This directory contains a dump of the UCSC genome annotation database for the Dec. 2002 v.1.0 assembly (UCSC version ci1) of the C. intestinalis genome from the US DOE Joint Genome Institute (JGI). Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=ci1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. ---------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/ci1/database. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the annotations in this directory are freely available for public use. To view restrictions on the use of the v1.0 data, see the JGI data release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
Name Last modified Size Description
Parent Directory - bigFiles.txt.gz 2024-12-08 03:27 33 extFile.txt.gz 2004-07-15 15:41 115 grp.txt.gz 2014-03-02 03:40 223 jgiPep.sql 2013-10-01 12:48 318 gbDelete_tmp.sql 2013-10-01 12:48 322 chromInfo.sql 2013-10-01 12:48 392 extFile.sql 2013-10-01 12:48 441 history.sql 2013-10-01 12:48 533 seq.sql 2013-10-01 12:48 586 hgFindSpec.txt.gz 2023-03-28 13:47 699 gap.sql 2013-10-01 12:48 704 gc5Base.sql 2013-10-01 12:48 887 history.txt.gz 2004-07-15 15:42 934 jgiGene.sql 2013-10-01 12:48 1.0K rmsk.sql 2013-10-01 12:48 1.0K snapGene.sql 2013-10-01 12:48 1.0K simpleRepeat.sql 2013-10-01 12:48 1.1K blastHg16KG.sql 2013-10-01 12:48 1.3K grp.sql 2014-03-02 03:40 1.4K blatCioSav1.sql 2013-10-01 12:48 1.4K bigFiles.sql 2024-12-08 03:27 1.4K chromAlias.sql 2016-09-15 17:56 1.4K tableDescriptions.sql 2024-12-07 02:03 1.5K microsat.sql 2015-08-23 12:42 1.5K tableList.sql 2024-12-08 03:27 1.6K microsat.txt.gz 2015-08-23 12:42 1.6K gbLoaded.sql 2020-08-21 06:59 1.7K hgFindSpec.sql 2023-03-28 13:47 1.8K refGene.sql 2020-08-21 06:44 1.8K xenoRefGene.sql 2020-08-21 06:59 1.8K refFlat.sql 2020-08-21 06:44 1.9K xenoRefFlat.sql 2020-08-21 06:59 1.9K estOrientInfo.sql 2016-06-05 09:30 1.9K mrnaOrientInfo.sql 2020-08-21 06:44 1.9K trackDb.sql 2023-03-28 13:47 2.1K tableList.txt.gz 2024-12-08 03:27 2.3K all_mrna.sql 2020-08-21 06:44 2.4K xenoMrna.sql 2020-08-21 06:44 2.4K all_est.sql 2016-06-05 09:29 2.4K intronEst.sql 2016-06-05 09:29 2.4K refSeqAli.sql 2019-07-28 04:38 2.4K xenoRefSeqAli.sql 2020-08-21 06:59 2.4K tableDescriptions.txt.gz 2024-12-07 02:03 4.4K trackDb.txt.gz 2023-03-28 13:47 10K chromAlias.txt.gz 2016-09-15 17:56 12K chromInfo.txt.gz 2004-07-15 15:40 21K gap.txt.gz 2004-07-15 15:41 61K refGene.txt.gz 2020-08-21 06:44 72K refFlat.txt.gz 2020-08-21 06:44 78K refSeqAli.txt.gz 2019-07-28 04:38 95K mrnaOrientInfo.txt.gz 2020-08-21 06:44 139K gbDelete_tmp.txt.gz 2005-09-27 05:01 180K gbLoaded.txt.gz 2020-08-21 06:59 224K seq.txt.gz 2004-07-15 15:44 490K gc5Base.txt.gz 2004-07-15 15:42 607K all_mrna.txt.gz 2020-08-21 06:44 675K simpleRepeat.txt.gz 2004-07-15 15:44 790K jgiGene.txt.gz 2004-07-15 15:42 1.0M blastHg16KG.txt.gz 2004-09-28 10:06 2.0M snapGene.txt.gz 2004-07-15 15:44 2.0M rmsk.txt.gz 2004-07-15 15:44 3.2M jgiPep.txt.gz 2004-07-15 15:43 3.5M xenoRefGene.txt.gz 2020-08-21 06:59 7.8M xenoRefFlat.txt.gz 2020-08-21 06:59 9.1M blatCioSav1.txt.gz 2004-07-15 15:40 9.2M xenoRefSeqAli.txt.gz 2020-08-21 06:59 11M estOrientInfo.txt.gz 2016-06-05 09:30 12M intronEst.txt.gz 2016-06-05 09:29 27M all_est.txt.gz 2016-06-05 09:29 42M xenoMrna.txt.gz 2020-08-21 06:44 111M