This directory contains a dump of the UCSC genome annotation database for the Saccharomyces cerevisiae sequence dated 1 Oct. 2003 in the Saccharomyces Genome Database (http://www.yeastgenome.org/). Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=sacCer1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. ------------------------------------------------------------------ If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/sacCer1/database. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the annotations in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory - bigFiles.txt.gz 2024-11-10 03:27 33 chrM_est.txt.gz 2016-05-15 11:28 33 chrM_intronEst.txt.gz 2016-05-15 11:29 39 chromInfo.txt.gz 2004-01-14 17:03 218 grp.txt.gz 2014-03-02 04:14 218 sgdPep.sql 2013-10-01 12:48 331 samSubdir.sql 2013-10-01 12:48 345 yeastP2P.sql 2013-10-01 12:48 359 sgdToSgd.sql 2013-10-01 12:48 374 sgdToPfam.sql 2013-10-01 12:48 375 sgdToSwissProt.sql 2013-10-01 12:48 379 esRegGeneToModule.sql 2013-10-01 12:48 381 sgdLocalization.sql 2013-10-01 12:48 387 sgdDescription.sql 2013-10-01 12:48 391 sgdAbundance.sql 2013-10-01 12:48 394 sgdOtherDescription.sql 2013-10-01 12:48 401 choExpDistance.sql 2013-10-01 12:48 403 chromInfo.sql 2013-10-01 12:48 405 sgdIsoforms.sql 2013-10-01 12:48 409 extFile.sql 2013-10-01 12:48 445 esRegMotif.sql 2013-10-01 12:48 452 transRegCodeMotif.sql 2013-10-01 12:48 471 history.sql 2013-10-01 12:48 537 gcPercent.sql 2013-10-01 12:48 555 sgdClone.sql 2013-10-01 12:48 571 history.txt.gz 2004-09-13 06:09 584 sgdOther.sql 2013-10-01 12:48 594 esRegUpstreamRegion.sql 2013-10-01 12:48 598 sgdCanonical.sql 2013-10-01 12:48 616 protHomolog.sql 2013-10-01 12:48 621 transRegCodeProbe.sql 2013-10-01 12:48 638 phastConsElements.sql 2013-10-01 12:48 655 esRegGeneToMotif.sql 2013-10-01 12:48 656 sacBay_pwMaf.sql 2013-10-01 12:48 662 sacCas_pwMaf.sql 2013-10-01 12:48 662 sacKlu_pwMaf.sql 2013-10-01 12:48 662 sacKud_pwMaf.sql 2013-10-01 12:48 662 sacMik_pwMaf.sql 2013-10-01 12:48 662 sacPar_pwMaf.sql 2013-10-01 12:48 662 transRegCode.sql 2013-10-01 12:48 663 multizYeast.sql 2013-10-01 12:48 671 growthCondition.txt.gz 2011-09-12 00:03 685 drBlastTab.sql 2013-10-01 12:48 811 sgdBlastTab.sql 2013-10-01 12:48 813 sgdGene.sql 2013-10-01 12:48 833 chrM_mrna.txt.gz 2020-05-09 02:10 860 hgFindSpec.txt.gz 2023-03-28 13:53 894 phastCons.sql 2013-10-01 12:48 895 chr1_mrna.txt.gz 2020-05-09 02:10 1.0K chr6_mrna.txt.gz 2020-05-09 02:10 1.1K simpleRepeat.sql 2013-10-01 12:48 1.1K chr1_intronEst.txt.gz 2016-05-15 11:28 1.1K