This directory contains the v.3.0 draft assembly of the Fugu
rubripes genome (fr1, Aug. 2002) provided by the US DOE Joint
Genome Institute (JGI). The annotations are from UCSC and collaborators
worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=fr1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/fr1/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
chrUn_blatHg16.txt.gz 2003-09-24 11:07 13M
chrUn_gold.txt.gz 2003-09-24 11:07 326K
chrUn_rmsk.txt.gz 2003-09-24 11:07 3.8M
chromInfo.txt.gz 2003-09-24 11:07 70
cpgIsland.txt.gz 2003-09-24 11:07 754K
ensGene.txt.gz 2003-09-24 11:07 1.6M
gcPercent.txt.gz 2003-09-24 11:07 108K
genscan.txt.gz 2003-09-24 11:07 2.1M
genscanPep.txt.gz 2003-09-24 11:07 8.6M
history.txt.gz 2003-09-24 11:07 263
simpleRepeat.txt.gz 2003-09-24 11:07 2.0M
chrUn_gap.txt.gz 2003-09-30 06:53 476K
extFile.txt.gz 2003-11-18 10:10 32
seq.txt.gz 2003-11-18 10:10 28
ensGtp.txt.gz 2003-11-18 10:11 273K
ensPep.txt.gz 2003-11-18 10:11 4.9M
ecoresHg16.txt.gz 2004-06-10 09:51 1.0M
ecoresRn3.txt.gz 2004-06-10 09:51 1.0M
blastHg17KG.txt.gz 2005-05-14 05:58 3.2M
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
chrUn_chainHg18.txt.gz 2006-04-16 07:20 12M
chrUn_chainHg18Link.txt.gz 2006-04-16 07:21 54M
netHg18.txt.gz 2006-04-16 07:22 4.9M
chrUn_chainMm8Link.txt.gz 2006-04-28 03:42 34M
chrUn_chainMm8.txt.gz 2006-04-28 03:42 6.1M
netMm8.txt.gz 2006-04-28 03:43 4.8M
chrUn_chainDanRer4.sql 2006-05-29 02:25 1.6K
chrUn_chainDanRer4.txt.gz 2006-05-29 02:26 17M
chrUn_chainDanRer4Link.sql 2006-05-29 02:26 1.4K
chrUn_chainDanRer4Link.txt.gz 2006-05-29 02:30 103M
netDanRer4.sql 2006-05-29 02:37 2.2K
netDanRer4.txt.gz 2006-05-29 02:37 9.1M
genomicSuperDups.sql 2006-07-05 07:02 2.5K
genomicSuperDups.txt.gz 2006-07-05 07:02 5.4M
netGasAcu1.sql 2007-03-29 09:32 2.2K
netGasAcu1.txt.gz 2007-03-29 09:33 10M
chrUn_chainGasAcu1.sql 2007-03-29 09:33 1.7K
chrUn_chainGasAcu1.txt.gz 2007-03-29 09:33 11M
chrUn_chainGasAcu1Link.sql 2007-03-29 09:33 1.4K
chrUn_chainGasAcu1Link.txt.gz 2007-03-29 09:35 99M
blastHg17KG.sql 2013-10-01 12:48 1.3K
chrUn_blatHg16.sql 2013-10-01 12:48 1.3K
chrUn_chainHg18.sql 2013-10-01 12:48 852
chrUn_chainHg18Link.sql 2013-10-01 12:48 575
chrUn_chainMm8.sql 2013-10-01 12:48 808
chrUn_chainMm8Link.sql 2013-10-01 12:48 573
chrUn_gap.sql 2013-10-01 12:48 704
chrUn_gold.sql 2013-10-01 12:48 781
chrUn_rmsk.sql 2013-10-01 12:48 1.0K
chromInfo.sql 2013-10-01 12:48 394
cpgIsland.sql 2013-10-01 12:48 706
ecoresHg16.sql 2013-10-01 12:48 944
ecoresRn3.sql 2013-10-01 12:48 942
ensGene.sql 2013-10-01 12:48 740
ensGtp.sql 2013-10-01 12:48 436
ensPep.sql 2013-10-01 12:48 320
extFile.sql 2013-10-01 12:48 443
gbDelete_tmp.sql 2013-10-01 12:48 322
gcPercent.sql 2013-10-01 12:48 544
genscan.sql 2013-10-01 12:48 740
genscanPep.sql 2013-10-01 12:48 328
history.sql 2013-10-01 12:48 499
netHg18.sql 2013-10-01 12:48 1.3K
netMm8.sql 2013-10-01 12:48 1.3K
seq.sql 2013-10-01 12:48 588
simpleRepeat.sql 2013-10-01 12:48 1.1K
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 223
augustusGene.sql 2015-07-26 13:30 1.9K
augustusGene.txt.gz 2015-07-26 13:30 2.6M
microsat.sql 2015-08-23 16:25 1.5K
microsat.txt.gz 2015-08-23 16:25 136K
chrUn_est.sql 2019-03-17 09:24 2.1K
chrUn_est.txt.gz 2019-03-17 09:24 14M
chrUn_intronEst.sql 2019-03-17 09:24 2.1K
chrUn_intronEst.txt.gz 2019-03-17 09:24 7.6M
estOrientInfo.sql 2019-03-17 09:24 1.8K
all_est.sql 2019-03-17 09:24 2.1K
estOrientInfo.txt.gz 2019-03-17 09:24 3.3M
all_est.txt.gz 2019-03-17 09:24 14M
all_mrna.sql 2020-05-08 00:49 2.1K
all_mrna.txt.gz 2020-05-08 00:49 77K
chrUn_mrna.sql 2020-05-08 00:49 2.1K
chrUn_mrna.txt.gz 2020-05-08 00:49 77K
mrnaOrientInfo.sql 2020-05-08 00:49 1.8K
mrnaOrientInfo.txt.gz 2020-05-08 00:49 19K
gbLoaded.sql 2020-08-21 19:59 1.6K
gbLoaded.txt.gz 2020-08-21 19:59 41K
trackDb.sql 2024-03-02 15:18 2.1K
trackDb.txt.gz 2024-03-02 15:18 21K
hgFindSpec.sql 2024-03-02 15:18 1.8K
hgFindSpec.txt.gz 2024-03-02 15:18 747
tableDescriptions.sql 2025-10-25 08:46 1.5K
tableDescriptions.txt.gz 2025-10-25 08:46 5.6K
tableList.sql 2025-10-26 03:33 1.6K
tableList.txt.gz 2025-10-26 03:33 3.1K
bigFiles.sql 2025-10-26 03:33 1.4K
bigFiles.txt.gz 2025-10-26 03:33 33