This directory contains the v.3.0 draft assembly of the Fugu 
rubripes genome (fr1, Aug. 2002) provided by the US DOE Joint
Genome Institute (JGI). The annotations are from UCSC and collaborators 
worldwide.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=fr1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, 
then go to the directory goldenPath/fr1/database/. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely usable for any purpose.

      Name                          Last modified      Size  Description
Parent Directory - seq.txt.gz 2003-11-18 10:10 28 extFile.txt.gz 2003-11-18 10:10 32 bigFiles.txt.gz 2022-12-04 03:10 33 chromInfo.txt.gz 2003-09-24 11:07 70 grp.txt.gz 2014-03-02 03:40 223 history.txt.gz 2003-09-24 11:07 263 ensPep.sql 2013-10-01 12:48 320 gbDelete_tmp.sql 2013-10-01 12:48 322 genscanPep.sql 2013-10-01 12:48 328 chromInfo.sql 2013-10-01 12:48 394 ensGtp.sql 2013-10-01 12:48 436 extFile.sql 2013-10-01 12:48 443 history.sql 2013-10-01 12:48 499 gcPercent.sql 2013-10-01 12:48 544 chrUn_chainMm8Link.sql 2013-10-01 12:48 573 chrUn_chainHg18Link.sql 2013-10-01 12:48 575 seq.sql 2013-10-01 12:48 588 hgFindSpec.txt.gz 2021-12-27 12:21 689 chrUn_gap.sql 2013-10-01 12:48 704 cpgIsland.sql 2013-10-01 12:48 706 ensGene.sql 2013-10-01 12:48 740 genscan.sql 2013-10-01 12:48 740 chrUn_gold.sql 2013-10-01 12:48 781 chrUn_chainMm8.sql 2013-10-01 12:48 808 chrUn_chainHg18.sql 2013-10-01 12:48 852 ecoresRn3.sql 2013-10-01 12:48 942 ecoresHg16.sql 2013-10-01 12:48 944 chrUn_rmsk.sql 2013-10-01 12:48 1.0K simpleRepeat.sql 2013-10-01 12:48 1.1K chrUn_blatHg16.sql 2013-10-01 12:48 1.3K netMm8.sql 2013-10-01 12:48 1.3K netHg18.sql 2013-10-01 12:48 1.3K blastHg17KG.sql 2013-10-01 12:48 1.3K bigFiles.sql 2022-12-04 03:10 1.4K grp.sql 2014-03-02 03:40 1.4K chrUn_chainDanRer4Link.sql 2006-05-29 02:26 1.4K chrUn_chainGasAcu1Link.sql 2007-03-29 09:33 1.4K tableDescriptions.sql 2021-01-14 06:34 1.4K microsat.sql 2015-08-23 16:25 1.5K tableList.sql 2022-12-04 03:10 1.6K gbLoaded.sql 2020-08-21 19:59 1.6K chrUn_chainDanRer4.sql 2006-05-29 02:25 1.6K chrUn_chainGasAcu1.sql 2007-03-29 09:33 1.7K hgFindSpec.sql 2021-12-27 12:21 1.8K estOrientInfo.sql 2019-03-17 09:24 1.8K mrnaOrientInfo.sql 2020-05-08 00:49 1.8K augustusGene.sql 2015-07-26 13:30 1.9K trackDb.sql 2021-12-27 12:21 2.1K chrUn_est.sql 2019-03-17 09:24 2.1K chrUn_mrna.sql 2020-05-08 00:49 2.1K all_est.sql 2019-03-17 09:24 2.1K all_mrna.sql 2020-05-08 00:49 2.1K chrUn_intronEst.sql 2019-03-17 09:24 2.1K netDanRer4.sql 2006-05-29 02:37 2.2K netGasAcu1.sql 2007-03-29 09:32 2.2K genomicSuperDups.sql 2006-07-05 07:02 2.5K tableList.txt.gz 2022-12-04 03:10 3.1K tableDescriptions.txt.gz 2021-01-14 06:34 5.6K mrnaOrientInfo.txt.gz 2020-05-08 00:49 19K trackDb.txt.gz 2021-12-27 12:21 21K gbLoaded.txt.gz 2020-08-21 19:59 41K all_mrna.txt.gz 2020-05-08 00:49 77K chrUn_mrna.txt.gz 2020-05-08 00:49 77K gcPercent.txt.gz 2003-09-24 11:07 108K microsat.txt.gz 2015-08-23 16:25 136K gbDelete_tmp.txt.gz 2005-09-27 05:01 180K ensGtp.txt.gz 2003-11-18 10:11 273K chrUn_gold.txt.gz 2003-09-24 11:07 326K chrUn_gap.txt.gz 2003-09-30 06:53 476K cpgIsland.txt.gz 2003-09-24 11:07 754K ecoresRn3.txt.gz 2004-06-10 09:51 1.0M ecoresHg16.txt.gz 2004-06-10 09:51 1.0M ensGene.txt.gz 2003-09-24 11:07 1.6M simpleRepeat.txt.gz 2003-09-24 11:07 2.0M genscan.txt.gz 2003-09-24 11:07 2.1M augustusGene.txt.gz 2015-07-26 13:30 2.6M blastHg17KG.txt.gz 2005-05-14 05:58 3.2M estOrientInfo.txt.gz 2019-03-17 09:24 3.3M chrUn_rmsk.txt.gz 2003-09-24 11:07 3.8M netMm8.txt.gz 2006-04-28 03:43 4.8M netHg18.txt.gz 2006-04-16 07:22 4.9M ensPep.txt.gz 2003-11-18 10:11 4.9M genomicSuperDups.txt.gz 2006-07-05 07:02 5.4M chrUn_chainMm8.txt.gz 2006-04-28 03:42 6.1M chrUn_intronEst.txt.gz 2019-03-17 09:24 7.6M genscanPep.txt.gz 2003-09-24 11:07 8.6M netDanRer4.txt.gz 2006-05-29 02:37 9.1M netGasAcu1.txt.gz 2007-03-29 09:33 10M chrUn_chainGasAcu1.txt.gz 2007-03-29 09:33 11M chrUn_chainHg18.txt.gz 2006-04-16 07:20 12M chrUn_blatHg16.txt.gz 2003-09-24 11:07 13M all_est.txt.gz 2019-03-17 09:24 14M chrUn_est.txt.gz 2019-03-17 09:24 14M chrUn_chainDanRer4.txt.gz 2006-05-29 02:26 17M chrUn_chainMm8Link.txt.gz 2006-04-28 03:42 34M chrUn_chainHg18Link.txt.gz 2006-04-16 07:21 54M chrUn_chainGasAcu1Link.txt.gz 2007-03-29 09:35 99M chrUn_chainDanRer4Link.txt.gz 2006-05-29 02:30 103M