This directory contains a dump of the UCSC genome annotation 
database for the Dec. 2002 v.1.0 assembly (UCSC version ci1) 
of the C. intestinalis genome from the US DOE Joint Genome 
Institute (JGI). 

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=ci1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/ci1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely available for public use.

To view restrictions on the use of the v1.0 data, see the JGI data 
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
      Name                     Last modified      Size  Description
Parent Directory - blatCioSav1.txt.gz 2004-07-15 15:40 9.2M chromInfo.txt.gz 2004-07-15 15:40 21K extFile.txt.gz 2004-07-15 15:41 115 gap.txt.gz 2004-07-15 15:41 61K gc5Base.txt.gz 2004-07-15 15:42 607K history.txt.gz 2004-07-15 15:42 934 jgiGene.txt.gz 2004-07-15 15:42 1.0M jgiPep.txt.gz 2004-07-15 15:43 3.5M rmsk.txt.gz 2004-07-15 15:44 3.2M seq.txt.gz 2004-07-15 15:44 490K simpleRepeat.txt.gz 2004-07-15 15:44 790K snapGene.txt.gz 2004-07-15 15:44 2.0M blastHg16KG.txt.gz 2004-09-28 10:06 2.0M gbDelete_tmp.txt.gz 2005-09-27 05:01 180K blastHg16KG.sql 2013-10-01 12:48 1.3K blatCioSav1.sql 2013-10-01 12:48 1.4K chromInfo.sql 2013-10-01 12:48 392 extFile.sql 2013-10-01 12:48 441 gap.sql 2013-10-01 12:48 704 gbDelete_tmp.sql 2013-10-01 12:48 322 gc5Base.sql 2013-10-01 12:48 887 history.sql 2013-10-01 12:48 533 jgiGene.sql 2013-10-01 12:48 1.0K jgiPep.sql 2013-10-01 12:48 318 rmsk.sql 2013-10-01 12:48 1.0K seq.sql 2013-10-01 12:48 586 simpleRepeat.sql 2013-10-01 12:48 1.1K snapGene.sql 2013-10-01 12:48 1.0K grp.sql 2014-03-02 03:40 1.4K grp.txt.gz 2014-03-02 03:40 223 microsat.sql 2015-08-23 12:42 1.5K microsat.txt.gz 2015-08-23 12:42 1.6K intronEst.sql 2016-06-05 09:29 2.4K intronEst.txt.gz 2016-06-05 09:29 27M all_est.sql 2016-06-05 09:29 2.4K all_est.txt.gz 2016-06-05 09:29 42M estOrientInfo.sql 2016-06-05 09:30 1.9K estOrientInfo.txt.gz 2016-06-05 09:30 12M chromAlias.sql 2016-09-15 17:56 1.4K chromAlias.txt.gz 2016-09-15 17:56 12K refSeqAli.sql 2019-07-28 04:38 2.4K refSeqAli.txt.gz 2019-07-28 04:38 95K all_mrna.sql 2020-08-21 06:44 2.4K mrnaOrientInfo.sql 2020-08-21 06:44 1.9K xenoMrna.sql 2020-08-21 06:44 2.4K all_mrna.txt.gz 2020-08-21 06:44 675K xenoMrna.txt.gz 2020-08-21 06:44 111M mrnaOrientInfo.txt.gz 2020-08-21 06:44 139K refFlat.sql 2020-08-21 06:44 1.9K refGene.sql 2020-08-21 06:44 1.8K refGene.txt.gz 2020-08-21 06:44 72K refFlat.txt.gz 2020-08-21 06:44 78K xenoRefGene.sql 2020-08-21 06:59 1.8K xenoRefGene.txt.gz 2020-08-21 06:59 7.8M xenoRefFlat.sql 2020-08-21 06:59 1.9K xenoRefFlat.txt.gz 2020-08-21 06:59 9.1M xenoRefSeqAli.sql 2020-08-21 06:59 2.4K xenoRefSeqAli.txt.gz 2020-08-21 06:59 11M gbLoaded.sql 2020-08-21 06:59 1.7K gbLoaded.txt.gz 2020-08-21 06:59 224K tableDescriptions.sql 2020-10-10 02:03 1.4K tableDescriptions.txt.gz 2020-10-10 02:03 4.4K trackDb.sql 2021-08-02 14:24 2.1K trackDb.txt.gz 2021-08-02 14:24 10K hgFindSpec.sql 2021-08-02 14:24 1.8K hgFindSpec.txt.gz 2021-08-02 14:24 647 tableList.sql 2022-11-27 03:08 1.6K tableList.txt.gz 2022-11-27 03:08 2.2K bigFiles.sql 2022-11-27 03:08 1.4K bigFiles.txt.gz 2022-11-27 03:08 33