This directory contains a dump of the UCSC genome annotation
database for the Saccharomyces cerevisiae sequence dated 1 Oct. 2003
in the Saccharomyces Genome Database (http://www.yeastgenome.org/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=sacCer1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/sacCer1/database. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-05-05 03:30 33
bigFiles.sql 2024-05-05 03:30 1.4K
tableList.txt.gz 2024-05-05 03:30 6.5K
tableList.sql 2024-05-05 03:30 1.6K
tableDescriptions.txt.gz 2024-05-04 02:04 6.9K
tableDescriptions.sql 2024-05-04 02:04 1.5K
hgFindSpec.txt.gz 2023-03-28 13:53 894
hgFindSpec.sql 2023-03-28 13:53 1.8K
trackDb.txt.gz 2023-03-28 13:53 21K
trackDb.sql 2023-03-28 13:53 2.1K
hgFindSpec_pushedout.txt.gz 2021-12-27 12:21 857
hgFindSpec_pushedout.sql 2021-12-27 12:21 1.8K
trackDb_pushedout.txt.gz 2021-12-27 12:21 21K
trackDb_pushedout.sql 2021-12-27 12:21 2.1K
gbLoaded.txt.gz 2020-09-01 20:04 43K
gbLoaded.sql 2020-09-01 20:04 1.6K
xenoRefSeqAli.txt.gz 2020-09-01 20:04 1.1M
xenoRefSeqAli.sql 2020-09-01 20:04 2.1K
xenoRefFlat.txt.gz 2020-09-01 20:04 960K
xenoRefFlat.sql 2020-09-01 20:04 1.7K
xenoRefGene.txt.gz 2020-09-01 20:04 1.1M
xenoRefGene.sql 2020-09-01 20:04 2.0K
mrnaOrientInfo.txt.gz 2020-05-09 02:10 18K
mrnaOrientInfo.sql 2020-05-09 02:10 1.8K
all_mrna.txt.gz 2020-05-09 02:10 44K
all_mrna.sql 2020-05-09 02:10 2.1K
chrM_mrna.txt.gz 2020-05-09 02:10 860
chrM_mrna.sql 2020-05-09 02:10 2.1K
chr9_mrna.txt.gz 2020-05-09 02:10 1.5K
chr9_mrna.sql 2020-05-09 02:10 2.1K
chr8_mrna.txt.gz 2020-05-09 02:10 1.8K
chr8_mrna.sql 2020-05-09 02:10 2.1K
chr7_mrna.txt.gz 2020-05-09 02:10 4.4K
chr7_mrna.sql 2020-05-09 02:10 2.1K
chr6_mrna.txt.gz 2020-05-09 02:10 1.1K
chr6_mrna.sql 2020-05-09 02:10 2.1K
chr5_mrna.txt.gz 2020-05-09 02:10 2.6K
chr5_mrna.sql 2020-05-09 02:10 2.1K
chr4_mrna.txt.gz 2020-05-09 02:10 5.5K
chr4_mrna.sql 2020-05-09 02:10 2.1K
chr3_mrna.txt.gz 2020-05-09 02:10 1.1K
chr3_mrna.sql 2020-05-09 02:10 2.1K
chr2_mrna.txt.gz 2020-05-09 02:10 3.2K
chr2_mrna.sql 2020-05-09 02:10 2.1K
chr1_mrna.txt.gz 2020-05-09 02:10 1.0K
chr1_mrna.sql 2020-05-09 02:10 2.1K
chr16_mrna.txt.gz 2020-05-09 02:10 3.1K
chr16_mrna.sql 2020-05-09 02:10 2.1K
chr15_mrna.txt.gz 2020-05-09 02:09 3.2K
chr15_mrna.sql 2020-05-09 02:09 2.1K
chr14_mrna.txt.gz 2020-05-09 02:09 2.8K
chr14_mrna.sql 2020-05-09 02:09 2.1K
chr13_mrna.txt.gz 2020-05-09 02:09 3.4K
chr13_mrna.sql 2020-05-09 02:09 2.1K
chr12_mrna.txt.gz 2020-05-09 02:09 4.6K
chr12_mrna.sql 2020-05-09 02:09 2.1K
