This directory contains the v.3.0 draft assembly of the Fugu 
rubripes genome (fr1, Aug. 2002) provided by the US DOE Joint
Genome Institute (JGI). The annotations are from UCSC and collaborators 
worldwide.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=fr1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, 
then go to the directory goldenPath/fr1/database/. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely usable for any purpose.

      Name                          Last modified      Size  Description
Parent Directory - chrUn_blatHg16.txt.gz 2003-09-24 11:07 13M chrUn_gold.txt.gz 2003-09-24 11:07 326K chrUn_rmsk.txt.gz 2003-09-24 11:07 3.8M chromInfo.txt.gz 2003-09-24 11:07 70 cpgIsland.txt.gz 2003-09-24 11:07 754K ensGene.txt.gz 2003-09-24 11:07 1.6M gcPercent.txt.gz 2003-09-24 11:07 108K genscan.txt.gz 2003-09-24 11:07 2.1M genscanPep.txt.gz 2003-09-24 11:07 8.6M history.txt.gz 2003-09-24 11:07 263 simpleRepeat.txt.gz 2003-09-24 11:07 2.0M chrUn_gap.txt.gz 2003-09-30 06:53 476K extFile.txt.gz 2003-11-18 10:10 32 seq.txt.gz 2003-11-18 10:10 28 ensGtp.txt.gz 2003-11-18 10:11 273K ensPep.txt.gz 2003-11-18 10:11 4.9M ecoresHg16.txt.gz 2004-06-10 09:51 1.0M ecoresRn3.txt.gz 2004-06-10 09:51 1.0M blastHg17KG.txt.gz 2005-05-14 05:58 3.2M gbDelete_tmp.txt.gz 2005-09-27 05:01 180K chrUn_chainHg18.txt.gz 2006-04-16 07:20 12M chrUn_chainHg18Link.txt.gz 2006-04-16 07:21 54M netHg18.txt.gz 2006-04-16 07:22 4.9M chrUn_chainMm8Link.txt.gz 2006-04-28 03:42 34M chrUn_chainMm8.txt.gz 2006-04-28 03:42 6.1M netMm8.txt.gz 2006-04-28 03:43 4.8M chrUn_chainDanRer4.sql 2006-05-29 02:25 1.6K chrUn_chainDanRer4.txt.gz 2006-05-29 02:26 17M chrUn_chainDanRer4Link.sql 2006-05-29 02:26 1.4K chrUn_chainDanRer4Link.txt.gz 2006-05-29 02:30 103M netDanRer4.sql 2006-05-29 02:37 2.2K netDanRer4.txt.gz 2006-05-29 02:37 9.1M genomicSuperDups.sql 2006-07-05 07:02 2.5K genomicSuperDups.txt.gz 2006-07-05 07:02 5.4M netGasAcu1.sql 2007-03-29 09:32 2.2K netGasAcu1.txt.gz 2007-03-29 09:33 10M chrUn_chainGasAcu1.sql 2007-03-29 09:33 1.7K chrUn_chainGasAcu1.txt.gz 2007-03-29 09:33 11M chrUn_chainGasAcu1Link.sql 2007-03-29 09:33 1.4K chrUn_chainGasAcu1Link.txt.gz 2007-03-29 09:35 99M blastHg17KG.sql 2013-10-01 12:48 1.3K chrUn_blatHg16.sql 2013-10-01 12:48 1.3K chrUn_chainHg18.sql 2013-10-01 12:48 852 chrUn_chainHg18Link.sql 2013-10-01 12:48 575 chrUn_chainMm8.sql 2013-10-01 12:48 808 chrUn_chainMm8Link.sql 2013-10-01 12:48 573 chrUn_gap.sql 2013-10-01 12:48 704 chrUn_gold.sql 2013-10-01 12:48 781 chrUn_rmsk.sql 2013-10-01 12:48 1.0K chromInfo.sql 2013-10-01 12:48 394 cpgIsland.sql 2013-10-01 12:48 706 ecoresHg16.sql 2013-10-01 12:48 944 ecoresRn3.sql 2013-10-01 12:48 942 ensGene.sql 2013-10-01 12:48 740 ensGtp.sql 2013-10-01 12:48 436 ensPep.sql 2013-10-01 12:48 320 extFile.sql 2013-10-01 12:48 443 gbDelete_tmp.sql 2013-10-01 12:48 322 gcPercent.sql 2013-10-01 12:48 544 genscan.sql 2013-10-01 12:48 740 genscanPep.sql 2013-10-01 12:48 328 history.sql 2013-10-01 12:48 499 netHg18.sql 2013-10-01 12:48 1.3K netMm8.sql 2013-10-01 12:48 1.3K seq.sql 2013-10-01 12:48 588 simpleRepeat.sql 2013-10-01 12:48 1.1K grp.sql 2014-03-02 03:40 1.4K grp.txt.gz 2014-03-02 03:40 223 augustusGene.sql 2015-07-26 13:30 1.9K augustusGene.txt.gz 2015-07-26 13:30 2.6M microsat.sql 2015-08-23 16:25 1.5K microsat.txt.gz 2015-08-23 16:25 136K chrUn_est.sql 2019-03-17 09:24 2.1K chrUn_est.txt.gz 2019-03-17 09:24 14M chrUn_intronEst.sql 2019-03-17 09:24 2.1K chrUn_intronEst.txt.gz 2019-03-17 09:24 7.6M estOrientInfo.sql 2019-03-17 09:24 1.8K all_est.sql 2019-03-17 09:24 2.1K estOrientInfo.txt.gz 2019-03-17 09:24 3.3M all_est.txt.gz 2019-03-17 09:24 14M all_mrna.sql 2020-05-08 00:49 2.1K chrUn_mrna.sql 2020-05-08 00:49 2.1K mrnaOrientInfo.sql 2020-05-08 00:49 1.8K all_mrna.txt.gz 2020-05-08 00:49 77K chrUn_mrna.txt.gz 2020-05-08 00:49 77K mrnaOrientInfo.txt.gz 2020-05-08 00:49 19K gbLoaded.sql 2020-08-21 19:59 1.6K gbLoaded.txt.gz 2020-08-21 19:59 41K tableDescriptions.sql 2021-01-14 06:34 1.4K tableDescriptions.txt.gz 2021-01-14 06:34 5.6K trackDb.sql 2021-12-27 12:21 2.1K trackDb.txt.gz 2021-12-27 12:21 21K hgFindSpec.sql 2021-12-27 12:21 1.8K hgFindSpec.txt.gz 2021-12-27 12:21 689 tableList.sql 2022-08-07 03:09 1.6K tableList.txt.gz 2022-08-07 03:09 3.1K bigFiles.sql 2022-08-07 03:09 1.4K bigFiles.txt.gz 2022-08-07 03:09 33