14 17:04 27K
sgdLocalization.txt.gz 2004-01-14 17:04 19K
sgdOther.txt.gz 2004-01-14 17:04 24K
sgdOtherDescription.txt.gz 2004-01-14 17:04 13K
sgdPep.txt.gz 2004-01-14 17:04 1.6M
sgdToSgd.txt.gz 2004-01-14 17:04 28K
sgdToSwissProt.txt.gz 2004-01-14 17:04 32K
simpleRepeat.txt.gz 2004-01-14 17:04 33K
sgdToPfam.txt.gz 2004-04-17 05:21 22K
extFile.txt.gz 2004-09-13 06:09 1.5K
history.txt.gz 2004-09-13 06:09 584
sacBay_pwMaf.txt.gz 2004-09-13 06:09 46K
sacCas_pwMaf.txt.gz 2004-09-13 06:09 77K
sacKlu_pwMaf.txt.gz 2004-09-13 06:09 112K
sacKud_pwMaf.txt.gz 2004-09-13 06:09 63K
sacMik_pwMaf.txt.gz 2004-09-13 06:09 56K
sacPar_pwMaf.txt.gz 2004-09-13 06:09 34K
blastHg16KG.txt.gz 2004-09-28 17:12 270K
esRegGeneToModule.txt.gz 2004-09-28 17:12 9.1K
esRegGeneToMotif.txt.gz 2004-09-28 17:12 37K
esRegMotif.txt.gz 2004-09-28 17:12 17K
esRegUpstreamRegion.txt.gz 2004-09-28 17:12 19K
phastCons.txt.gz 2004-09-30 17:31 305K
phastConsElements.txt.gz 2004-09-30 17:31 380K
transRegCode.txt.gz 2004-12-22 21:39 1.4M
transRegCodeMotif.txt.gz 2004-12-22 21:39 6.3K
transRegCodeProbe.txt.gz 2004-12-22 21:39 138K
protHomolog.txt.gz 2005-01-12 09:45 3.2M
samSubdir.txt.gz 2005-01-12 09:45 14K
yeastP2P.txt.gz 2005-06-16 05:00 27M
rnBlastTab.sql 2006-07-22 13:14 1.6K
rnBlastTab.txt.gz 2006-07-22 13:14 68K
sgdToName.sql 2007-03-23 10:42 1.2K
sgdToName.txt.gz 2007-03-23 10:42 36K
mmBlastTab.sql 2007-10-20 17:54 1.6K
mmBlastTab.txt.gz 2007-10-20 17:54 58K
ensGene.sql 2008-04-19 03:11 1.9K
ensGene.txt.gz 2008-04-19 03:11 150K
ensGtp.sql 2008-04-19 03:11 1.3K
ensGtp.txt.gz 2008-04-19 03:11 29K
ensPep.sql 2008-04-19 03:11 1.1K
ensPep.txt.gz 2008-04-19 03:11 1.7M
dmBlastTab.sql 2008-11-03 03:18 1.6K
dmBlastTab.txt.gz 2008-11-03 03:18 52K
uwFootprintsMappability.sql 2009-04-26 11:34 1.3K
uwFootprintsMappability.txt.gz 2009-04-26 11:34 99K
uwFootprintsTagCounts.sql 2009-04-26 11:34 1.8K
uwFootprintsTagCounts.txt.gz 2009-04-26 11:35 34M
uwFootprintsPrints.sql 2009-04-26 11:35 1.4K
uwFootprintsPrints.txt.gz 2009-04-26 11:35 52K
hgBlastTab.sql 2009-08-19 15:45 1.8K
hgBlastTab.txt.gz 2009-08-19 15:45 59K
growthCondition.sql 2011-09-12 00:03 1.3K
growthCondition.txt.gz 2011-09-12 00:03 685
blastHg16KG.sql 2013-10-01 12:48 1.3K
choExpDistance.sql 2013-10-01 12:48 403
chromInfo.sql 2013-10-01 12:48 405