chr3_mrna.txt.gz 2020-05-09 02:10 1.1K ensPep.sql 2008-04-19 03:11 1.1K sgdToName.sql 2007-03-23 10:42 1.2K transRegCodeCondition.txt.gz 2013-11-10 22:13 1.2K ensGtp.sql 2008-04-19 03:11 1.3K growthCondition.sql 2011-09-12 00:03 1.3K uwFootprintsMappability.sql 2009-04-26 11:34 1.3K blastHg16KG.sql 2013-10-01 12:48 1.3K grp.sql 2014-03-02 04:14 1.4K oregannoAttr.sql 2016-05-15 11:29 1.4K uwFootprintsPrints.sql 2009-04-26 11:35 1.4K bigFiles.sql 2024-11-10 03:27 1.4K oregannoLink.sql 2016-05-15 11:29 1.4K transRegCodeCondition.sql 2013-11-10 22:13 1.5K tableDescriptions.sql 2024-11-09 02:03 1.5K extFile.txt.gz 2004-09-13 06:09 1.5K chr3_intronEst.txt.gz 2016-05-15 11:28 1.5K oreganno.sql 2016-05-15 11:29 1.5K chr9_mrna.txt.gz 2020-05-09 02:10 1.5K tableList.sql 2024-11-10 03:27 1.6K rnBlastTab.sql 2006-07-22 13:14 1.6K gbLoaded.sql 2020-09-01 20:04 1.6K dmBlastTab.sql 2008-11-03 03:18 1.6K mmBlastTab.sql 2007-10-20 17:54 1.6K xenoRefFlat.sql 2020-09-01 20:04 1.7K hgFindSpec.sql 2023-03-28 13:53 1.8K hgBlastTab.sql 2009-08-19 15:45 1.8K uwFootprintsTagCounts.sql 2009-04-26 11:34 1.8K chr8_mrna.txt.gz 2020-05-09 02:10 1.8K estOrientInfo.sql 2016-05-15 11:29 1.8K mrnaOrientInfo.sql 2020-05-09 02:10 1.8K ensGene.sql 2008-04-19 03:11 1.9K augustusGene.sql 2015-07-26 17:28 1.9K xenoRefGene.sql 2020-09-01 20:04 2.0K trackDb.sql 2023-03-28 13:53 2.1K chr1_est.sql 2016-05-15 11:28 2.1K chr2_est.sql 2016-05-15 11:29 2.1K chr3_est.sql 2016-05-15 11:28 2.1K chr4_est.sql 2016-05-15 11:28 2.1K chr5_est.sql 2016-05-15 11:28 2.1K chr6_est.sql 2016-05-15 11:28 2.1K chr7_est.sql 2016-05-15 11:29 2.1K chr8_est.sql 2016-05-15 11:28 2.1K chr9_est.sql 2016-05-15 11:28 2.1K chrM_est.sql 2016-05-15 11:28 2.1K chr10_est.sql 2016-05-15 11:28 2.1K chr11_est.sql 2016-05-15 11:28 2.1K chr12_est.sql 2016-05-15 11:28 2.1K chr13_est.sql 2016-05-15 11:28 2.1K chr14_est.sql 2016-05-15 11:28 2.1K chr15_est.sql 2016-05-15 11:28 2.1K chr16_est.sql 2016-05-15 11:28 2.1K all_est.sql 2016-05-15 11:28 2.1K chr1_intronEst.sql 2016-05-15 11:28 2.1K chr2_intronEst.sql 2016-05-15 11:29 2.1K chr3_intronEst.sql 2016-05-15 11:28 2.1K chr4_intronEst.sql 2016-05-15 11:28 2.1K chr5_intronEst.sql 2016-05-15 11:28 2.1K chr6_intronEst.sql 2016-05-15 11:28 2.1K chr7_intronEst.sql 2016-05-15 11:29 2.1K chr8_intronEst.sql 2016-05-15 11:28 2.1K chr9_intronEst.sql 2016-05-15 11:28 2.1K chrM_intronEst.sql 2016-05-15 11:29 2.1K chr10_intronEst.sql 2016-05-15 11:28 2.1K chr11_intronEst.sql 2016-05-15 11:28 2.1K chr12_intronEst.sql 2016-05-15 11:28 2.1K chr13_intronEst.sql 2016-05-15 