chr11_mrna.txt.gz 2020-05-09 02:09 2.5K
chr11_mrna.sql 2020-05-09 02:09 2.1K
chr10_mrna.txt.gz 2020-05-09 02:09 3.4K
chr10_mrna.sql 2020-05-09 02:09 2.1K
oregannoLink.txt.gz 2016-05-15 11:29 83K
oregannoLink.sql 2016-05-15 11:29 1.4K
oregannoAttr.txt.gz 2016-05-15 11:29 118K
oregannoAttr.sql 2016-05-15 11:29 1.4K
oreganno.txt.gz 2016-05-15 11:29 83K
oreganno.sql 2016-05-15 11:29 1.5K
estOrientInfo.txt.gz 2016-05-15 11:29 303K
estOrientInfo.sql 2016-05-15 11:29 1.8K
chrM_intronEst.txt.gz 2016-05-15 11:29 39
chrM_intronEst.sql 2016-05-15 11:29 2.1K
chr15_intronEst.txt.gz 2016-05-15 11:29 5.3K
chr15_intronEst.sql 2016-05-15 11:29 2.1K
chr15_est.txt.gz 2016-05-15 11:29 101K
chr7_intronEst.txt.gz 2016-05-15 11:29 8.3K
chr7_intronEst.sql 2016-05-15 11:29 2.1K
chr7_est.txt.gz 2016-05-15 11:29 83K
chr7_est.sql 2016-05-15 11:29 2.1K
chr2_intronEst.txt.gz 2016-05-15 11:29 9.3K
chr2_intronEst.sql 2016-05-15 11:29 2.1K
chr2_est.txt.gz 2016-05-15 11:29 71K
chr2_est.sql 2016-05-15 11:29 2.1K
chrM_est.txt.gz 2016-05-15 11:28 33
chrM_est.sql 2016-05-15 11:28 2.1K
chr16_intronEst.txt.gz 2016-05-15 11:28 6.6K
chr16_intronEst.sql 2016-05-15 11:28 2.1K
chr16_est.txt.gz 2016-05-15 11:28 84K
chr16_est.sql 2016-05-15 11:28 2.1K
chr15_est.sql 2016-05-15 11:28 2.1K
chr14_intronEst.txt.gz 2016-05-15 11:28 2.4K
chr14_intronEst.sql 2016-05-15 11:28 2.1K
chr14_est.txt.gz 2016-05-15 11:28 46K
chr14_est.sql 2016-05-15 11:28 2.1K
chr13_intronEst.txt.gz 2016-05-15 11:28 5.5K
chr13_intronEst.sql 2016-05-15 11:28 2.1K
chr13_est.txt.gz 2016-05-15 11:28 70K
chr13_est.sql 2016-05-15 11:28 2.1K
chr12_intronEst.txt.gz 2016-05-15 11:28 5.7K
chr12_intronEst.sql 2016-05-15 11:28 2.1K
chr12_est.txt.gz 2016-05-15 11:28 81K
chr12_est.sql 2016-05-15 11:28 2.1K
chr11_intronEst.txt.gz 2016-05-15 11:28 3.2K
chr11_intronEst.sql 2016-05-15 11:28 2.1K
chr11_est.txt.gz 2016-05-15 11:28 49K
chr11_est.sql 2016-05-15 11:28 2.1K
chr6_intronEst.txt.gz 2016-05-15 11:28 2.9K
chr6_intronEst.sql 2016-05-15 11:28 2.1K
chr6_est.txt.gz 2016-05-15 11:28 30K
chr6_est.sql 2016-05-15 11:28 2.1K
chr5_intronEst.txt.gz 2016-05-15 11:28 3.3K
chr5_intronEst.sql 2016-05-15 11:28 2.1K
chr5_est.txt.gz 2016-05-15 11:28 53K
chr5_est.sql 2016-05-15 11:28 2.1K
chr4_intronEst.txt.gz 2016-05-15 11:28 12K
chr4_intronEst.sql 2016-05-15 11:28 2.1K
chr4_est.txt.gz 2016-05-15 11:28 149K
chr4_est.sql 2016-05-15 11:28 2.1K
chr10_intronEst.txt.gz 2016-05-15 11:28 3.2K
chr10_intronEst.sql 2016-05-15 11:28 2.1K
chr10_est.txt.gz 2016-05-15 11:28 50K
chr10_est.sql 2016-05-15 11:28 2.1K
chr9_intronEst.txt.gz 2016-05-15 11:28 2.6K
