This directory contains a dump of the UCSC genome annotation
database for the Dec. 2002 v.1.0 assembly (UCSC version ci1)
of the C. intestinalis genome from the US DOE Joint Genome
Institute (JGI).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ci1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ci1/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
To view restrictions on the use of the v1.0 data, see the JGI data
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
Name Last modified Size Description
Parent Directory -
xenoMrna.txt.gz 2020-08-21 06:44 111M
all_est.txt.gz 2016-06-05 09:29 42M
intronEst.txt.gz 2016-06-05 09:29 27M
estOrientInfo.txt.gz 2016-06-05 09:30 12M
xenoRefSeqAli.txt.gz 2020-08-21 06:59 11M
blatCioSav1.txt.gz 2004-07-15 15:40 9.2M
xenoRefFlat.txt.gz 2020-08-21 06:59 9.1M
xenoRefGene.txt.gz 2020-08-21 06:59 7.8M
jgiPep.txt.gz 2004-07-15 15:43 3.5M
rmsk.txt.gz 2004-07-15 15:44 3.2M
snapGene.txt.gz 2004-07-15 15:44 2.0M
blastHg16KG.txt.gz 2004-09-28 10:06 2.0M
jgiGene.txt.gz 2004-07-15 15:42 1.0M
simpleRepeat.txt.gz 2004-07-15 15:44 790K
all_mrna.txt.gz 2020-08-21 06:44 675K
gc5Base.txt.gz 2004-07-15 15:42 607K
seq.txt.gz 2004-07-15 15:44 490K
gbLoaded.txt.gz 2020-08-21 06:59 224K
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
mrnaOrientInfo.txt.gz 2020-08-21 06:44 139K
refSeqAli.txt.gz 2019-07-28 04:38 95K
refFlat.txt.gz 2020-08-21 06:44 78K
refGene.txt.gz 2020-08-21 06:44 72K
gap.txt.gz 2004-07-15 15:41 61K
chromInfo.txt.gz 2004-07-15 15:40 21K
chromAlias.txt.gz 2016-09-15 17:56 12K
trackDb.txt.gz 2023-03-28 13:47 10K
trackDb_pushedout.txt.gz 2021-08-02 14:24 10K
tableDescriptions.txt.gz 2024-04-20 02:03 4.4K
tableList.txt.gz 2024-04-21 03:29 2.4K
xenoRefSeqAli.sql 2020-08-21 06:59 2.4K
refSeqAli.sql 2019-07-28 04:38 2.4K
intronEst.sql 2016-06-05 09:29 2.4K
all_est.sql 2016-06-05 09:29 2.4K
xenoMrna.sql 2020-08-21 06:44 2.4K
all_mrna.sql 2020-08-21 06:44 2.4K
trackDb_pushedout.sql 2021-08-02 14:24 2.1K
trackDb.sql 2023-03-28 13:47 2.1K
mrnaOrientInfo.sql 2020-08-21 06:44 1.9K
estOrientInfo.sql 2016-06-05 09:30 1.9K
xenoRefFlat.sql 2020-08-21 06:59 1.9K
refFlat.sql 2020-08-21 06:44 1.9K
xenoRefGene.sql 2020-08-21 06:59 1.8K
refGene.sql 2020-08-21 06:44 1.8K
hgFindSpec_pushedout.sql 2021-08-02 14:24 1.8K
hgFindSpec.sql 2023-03-28 13:47 1.8K
gbLoaded.sql 2020-08-21 06:59 1.7K
microsat.txt.gz 2015-08-23 12:42 1.6K
tableList.sql 2024-04-21 03:29 1.6K
microsat.sql 2015-08-23 12:42 1.5K
tableDescriptions.sql 2024-04-20 02:03 1.5K
chromAlias.sql 2016-09-15 17:56 1.4K
bigFiles.sql 2024-04-21 03:29 1.4K
blatCioSav1.sql 2013-10-01 12:48 1.4K
grp.sql 2014-03-02 03:40 1.4K
blastHg16KG.sql 2013-10-01 12:48 1.3K
simpleRepeat.sql 2013-10-01 12:48 1.1K
snapGene.sql 2013-10-01 12:48 1.0K
rmsk.sql 2013-10-01 12:48 1.0K
jgiGene.sql 2013-10-01 12:48 1.0K
history.txt.gz 2004-07-15 15:42 934
gc5Base.sql 2013-10-01 12:48 887
gap.sql 2013-10-01 12:48 704
hgFindSpec.txt.gz 2023-03-28 13:47 699
hgFindSpec_pushedout.txt.gz 2021-08-02 14:24 657
seq.sql 2013-10-01 12:48 586
history.sql 2013-10-01 12:48 533
extFile.sql 2013-10-01 12:48 441
chromInfo.sql 2013-10-01 12:48 392
gbDelete_tmp.sql 2013-10-01 12:48 322
jgiPep.sql 2013-10-01 12:48 318
grp.txt.gz 2014-03-02 03:40 223
extFile.txt.gz 2004-07-15 15:41 115
bigFiles.txt.gz 2024-04-21 03:29 33