11:28 2.1K chr14_intronEst.sql 2016-05-15 11:28 2.1K chr15_intronEst.sql 2016-05-15 11:29 2.1K chr16_intronEst.sql 2016-05-15 11:28 2.1K chr1_mrna.sql 2020-05-09 02:10 2.1K chr2_mrna.sql 2020-05-09 02:10 2.1K chr3_mrna.sql 2020-05-09 02:10 2.1K chr4_mrna.sql 2020-05-09 02:10 2.1K chr5_mrna.sql 2020-05-09 02:10 2.1K chr6_mrna.sql 2020-05-09 02:10 2.1K chr7_mrna.sql 2020-05-09 02:10 2.1K chr8_mrna.sql 2020-05-09 02:10 2.1K chr9_mrna.sql 2020-05-09 02:10 2.1K chrM_mrna.sql 2020-05-09 02:10 2.1K chr10_mrna.sql 2020-05-09 02:09 2.1K chr11_mrna.sql 2020-05-09 02:09 2.1K chr12_mrna.sql 2020-05-09 02:09 2.1K chr13_mrna.sql 2020-05-09 02:09 2.1K chr14_mrna.sql 2020-05-09 02:09 2.1K chr15_mrna.sql 2020-05-09 02:09 2.1K chr16_mrna.sql 2020-05-09 02:10 2.1K all_mrna.sql 2020-05-09 02:10 2.1K xenoRefSeqAli.sql 2020-09-01 20:04 2.1K chr14_intronEst.txt.gz 2016-05-15 11:28 2.4K chr11_mrna.txt.gz 2020-05-09 02:09 2.5K chr9_intronEst.txt.gz 2016-05-15 11:28 2.6K chr5_mrna.txt.gz 2020-05-09 02:10 2.6K gcPercent.txt.gz 2004-01-14 17:04 2.8K chr14_mrna.txt.gz 2020-05-09 02:09 2.8K chr6_intronEst.txt.gz 2016-05-15 11:28 2.9K chr16_mrna.txt.gz 2020-05-09 02:10 3.1K chr11_intronEst.txt.gz 2016-05-15 11:28 3.2K chr2_mrna.txt.gz 2020-05-09 02:10 3.2K chr15_mrna.txt.gz 2020-05-09 02:09 3.2K chr10_intronEst.txt.gz 2016-05-15 11:28 3.2K chr5_intronEst.txt.gz 2016-05-15 11:28 3.3K chr13_mrna.txt.gz 2020-05-09 02:09 3.4K chr10_mrna.txt.gz 2020-05-09 02:09 3.4K chr8_intronEst.txt.gz 2016-05-15 11:28 3.6K chr7_mrna.txt.gz 2020-05-09 02:10 4.4K chr12_mrna.txt.gz 2020-05-09 02:09 4.6K chr15_intronEst.txt.gz 2016-05-15 11:29 5.3K chr4_mrna.txt.gz 2020-05-09 02:10 5.5K chr13_intronEst.txt.gz 2016-05-15 11:28 5.5K chr12_intronEst.txt.gz 2016-05-15 11:28 5.7K tableList.txt.gz 2024-11-10 03:27 6.3K transRegCodeMotif.txt.gz 2004-12-22 21:39 6.3K chr16_intronEst.txt.gz 2016-05-15 11:28 6.6K tableDescriptions.txt.gz 2024-11-09 02:03 6.9K chr7_intronEst.txt.gz 2016-05-15 11:29 8.3K esRegGeneToModule.txt.gz 2004-09-28 17:12 9.1K chr2_intronEst.txt.gz 2016-05-15 11:29 9.3K chr1_est.txt.gz 2016-05-15 11:28 11K chr4_intronEst.txt.gz 2016-05-15 11:28 12K sgdOtherDescription.txt.gz 2004-01-14 17:04 13K samSubdir.txt.gz 2005-01-12 09:45 14K sgdClone.txt.gz 2004-01-14 17:04 16K esRegMotif.txt.gz 2004-09-28 17:12 17K mrnaOrientInfo.txt.gz 2020-05-09 02:10 18K esRegUpstreamRegion.txt.gz 2004-09-28 17:12 19K sgdAbundance.txt.gz 2004-01-14 17:04 19K sgdLocalization.txt.gz 2004-01-14 17:04 19K trackDb.txt.gz 2023-03-28 13:53 21K sgdToPfam.txt.gz 2004-04-17 05:21 22K