chr9_intronEst.sql 2016-05-15 11:28 2.1K
chr9_est.txt.gz 2016-05-15 11:28 24K
chr9_est.sql 2016-05-15 11:28 2.1K
chr8_intronEst.txt.gz 2016-05-15 11:28 3.6K
chr8_intronEst.sql 2016-05-15 11:28 2.1K
chr8_est.txt.gz 2016-05-15 11:28 32K
chr8_est.sql 2016-05-15 11:28 2.1K
chr3_intronEst.txt.gz 2016-05-15 11:28 1.5K
chr3_intronEst.sql 2016-05-15 11:28 2.1K
chr3_est.txt.gz 2016-05-15 11:28 32K
chr3_est.sql 2016-05-15 11:28 2.1K
chr1_intronEst.txt.gz 2016-05-15 11:28 1.1K
chr1_intronEst.sql 2016-05-15 11:28 2.1K
chr1_est.txt.gz 2016-05-15 11:28 11K
chr1_est.sql 2016-05-15 11:28 2.1K
all_est.txt.gz 2016-05-15 11:28 961K
all_est.sql 2016-05-15 11:28 2.1K
augustusGene.txt.gz 2015-07-26 17:28 107K
augustusGene.sql 2015-07-26 17:28 1.9K
grp.txt.gz 2014-03-02 04:14 218
grp.sql 2014-03-02 04:14 1.4K
transRegCodeCondition.txt.gz 2013-11-10 22:13 1.2K
transRegCodeCondition.sql 2013-11-10 22:13 1.5K
yeastP2P.sql 2013-10-01 12:48 359
transRegCodeProbe.sql 2013-10-01 12:48 638
transRegCodeMotif.sql 2013-10-01 12:48 471
transRegCode.sql 2013-10-01 12:48 663
simpleRepeat.sql 2013-10-01 12:48 1.1K
sgdToSwissProt.sql 2013-10-01 12:48 379
sgdToSgd.sql 2013-10-01 12:48 374
sgdToPfam.sql 2013-10-01 12:48 375
sgdPep.sql 2013-10-01 12:48 331
sgdOtherDescription.sql 2013-10-01 12:48 401
sgdOther.sql 2013-10-01 12:48 594
sgdLocalization.sql 2013-10-01 12:48 387
sgdIsoforms.sql 2013-10-01 12:48 409
sgdGene.sql 2013-10-01 12:48 833
sgdDescription.sql 2013-10-01 12:48 391
sgdClone.sql 2013-10-01 12:48 571
sgdCanonical.sql 2013-10-01 12:48 616
sgdBlastTab.sql 2013-10-01 12:48 813
sgdAbundance.sql 2013-10-01 12:48 394
samSubdir.sql 2013-10-01 12:48 345
sacPar_pwMaf.sql 2013-10-01 12:48 662
sacMik_pwMaf.sql 2013-10-01 12:48 662
sacKud_pwMaf.sql 2013-10-01 12:48 662
sacKlu_pwMaf.sql 2013-10-01 12:48 662
sacCas_pwMaf.sql 2013-10-01 12:48 662
sacBay_pwMaf.sql 2013-10-01 12:48 662
protHomolog.sql 2013-10-01 12:48 621
phastConsElements.sql 2013-10-01 12:48 655
phastCons.sql 2013-10-01 12:48 895
multizYeast.sql 2013-10-01 12:48 671
history.sql 2013-10-01 12:48 537
gcPercent.sql 2013-10-01 12:48 555
extFile.sql 2013-10-01 12:48 445
esRegUpstreamRegion.sql 2013-10-01 12:48 598
esRegMotif.sql 2013-10-01 12:48 452
esRegGeneToMotif.sql 2013-10-01 12:48 656
esRegGeneToModule.sql 2013-10-01 12:48 381
drBlastTab.sql 2013-10-01 12:48 811
chromInfo.sql 2013-10-01 12:48 405
choExpDistance.sql 2013-10-01 12:48 403
blastHg16KG.sql 2013-10-01 12:48 1.3K
growthCondition.txt.gz 2011-09-12 00:03 685
growthCondition.sql 2011-09-12 00:03 1.3K