drBlastTab.sql 2013-10-01 12:48 811
esRegGeneToModule.sql 2013-10-01 12:48 381
esRegGeneToMotif.sql 2013-10-01 12:48 656
esRegMotif.sql 2013-10-01 12:48 452
esRegUpstreamRegion.sql 2013-10-01 12:48 598
extFile.sql 2013-10-01 12:48 445
gcPercent.sql 2013-10-01 12:48 555
history.sql 2013-10-01 12:48 537
multizYeast.sql 2013-10-01 12:48 671
phastCons.sql 2013-10-01 12:48 895
phastConsElements.sql 2013-10-01 12:48 655
protHomolog.sql 2013-10-01 12:48 621
sacBay_pwMaf.sql 2013-10-01 12:48 662
sacCas_pwMaf.sql 2013-10-01 12:48 662
sacKlu_pwMaf.sql 2013-10-01 12:48 662
sacKud_pwMaf.sql 2013-10-01 12:48 662
sacMik_pwMaf.sql 2013-10-01 12:48 662
sacPar_pwMaf.sql 2013-10-01 12:48 662
samSubdir.sql 2013-10-01 12:48 345
sgdAbundance.sql 2013-10-01 12:48 394
sgdBlastTab.sql 2013-10-01 12:48 813
sgdCanonical.sql 2013-10-01 12:48 616
sgdClone.sql 2013-10-01 12:48 571
sgdDescription.sql 2013-10-01 12:48 391
sgdGene.sql 2013-10-01 12:48 833
sgdIsoforms.sql 2013-10-01 12:48 409
sgdLocalization.sql 2013-10-01 12:48 387
sgdOther.sql 2013-10-01 12:48 594
sgdOtherDescription.sql 2013-10-01 12:48 401
sgdPep.sql 2013-10-01 12:48 331
sgdToPfam.sql 2013-10-01 12:48 375
sgdToSgd.sql 2013-10-01 12:48 374
sgdToSwissProt.sql 2013-10-01 12:48 379
simpleRepeat.sql 2013-10-01 12:48 1.1K
transRegCode.sql 2013-10-01 12:48 663
transRegCodeMotif.sql 2013-10-01 12:48 471
transRegCodeProbe.sql 2013-10-01 12:48 638
yeastP2P.sql 2013-10-01 12:48 359
transRegCodeCondition.sql 2013-11-10 22:13 1.5K
transRegCodeCondition.txt.gz 2013-11-10 22:13 1.2K
grp.sql 2014-03-02 04:14 1.4K
grp.txt.gz 2014-03-02 04:14 218
augustusGene.sql 2015-07-26 17:28 1.9K
augustusGene.txt.gz 2015-07-26 17:28 107K
all_est.sql 2016-05-15 11:28 2.1K
all_est.txt.gz 2016-05-15 11:28 961K
chr1_est.sql 2016-05-15 11:28 2.1K
chr1_est.txt.gz 2016-05-15 11:28 11K
chr1_intronEst.sql 2016-05-15 11:28 2.1K
chr1_intronEst.txt.gz 2016-05-15 11:28 1.1K
chr3_est.sql 2016-05-15 11:28 2.1K
chr3_est.txt.gz 2016-05-15 11:28 32K
chr3_intronEst.sql 2016-05-15 11:28 2.1K
chr3_intronEst.txt.gz 2016-05-15 11:28 1.5K
chr8_est.sql 2016-05-15 11:28 2.1K
chr8_est.txt.gz 2016-05-15 11:28 32K
chr8_intronEst.sql 2016-05-15 11:28 2.1K
chr8_intronEst.txt.gz 2016-05-15 11:28 3.6K
chr9_est.sql 2016-05-15 11:28 2.1K
chr9_est.txt.gz 2016-05-15 11:28 24K
