This directory contains a dump of the UCSC genome annotation 
database for the Dec. 2002 v.1.0 assembly (UCSC version ci1) 
of the C. intestinalis genome from the US DOE Joint Genome 
Institute (JGI). 

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=ci1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/ci1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely available for public use.

To view restrictions on the use of the v1.0 data, see the JGI data 
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
      Name                     Last modified      Size  Description
Parent Directory - tableList.txt.gz 2022-10-02 03:09 2.2K tableList.sql 2022-10-02 03:09 1.6K bigFiles.txt.gz 2022-10-02 03:09 33 bigFiles.sql 2022-10-02 03:09 1.4K hgFindSpec.txt.gz 2021-08-02 14:24 647 hgFindSpec.sql 2021-08-02 14:24 1.8K trackDb.txt.gz 2021-08-02 14:24 10K trackDb.sql 2021-08-02 14:24 2.1K tableDescriptions.txt.gz 2020-10-10 02:03 4.4K tableDescriptions.sql 2020-10-10 02:03 1.4K gbLoaded.txt.gz 2020-08-21 06:59 224K gbLoaded.sql 2020-08-21 06:59 1.7K xenoRefSeqAli.txt.gz 2020-08-21 06:59 11M xenoRefSeqAli.sql 2020-08-21 06:59 2.4K xenoRefFlat.txt.gz 2020-08-21 06:59 9.1M xenoRefFlat.sql 2020-08-21 06:59 1.9K xenoRefGene.txt.gz 2020-08-21 06:59 7.8M xenoRefGene.sql 2020-08-21 06:59 1.8K refFlat.txt.gz 2020-08-21 06:44 78K refGene.txt.gz 2020-08-21 06:44 72K refGene.sql 2020-08-21 06:44 1.8K refFlat.sql 2020-08-21 06:44 1.9K mrnaOrientInfo.txt.gz 2020-08-21 06:44 139K xenoMrna.txt.gz 2020-08-21 06:44 111M all_mrna.txt.gz 2020-08-21 06:44 675K xenoMrna.sql 2020-08-21 06:44 2.4K mrnaOrientInfo.sql 2020-08-21 06:44 1.9K all_mrna.sql 2020-08-21 06:44 2.4K refSeqAli.txt.gz 2019-07-28 04:38 95K refSeqAli.sql 2019-07-28 04:38 2.4K chromAlias.txt.gz 2016-09-15 17:56 12K chromAlias.sql 2016-09-15 17:56 1.4K estOrientInfo.txt.gz 2016-06-05 09:30 12M estOrientInfo.sql 2016-06-05 09:30 1.9K all_est.txt.gz 2016-06-05 09:29 42M all_est.sql 2016-06-05 09:29 2.4K intronEst.txt.gz 2016-06-05 09:29 27M intronEst.sql 2016-06-05 09:29 2.4K microsat.txt.gz 2015-08-23 12:42 1.6K microsat.sql 2015-08-23 12:42 1.5K grp.txt.gz 2014-03-02 03:40 223 grp.sql 2014-03-02 03:40 1.4K snapGene.sql 2013-10-01 12:48 1.0K simpleRepeat.sql 2013-10-01 12:48 1.1K seq.sql 2013-10-01 12:48 586 rmsk.sql 2013-10-01 12:48 1.0K jgiPep.sql 2013-10-01 12:48 318 jgiGene.sql 2013-10-01 12:48 1.0K history.sql 2013-10-01 12:48 533 gc5Base.sql 2013-10-01 12:48 887 gbDelete_tmp.sql 2013-10-01 12:48 322 gap.sql 2013-10-01 12:48 704 extFile.sql 2013-10-01 12:48 441 chromInfo.sql 2013-10-01 12:48 392 blatCioSav1.sql 2013-10-01 12:48 1.4K blastHg16KG.sql 2013-10-01 12:48 1.3K gbDelete_tmp.txt.gz 2005-09-27 05:01 180K blastHg16KG.txt.gz 2004-09-28 10:06 2.0M snapGene.txt.gz 2004-07-15 15:44 2.0M simpleRepeat.txt.gz 2004-07-15 15:44 790K seq.txt.gz 2004-07-15 15:44 490K rmsk.txt.gz 2004-07-15 15:44 3.2M jgiPep.txt.gz 2004-07-15 15:43 3.5M jgiGene.txt.gz 2004-07-15 15:42 1.0M history.txt.gz 2004-07-15 15:42 934 gc5Base.txt.gz 2004-07-15 15:42 607K gap.txt.gz 2004-07-15 15:41 61K extFile.txt.gz 2004-07-15 15:41 115 chromInfo.txt.gz 2004-07-15 15:40 21K blatCioSav1.txt.gz 2004-07-15 15:40 9.2M