hgBlastTab.txt.gz 2009-08-19 15:45 59K
hgBlastTab.sql 2009-08-19 15:45 1.8K
uwFootprintsPrints.txt.gz 2009-04-26 11:35 52K
uwFootprintsPrints.sql 2009-04-26 11:35 1.4K
uwFootprintsTagCounts.txt.gz 2009-04-26 11:35 34M
uwFootprintsTagCounts.sql 2009-04-26 11:34 1.8K
uwFootprintsMappability.txt.gz 2009-04-26 11:34 99K
uwFootprintsMappability.sql 2009-04-26 11:34 1.3K
dmBlastTab.txt.gz 2008-11-03 03:18 52K
dmBlastTab.sql 2008-11-03 03:18 1.6K
ensPep.txt.gz 2008-04-19 03:11 1.7M
ensPep.sql 2008-04-19 03:11 1.1K
ensGtp.txt.gz 2008-04-19 03:11 29K
ensGtp.sql 2008-04-19 03:11 1.3K
ensGene.txt.gz 2008-04-19 03:11 150K
ensGene.sql 2008-04-19 03:11 1.9K
mmBlastTab.txt.gz 2007-10-20 17:54 58K
mmBlastTab.sql 2007-10-20 17:54 1.6K
sgdToName.txt.gz 2007-03-23 10:42 36K
sgdToName.sql 2007-03-23 10:42 1.2K
rnBlastTab.txt.gz 2006-07-22 13:14 68K
rnBlastTab.sql 2006-07-22 13:14 1.6K
yeastP2P.txt.gz 2005-06-16 05:00 27M
samSubdir.txt.gz 2005-01-12 09:45 14K
protHomolog.txt.gz 2005-01-12 09:45 3.2M
transRegCodeProbe.txt.gz 2004-12-22 21:39 138K
transRegCodeMotif.txt.gz 2004-12-22 21:39 6.3K
transRegCode.txt.gz 2004-12-22 21:39 1.4M
phastConsElements.txt.gz 2004-09-30 17:31 380K
phastCons.txt.gz 2004-09-30 17:31 305K
esRegUpstreamRegion.txt.gz 2004-09-28 17:12 19K
esRegMotif.txt.gz 2004-09-28 17:12 17K
esRegGeneToMotif.txt.gz 2004-09-28 17:12 37K
esRegGeneToModule.txt.gz 2004-09-28 17:12 9.1K
blastHg16KG.txt.gz 2004-09-28 17:12 270K
sacPar_pwMaf.txt.gz 2004-09-13 06:09 34K
sacMik_pwMaf.txt.gz 2004-09-13 06:09 56K
sacKud_pwMaf.txt.gz 2004-09-13 06:09 63K
sacKlu_pwMaf.txt.gz 2004-09-13 06:09 112K
sacCas_pwMaf.txt.gz 2004-09-13 06:09 77K
sacBay_pwMaf.txt.gz 2004-09-13 06:09 46K
history.txt.gz 2004-09-13 06:09 584
extFile.txt.gz 2004-09-13 06:09 1.5K
sgdToPfam.txt.gz 2004-04-17 05:21 22K
simpleRepeat.txt.gz 2004-01-14 17:04 33K
sgdToSwissProt.txt.gz 2004-01-14 17:04 32K
sgdToSgd.txt.gz 2004-01-14 17:04 28K
sgdPep.txt.gz 2004-01-14 17:04 1.6M
sgdOtherDescription.txt.gz 2004-01-14 17:04 13K
sgdOther.txt.gz 2004-01-14 17:04 24K
sgdLocalization.txt.gz 2004-01-14 17:04 19K
sgdIsoforms.txt.gz 2004-01-14 17:04 27K
sgdGene.txt.gz 2004-01-14 17:04 112K
sgdDescription.txt.gz 2004-01-14 17:04 139K
sgdClone.txt.gz 2004-01-14 17:04 16K
sgdCanonical.txt.gz 2004-01-14 17:04 89K
sgdBlastTab.txt.gz 2004-01-14 17:04 1.0M
sgdAbundance.txt.gz 2004-01-14 17:04 19K
multizYeast.txt.gz 2004-01-14 17:04 501K
gcPercent.txt.gz 2004-01-14 17:04 2.8K
drBlastTab.txt.gz 2004-01-14 17:03 83K
chromInfo.txt.gz 2004-01-14 17:03 218
choExpDistance.txt.gz 2004-01-14 17:03 34M