This directory contains the v.3.0 draft assembly of the Fugu 
rubripes genome (fr1, Aug. 2002) provided by the US DOE Joint
Genome Institute (JGI). The annotations are from UCSC and collaborators 
worldwide.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=fr1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, 
then go to the directory goldenPath/fr1/database/. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely usable for any purpose.

      Name                          Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2024-02-18 03:28 33 bigFiles.sql 2024-02-18 03:28 1.4K tableList.txt.gz 2024-02-18 03:28 3.3K tableList.sql 2024-02-18 03:28 1.6K tableDescriptions.txt.gz 2024-02-17 02:03 5.6K tableDescriptions.sql 2024-02-17 02:03 1.4K hgFindSpec.txt.gz 2023-03-28 13:49 738 hgFindSpec.sql 2023-03-28 13:49 1.8K trackDb.txt.gz 2023-03-28 13:49 21K trackDb.sql 2023-03-28 13:49 2.1K hgFindSpec_pushedout.txt.gz 2021-12-27 12:21 699 hgFindSpec_pushedout.sql 2021-12-27 12:21 1.8K trackDb_pushedout.txt.gz 2021-12-27 12:21 21K trackDb_pushedout.sql 2021-12-27 12:21 2.1K gbLoaded.txt.gz 2020-08-21 19:59 41K gbLoaded.sql 2020-08-21 19:59 1.6K mrnaOrientInfo.txt.gz 2020-05-08 00:49 19K mrnaOrientInfo.sql 2020-05-08 00:49 1.8K chrUn_mrna.txt.gz 2020-05-08 00:49 77K chrUn_mrna.sql 2020-05-08 00:49 2.1K all_mrna.txt.gz 2020-05-08 00:49 77K all_mrna.sql 2020-05-08 00:49 2.1K all_est.txt.gz 2019-03-17 09:24 14M estOrientInfo.txt.gz 2019-03-17 09:24 3.3M all_est.sql 2019-03-17 09:24 2.1K estOrientInfo.sql 2019-03-17 09:24 1.8K chrUn_intronEst.txt.gz 2019-03-17 09:24 7.6M chrUn_intronEst.sql 2019-03-17 09:24 2.1K chrUn_est.txt.gz 2019-03-17 09:24 14M chrUn_est.sql 2019-03-17 09:24 2.1K microsat.txt.gz 2015-08-23 16:25 136K microsat.sql 2015-08-23 16:25 1.5K augustusGene.txt.gz 2015-07-26 13:30 2.6M augustusGene.sql 2015-07-26 13:30 1.9K grp.txt.gz 2014-03-02 03:40 223 grp.sql 2014-03-02 03:40 1.4K simpleRepeat.sql 2013-10-01 12:48 1.1K seq.sql 2013-10-01 12:48 588 netMm8.sql 2013-10-01 12:48 1.3K netHg18.sql 2013-10-01 12:48 1.3K history.sql 2013-10-01 12:48 499 genscanPep.sql 2013-10-01 12:48 328 genscan.sql 2013-10-01 12:48 740 gcPercent.sql 2013-10-01 12:48 544 gbDelete_tmp.sql 2013-10-01 12:48 322 extFile.sql 2013-10-01 12:48 443 ensPep.sql 2013-10-01 12:48 320 ensGtp.sql 2013-10-01 12:48 436 ensGene.sql 2013-10-01 12:48 740 ecoresRn3.sql 2013-10-01 12:48 942 ecoresHg16.sql 2013-10-01 12:48 944 cpgIsland.sql 2013-10-01 12:48 706 chromInfo.sql 2013-10-01 12:48 394 chrUn_rmsk.sql 2013-10-01 12:48 1.0K chrUn_gold.sql 2013-10-01 12:48 781 chrUn_gap.sql 2013-10-01 12:48 704 chrUn_chainMm8Link.sql 2013-10-01 12:48 573 chrUn_chainMm8.sql 2013-10-01 12:48 808 chrUn_chainHg18Link.sql 2013-10-01 12:48 575 chrUn_chainHg18.sql 2013-10-01 12:48 852 chrUn_blatHg16.sql 2013-10-01 12:48 1.3K blastHg17KG.sql 2013-10-01 12:48 1.3K chrUn_chainGasAcu1Link.txt.gz 2007-03-29 09:35 99M chrUn_chainGasAcu1Link.sql 2007-03-29 09:33 1.4K chrUn_chainGasAcu1.txt.gz 2007-03-29 09:33 11M chrUn_chainGasAcu1.sql 2007-03-29 09:33 1.7K netGasAcu1.txt.gz 2007-03-29 09:33 10M netGasAcu1.sql 2007-03-29 09:32 2.2K genomicSuperDups.txt.gz 2006-07-05 07:02 5.4M genomicSuperDups.sql 2006-07-05 07:02 2.5K netDanRer4.txt.gz 2006-05-29 02:37 9.1M netDanRer4.sql 2006-05-29 02:37 2.2K chrUn_chainDanRer4Link.txt.gz 2006-05-29 02:30 103M chrUn_chainDanRer4Link.sql 2006-05-29 02:26 1.4K chrUn_chainDanRer4.txt.gz 2006-05-29 02:26 17M chrUn_chainDanRer4.sql 2006-05-29 02:25 1.6K netMm8.txt.gz 2006-04-28 03:43 4.8M chrUn_chainMm8.txt.gz 2006-04-28 03:42 6.1M chrUn_chainMm8Link.txt.gz 2006-04-28 03:42 34M netHg18.txt.gz 2006-04-16 07:22 4.9M chrUn_chainHg18Link.txt.gz 2006-04-16 07:21 54M chrUn_chainHg18.txt.gz 2006-04-16 07:20 12M gbDelete_tmp.txt.gz 2005-09-27 05:01 180K blastHg17KG.txt.gz 2005-05-14 05:58 3.2M ecoresRn3.txt.gz 2004-06-10 09:51 1.0M ecoresHg16.txt.gz 2004-06-10 09:51 1.0M ensPep.txt.gz 2003-11-18 10:11 4.9M ensGtp.txt.gz 2003-11-18 10:11 273K seq.txt.gz 2003-11-18 10:10 28 extFile.txt.gz 2003-11-18 10:10 32 chrUn_gap.txt.gz 2003-09-30 06:53 476K simpleRepeat.txt.gz 2003-09-24 11:07 2.0M history.txt.gz 2003-09-24 11:07 263 genscanPep.txt.gz 2003-09-24 11:07 8.6M genscan.txt.gz 2003-09-24 11:07 2.1M gcPercent.txt.gz 2003-09-24 11:07 108K ensGene.txt.gz 2003-09-24 11:07 1.6M cpgIsland.txt.gz 2003-09-24 11:07 754K chromInfo.txt.gz 2003-09-24 11:07 70 chrUn_rmsk.txt.gz 2003-09-24 11:07 3.8M chrUn_gold.txt.gz 2003-09-24 11:07 326K chrUn_blatHg16.txt.gz 2003-09-24 11:07 13M