chr9_est.txt.gz 2016-05-15 11:28 24K sgdOther.txt.gz 2004-01-14 17:04 24K sgdIsoforms.txt.gz 2004-01-14 17:04 27K sgdToSgd.txt.gz 2004-01-14 17:04 28K ensGtp.txt.gz 2008-04-19 03:11 29K chr6_est.txt.gz 2016-05-15 11:28 30K sgdToSwissProt.txt.gz 2004-01-14 17:04 32K chr3_est.txt.gz 2016-05-15 11:28 32K chr8_est.txt.gz 2016-05-15 11:28 32K simpleRepeat.txt.gz 2004-01-14 17:04 33K sacPar_pwMaf.txt.gz 2004-09-13 06:09 34K sgdToName.txt.gz 2007-03-23 10:42 36K esRegGeneToMotif.txt.gz 2004-09-28 17:12 37K gbLoaded.txt.gz 2020-09-01 20:04 43K all_mrna.txt.gz 2020-05-09 02:10 44K sacBay_pwMaf.txt.gz 2004-09-13 06:09 46K chr14_est.txt.gz 2016-05-15 11:28 46K chr11_est.txt.gz 2016-05-15 11:28 49K chr10_est.txt.gz 2016-05-15 11:28 50K dmBlastTab.txt.gz 2008-11-03 03:18 52K uwFootprintsPrints.txt.gz 2009-04-26 11:35 52K chr5_est.txt.gz 2016-05-15 11:28 53K sacMik_pwMaf.txt.gz 2004-09-13 06:09 56K mmBlastTab.txt.gz 2007-10-20 17:54 58K hgBlastTab.txt.gz 2009-08-19 15:45 59K sacKud_pwMaf.txt.gz 2004-09-13 06:09 63K rnBlastTab.txt.gz 2006-07-22 13:14 68K chr13_est.txt.gz 2016-05-15 11:28 70K chr2_est.txt.gz 2016-05-15 11:29 71K sacCas_pwMaf.txt.gz 2004-09-13 06:09 77K chr12_est.txt.gz 2016-05-15 11:28 81K oregannoLink.txt.gz 2016-05-15 11:29 83K oreganno.txt.gz 2016-05-15 11:29 83K drBlastTab.txt.gz 2004-01-14 17:03 83K chr7_est.txt.gz 2016-05-15 11:29 83K chr16_est.txt.gz 2016-05-15 11:28 84K sgdCanonical.txt.gz 2004-01-14 17:04 89K uwFootprintsMappability.txt.gz 2009-04-26 11:34 99K chr15_est.txt.gz 2016-05-15 11:29 101K augustusGene.txt.gz 2015-07-26 17:28 107K sgdGene.txt.gz 2004-01-14 17:04 112K sacKlu_pwMaf.txt.gz 2004-09-13 06:09 112K oregannoAttr.txt.gz 2016-05-15 11:29 118K transRegCodeProbe.txt.gz 2004-12-22 21:39 138K sgdDescription.txt.gz 2004-01-14 17:04 139K chr4_est.txt.gz 2016-05-15 11:28 149K ensGene.txt.gz 2008-04-19 03:11 150K blastHg16KG.txt.gz 2004-09-28 17:12 270K estOrientInfo.txt.gz 2016-05-15 11:29 303K phastCons.txt.gz 2004-09-30 17:31 305K phastConsElements.txt.gz 2004-09-30 17:31 380K multizYeast.txt.gz 2004-01-14 17:04 501K xenoRefFlat.txt.gz 2020-09-01 20:04 960K all_est.txt.gz 2016-05-15 11:28 961K sgdBlastTab.txt.gz 2004-01-14 17:04 1.0M xenoRefGene.txt.gz 2020-09-01 20:04 1.1M xenoRefSeqAli.txt.gz 2020-09-01 20:04 1.1M transRegCode.txt.gz 2004-12-22 21:39 1.4M sgdPep.txt.gz 2004-01-14 17:04 1.6M ensPep.txt.gz 2008-04-19 03:11 1.7M protHomolog.txt.gz 2005-01-12 09:45 3.2M yeastP2P.txt.gz 2005-06-16 05:00 27M choExpDistance.txt.gz 2004-01-14 17:03 34M uwFootprintsTagCounts.txt.gz 2009-04-26 11:35 34M