chr9_intronEst.sql 2016-05-15 11:28 2.1K
chr9_intronEst.txt.gz 2016-05-15 11:28 2.6K
chr10_est.sql 2016-05-15 11:28 2.1K
chr10_est.txt.gz 2016-05-15 11:28 50K
chr10_intronEst.sql 2016-05-15 11:28 2.1K
chr10_intronEst.txt.gz 2016-05-15 11:28 3.2K
chr4_est.sql 2016-05-15 11:28 2.1K
chr4_est.txt.gz 2016-05-15 11:28 149K
chr4_intronEst.sql 2016-05-15 11:28 2.1K
chr4_intronEst.txt.gz 2016-05-15 11:28 12K
chr5_est.sql 2016-05-15 11:28 2.1K
chr5_est.txt.gz 2016-05-15 11:28 53K
chr5_intronEst.sql 2016-05-15 11:28 2.1K
chr5_intronEst.txt.gz 2016-05-15 11:28 3.3K
chr6_est.sql 2016-05-15 11:28 2.1K
chr6_est.txt.gz 2016-05-15 11:28 30K
chr6_intronEst.sql 2016-05-15 11:28 2.1K
chr6_intronEst.txt.gz 2016-05-15 11:28 2.9K
chr11_est.sql 2016-05-15 11:28 2.1K
chr11_est.txt.gz 2016-05-15 11:28 49K
chr11_intronEst.sql 2016-05-15 11:28 2.1K
chr11_intronEst.txt.gz 2016-05-15 11:28 3.2K
chr12_est.sql 2016-05-15 11:28 2.1K
chr12_est.txt.gz 2016-05-15 11:28 81K
chr12_intronEst.sql 2016-05-15 11:28 2.1K
chr12_intronEst.txt.gz 2016-05-15 11:28 5.7K
chr13_est.sql 2016-05-15 11:28 2.1K
chr13_est.txt.gz 2016-05-15 11:28 70K
chr13_intronEst.sql 2016-05-15 11:28 2.1K
chr13_intronEst.txt.gz 2016-05-15 11:28 5.5K
chr14_est.sql 2016-05-15 11:28 2.1K
chr14_est.txt.gz 2016-05-15 11:28 46K
chr14_intronEst.sql 2016-05-15 11:28 2.1K
chr14_intronEst.txt.gz 2016-05-15 11:28 2.4K
chr15_est.sql 2016-05-15 11:28 2.1K
chr16_est.sql 2016-05-15 11:28 2.1K
chr16_est.txt.gz 2016-05-15 11:28 84K
chr16_intronEst.sql 2016-05-15 11:28 2.1K
chr16_intronEst.txt.gz 2016-05-15 11:28 6.6K
chrM_est.sql 2016-05-15 11:28 2.1K
chrM_est.txt.gz 2016-05-15 11:28 33
chr2_est.sql 2016-05-15 11:29 2.1K
chr2_est.txt.gz 2016-05-15 11:29 71K
chr2_intronEst.sql 2016-05-15 11:29 2.1K
chr2_intronEst.txt.gz 2016-05-15 11:29 9.3K
chr7_est.sql 2016-05-15 11:29 2.1K
chr7_est.txt.gz 2016-05-15 11:29 83K
chr7_intronEst.sql 2016-05-15 11:29 2.1K
chr7_intronEst.txt.gz 2016-05-15 11:29 8.3K
chr15_est.txt.gz 2016-05-15 11:29 101K
chr15_intronEst.sql 2016-05-15 11:29 2.1K
chr15_intronEst.txt.gz 2016-05-15 11:29 5.3K
chrM_intronEst.sql 2016-05-15 11:29 2.1K
chrM_intronEst.txt.gz 2016-05-15 11:29 39
estOrientInfo.sql 2016-05-15 11:29 1.8K
estOrientInfo.txt.gz 2016-05-15 11:29 303K
oreganno.sql 2016-05-15 11:29 1.5K
oreganno.txt.gz 2016-05-15 11:29 83K
