This directory contains the v.3.0 draft assembly of the Fugu
rubripes genome (fr1, Aug. 2002) provided by the US DOE Joint
Genome Institute (JGI). The annotations are from UCSC and collaborators
worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=fr1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/fr1/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
chrUn_chainDanRer4Link.txt.gz 2006-05-29 02:30 103M
chrUn_chainGasAcu1Link.txt.gz 2007-03-29 09:35 99M
chrUn_chainHg18Link.txt.gz 2006-04-16 07:21 54M
chrUn_chainMm8Link.txt.gz 2006-04-28 03:42 34M
chrUn_chainDanRer4.txt.gz 2006-05-29 02:26 17M
chrUn_est.txt.gz 2019-03-17 09:24 14M
all_est.txt.gz 2019-03-17 09:24 14M
chrUn_blatHg16.txt.gz 2003-09-24 11:07 13M
chrUn_chainHg18.txt.gz 2006-04-16 07:20 12M
chrUn_chainGasAcu1.txt.gz 2007-03-29 09:33 11M
netGasAcu1.txt.gz 2007-03-29 09:33 10M
netDanRer4.txt.gz 2006-05-29 02:37 9.1M
genscanPep.txt.gz 2003-09-24 11:07 8.6M
chrUn_intronEst.txt.gz 2019-03-17 09:24 7.6M
chrUn_chainMm8.txt.gz 2006-04-28 03:42 6.1M
genomicSuperDups.txt.gz 2006-07-05 07:02 5.4M
ensPep.txt.gz 2003-11-18 10:11 4.9M
netHg18.txt.gz 2006-04-16 07:22 4.9M
netMm8.txt.gz 2006-04-28 03:43 4.8M
chrUn_rmsk.txt.gz 2003-09-24 11:07 3.8M
estOrientInfo.txt.gz 2019-03-17 09:24 3.3M
blastHg17KG.txt.gz 2005-05-14 05:58 3.2M
augustusGene.txt.gz 2015-07-26 13:30 2.6M
genscan.txt.gz 2003-09-24 11:07 2.1M
simpleRepeat.txt.gz 2003-09-24 11:07 2.0M
ensGene.txt.gz 2003-09-24 11:07 1.6M
ecoresHg16.txt.gz 2004-06-10 09:51 1.0M
ecoresRn3.txt.gz 2004-06-10 09:51 1.0M
cpgIsland.txt.gz 2003-09-24 11:07 754K
chrUn_gap.txt.gz 2003-09-30 06:53 476K
chrUn_gold.txt.gz 2003-09-24 11:07 326K
ensGtp.txt.gz 2003-11-18 10:11 273K
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
microsat.txt.gz 2015-08-23 16:25 136K
gcPercent.txt.gz 2003-09-24 11:07 108K
chrUn_mrna.txt.gz 2020-05-08 00:49 77K
all_mrna.txt.gz 2020-05-08 00:49 77K
gbLoaded.txt.gz 2020-08-21 19:59 41K
trackDb.txt.gz 2023-03-28 13:49 21K
trackDb_pushedout.txt.gz 2021-12-27 12:21 21K
mrnaOrientInfo.txt.gz 2020-05-08 00:49 19K
tableDescriptions.txt.gz 2024-04-20 02:03 5.6K
tableList.txt.gz 2024-04-21 03:33 3.3K
genomicSuperDups.sql 2006-07-05 07:02 2.5K
netGasAcu1.sql 2007-03-29 09:32 2.2K
netDanRer4.sql 2006-05-29 02:37 2.2K
all_mrna.sql 2020-05-08 00:49 2.1K
chrUn_mrna.sql 2020-05-08 00:49 2.1K
chrUn_intronEst.sql 2019-03-17 09:24 2.1K
all_est.sql 2019-03-17 09:24 2.1K
chrUn_est.sql 2019-03-17 09:24 2.1K
trackDb_pushedout.sql 2021-12-27 12:21 2.1K
trackDb.sql 2023-03-28 13:49 2.1K
augustusGene.sql 2015-07-26 13:30 1.9K
mrnaOrientInfo.sql 2020-05-08 00:49 1.8K
hgFindSpec_pushedout.sql 2021-12-27 12:21 1.8K
estOrientInfo.sql 2019-03-17 09:24 1.8K
hgFindSpec.sql 2023-03-28 13:49 1.8K
chrUn_chainGasAcu1.sql 2007-03-29 09:33 1.7K
chrUn_chainDanRer4.sql 2006-05-29 02:25 1.6K
gbLoaded.sql 2020-08-21 19:59 1.6K
tableList.sql 2024-04-21 03:33 1.6K
microsat.sql 2015-08-23 16:25 1.5K
tableDescriptions.sql 2024-04-20 02:03 1.5K
chrUn_chainGasAcu1Link.sql 2007-03-29 09:33 1.4K
bigFiles.sql 2024-04-21 03:33 1.4K
chrUn_chainDanRer4Link.sql 2006-05-29 02:26 1.4K
grp.sql 2014-03-02 03:40 1.4K
blastHg17KG.sql 2013-10-01 12:48 1.3K
netHg18.sql 2013-10-01 12:48 1.3K
netMm8.sql 2013-10-01 12:48 1.3K
chrUn_blatHg16.sql 2013-10-01 12:48 1.3K
simpleRepeat.sql 2013-10-01 12:48 1.1K
chrUn_rmsk.sql 2013-10-01 12:48 1.0K
ecoresHg16.sql 2013-10-01 12:48 944
ecoresRn3.sql 2013-10-01 12:48 942
chrUn_chainHg18.sql 2013-10-01 12:48 852
chrUn_chainMm8.sql 2013-10-01 12:48 808
chrUn_gold.sql 2013-10-01 12:48 781
genscan.sql 2013-10-01 12:48 740
ensGene.sql 2013-10-01 12:48 740
hgFindSpec.txt.gz 2023-03-28 13:49 738
cpgIsland.sql 2013-10-01 12:48 706
chrUn_gap.sql 2013-10-01 12:48 704
hgFindSpec_pushedout.txt.gz 2021-12-27 12:21 699
seq.sql 2013-10-01 12:48 588
chrUn_chainHg18Link.sql 2013-10-01 12:48 575
chrUn_chainMm8Link.sql 2013-10-01 12:48 573
gcPercent.sql 2013-10-01 12:48 544
history.sql 2013-10-01 12:48 499
extFile.sql 2013-10-01 12:48 443
ensGtp.sql 2013-10-01 12:48 436
chromInfo.sql 2013-10-01 12:48 394
genscanPep.sql 2013-10-01 12:48 328
gbDelete_tmp.sql 2013-10-01 12:48 322
ensPep.sql 2013-10-01 12:48 320
history.txt.gz 2003-09-24 11:07 263
grp.txt.gz 2014-03-02 03:40 223
chromInfo.txt.gz 2003-09-24 11:07 70
bigFiles.txt.gz 2024-04-21 03:33 33
extFile.txt.gz 2003-11-18 10:10 32
seq.txt.gz 2003-11-18 10:10 28