This directory contains a dump of the UCSC genome annotation
database for the Dec. 2002 v.1.0 assembly (UCSC version ci1)
of the C. intestinalis genome from the US DOE Joint Genome
Institute (JGI).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ci1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ci1/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
To view restrictions on the use of the v1.0 data, see the JGI data
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-04-21 03:29 33
bigFiles.sql 2024-04-21 03:29 1.4K
tableList.txt.gz 2024-04-21 03:29 2.4K
tableList.sql 2024-04-21 03:29 1.6K
tableDescriptions.txt.gz 2024-04-20 02:03 4.4K
tableDescriptions.sql 2024-04-20 02:03 1.5K
hgFindSpec.txt.gz 2023-03-28 13:47 699
hgFindSpec.sql 2023-03-28 13:47 1.8K
trackDb.txt.gz 2023-03-28 13:47 10K
trackDb.sql 2023-03-28 13:47 2.1K
hgFindSpec_pushedout.txt.gz 2021-08-02 14:24 657
hgFindSpec_pushedout.sql 2021-08-02 14:24 1.8K
trackDb_pushedout.txt.gz 2021-08-02 14:24 10K
trackDb_pushedout.sql 2021-08-02 14:24 2.1K
gbLoaded.txt.gz 2020-08-21 06:59 224K
gbLoaded.sql 2020-08-21 06:59 1.7K
xenoRefSeqAli.txt.gz 2020-08-21 06:59 11M
xenoRefSeqAli.sql 2020-08-21 06:59 2.4K
xenoRefFlat.txt.gz 2020-08-21 06:59 9.1M
xenoRefFlat.sql 2020-08-21 06:59 1.9K
xenoRefGene.txt.gz 2020-08-21 06:59 7.8M
xenoRefGene.sql 2020-08-21 06:59 1.8K
refFlat.txt.gz 2020-08-21 06:44 78K
refFlat.sql 2020-08-21 06:44 1.9K
refGene.txt.gz 2020-08-21 06:44 72K
refGene.sql 2020-08-21 06:44 1.8K
mrnaOrientInfo.txt.gz 2020-08-21 06:44 139K
mrnaOrientInfo.sql 2020-08-21 06:44 1.9K
xenoMrna.txt.gz 2020-08-21 06:44 111M
xenoMrna.sql 2020-08-21 06:44 2.4K
all_mrna.txt.gz 2020-08-21 06:44 675K
all_mrna.sql 2020-08-21 06:44 2.4K
refSeqAli.txt.gz 2019-07-28 04:38 95K
refSeqAli.sql 2019-07-28 04:38 2.4K
chromAlias.txt.gz 2016-09-15 17:56 12K
chromAlias.sql 2016-09-15 17:56 1.4K
estOrientInfo.txt.gz 2016-06-05 09:30 12M
estOrientInfo.sql 2016-06-05 09:30 1.9K
all_est.txt.gz 2016-06-05 09:29 42M
all_est.sql 2016-06-05 09:29 2.4K
intronEst.txt.gz 2016-06-05 09:29 27M
intronEst.sql 2016-06-05 09:29 2.4K
microsat.txt.gz 2015-08-23 12:42 1.6K
microsat.sql 2015-08-23 12:42 1.5K
grp.txt.gz 2014-03-02 03:40 223
grp.sql 2014-03-02 03:40 1.4K
snapGene.sql 2013-10-01 12:48 1.0K
simpleRepeat.sql 2013-10-01 12:48 1.1K
seq.sql 2013-10-01 12:48 586
rmsk.sql 2013-10-01 12:48 1.0K
jgiPep.sql 2013-10-01 12:48 318
jgiGene.sql 2013-10-01 12:48 1.0K
history.sql 2013-10-01 12:48 533
gc5Base.sql 2013-10-01 12:48 887
gbDelete_tmp.sql 2013-10-01 12:48 322
gap.sql 2013-10-01 12:48 704
extFile.sql 2013-10-01 12:48 441
chromInfo.sql 2013-10-01 12:48 392
blatCioSav1.sql 2013-10-01 12:48 1.4K
blastHg16KG.sql 2013-10-01 12:48 1.3K
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
blastHg16KG.txt.gz 2004-09-28 10:06 2.0M
snapGene.txt.gz 2004-07-15 15:44 2.0M
simpleRepeat.txt.gz 2004-07-15 15:44 790K
seq.txt.gz 2004-07-15 15:44 490K
rmsk.txt.gz 2004-07-15 15:44 3.2M
jgiPep.txt.gz 2004-07-15 15:43 3.5M
jgiGene.txt.gz 2004-07-15 15:42 1.0M
history.txt.gz 2004-07-15 15:42 934
gc5Base.txt.gz 2004-07-15 15:42 607K
gap.txt.gz 2004-07-15 15:41 61K
extFile.txt.gz 2004-07-15 15:41 115
chromInfo.txt.gz 2004-07-15 15:40 21K
blatCioSav1.txt.gz 2004-07-15 15:40 9.2M