oregannoAttr.sql 2016-05-15 11:29 1.4K
oregannoAttr.txt.gz 2016-05-15 11:29 118K
oregannoLink.sql 2016-05-15 11:29 1.4K
oregannoLink.txt.gz 2016-05-15 11:29 83K
chr10_mrna.sql 2020-05-09 02:09 2.1K
chr10_mrna.txt.gz 2020-05-09 02:09 3.4K
chr11_mrna.sql 2020-05-09 02:09 2.1K
chr11_mrna.txt.gz 2020-05-09 02:09 2.5K
chr12_mrna.sql 2020-05-09 02:09 2.1K
chr12_mrna.txt.gz 2020-05-09 02:09 4.6K
chr13_mrna.sql 2020-05-09 02:09 2.1K
chr13_mrna.txt.gz 2020-05-09 02:09 3.4K
chr14_mrna.sql 2020-05-09 02:09 2.1K
chr14_mrna.txt.gz 2020-05-09 02:09 2.8K
chr15_mrna.sql 2020-05-09 02:09 2.1K
chr15_mrna.txt.gz 2020-05-09 02:09 3.2K
chr16_mrna.sql 2020-05-09 02:10 2.1K
chr16_mrna.txt.gz 2020-05-09 02:10 3.1K
chr1_mrna.sql 2020-05-09 02:10 2.1K
chr1_mrna.txt.gz 2020-05-09 02:10 1.0K
chr2_mrna.sql 2020-05-09 02:10 2.1K
chr2_mrna.txt.gz 2020-05-09 02:10 3.2K
chr3_mrna.sql 2020-05-09 02:10 2.1K
chr3_mrna.txt.gz 2020-05-09 02:10 1.1K
chr4_mrna.sql 2020-05-09 02:10 2.1K
chr4_mrna.txt.gz 2020-05-09 02:10 5.5K
chr5_mrna.sql 2020-05-09 02:10 2.1K
chr5_mrna.txt.gz 2020-05-09 02:10 2.6K
chr6_mrna.sql 2020-05-09 02:10 2.1K
chr6_mrna.txt.gz 2020-05-09 02:10 1.1K
chr7_mrna.sql 2020-05-09 02:10 2.1K
chr7_mrna.txt.gz 2020-05-09 02:10 4.4K
chr8_mrna.sql 2020-05-09 02:10 2.1K
chr8_mrna.txt.gz 2020-05-09 02:10 1.8K
chr9_mrna.sql 2020-05-09 02:10 2.1K
chr9_mrna.txt.gz 2020-05-09 02:10 1.5K
chrM_mrna.sql 2020-05-09 02:10 2.1K
chrM_mrna.txt.gz 2020-05-09 02:10 860
all_mrna.sql 2020-05-09 02:10 2.1K
all_mrna.txt.gz 2020-05-09 02:10 44K
mrnaOrientInfo.sql 2020-05-09 02:10 1.8K
mrnaOrientInfo.txt.gz 2020-05-09 02:10 18K
xenoRefGene.sql 2020-09-01 20:04 2.0K
xenoRefGene.txt.gz 2020-09-01 20:04 1.1M
xenoRefFlat.sql 2020-09-01 20:04 1.7K
xenoRefFlat.txt.gz 2020-09-01 20:04 960K
xenoRefSeqAli.sql 2020-09-01 20:04 2.1K
xenoRefSeqAli.txt.gz 2020-09-01 20:04 1.1M
gbLoaded.sql 2020-09-01 20:04 1.6K
gbLoaded.txt.gz 2020-09-01 20:04 43K
trackDb.sql 2023-03-28 13:53 2.1K
trackDb.txt.gz 2023-03-28 13:53 21K
hgFindSpec.sql 2023-03-28 13:53 1.8K
hgFindSpec.txt.gz 2023-03-28 13:53 894
tableDescriptions.sql 2024-12-07 02:03 1.5K
tableDescriptions.txt.gz 2024-12-07 02:03 6.9K
tableList.sql 2024-12-08 03:31 1.6K
tableList.txt.gz 2024-12-08 03:31 6.3K
bigFiles.sql 2024-12-08 03:31 1.4K
bigFiles.txt.gz 2024-12-08 03:31 33