This directory contains a dump of the UCSC genome annotation database 
for the Mar. 2005 cow genome assembled by the Baylor College of Medicine 
Human Genome Sequencing Center (bosTau2 BCM HGSC Btau_2.0). For more 
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau2
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website. 
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/bosTau2/database/. To download multiple files, use the 
"mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.

      Name                        Last modified      Size  Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-08-20 22:45 45M xenoRefSeqAli.sql 2020-08-20 22:45 2.4K xenoRefGene.txt.gz 2020-08-20 22:45 35M xenoRefGene.sql 2020-08-20 22:45 1.8K xenoRefFlat.txt.gz 2020-08-20 22:45 37M xenoRefFlat.sql 2020-08-20 22:45 1.9K xenoMrna.txt.gz 2013-11-03 07:21 33 xenoMrna.sql 2013-11-03 07:21 2.1K trackDb.txt.gz 2021-08-02 14:26 26K trackDb.sql 2021-08-02 14:26 2.1K tableList.txt.gz 2022-11-27 03:08 3.2K tableList.sql 2022-11-27 03:08 1.6K tableDescriptions.txt.gz 2020-03-01 04:51 5.0K tableDescriptions.sql 2020-03-01 04:51 1.4K simpleRepeat.txt.gz 2005-10-05 09:14 10M simpleRepeat.sql 2013-10-01 12:48 1.0K sgpGene.txt.gz 2005-12-31 06:16 2.4M sgpGene.sql 2013-10-01 12:48 1.0K rmsk.txt.gz 2005-10-05 09:11 140M rmsk.sql 2013-10-01 12:48 1.0K refSeqAli.txt.gz 2020-08-20 22:45 1.6M refSeqAli.sql 2020-08-20 22:45 2.3K refGene.txt.gz 2020-08-20 22:45 1.6M refGene.sql 2020-08-20 22:45 2.2K refFlat.txt.gz 2020-08-20 22:45 1.4M refFlat.sql 2020-08-20 22:45 1.9K quality.txt.gz 2005-10-05 09:08 62M quality.sql 2013-10-01 12:48 892 netRn4.txt.gz 2006-06-21 06:47 52M netRn4.sql 2006-06-21 06:46 2.2K netMm8.txt.gz 2006-05-10 06:44 54M netMm8.sql 2013-10-01 12:48 1.3K netHg18.txt.gz 2006-04-16 06:34 69M netHg18.sql 2013-10-01 12:48 1.3K mrnaOrientInfo.txt.gz 2020-08-20 22:45 704K mrnaOrientInfo.sql 2020-08-20 22:45 1.9K mgcGenes.txt.gz 2020-03-01 04:51 822K mgcGenes.sql 2020-03-01 04:51 1.9K mgcFullMrna.txt.gz 2020-03-01 04:51 950K mgcFullMrna.sql 2020-03-01 04:51 2.3K intronEst.txt.gz 2016-06-05 08:59 33M intronEst.sql 2016-06-05 08:59 2.3K history.txt.gz 2005-10-05 09:06 279 history.sql 2013-10-01 12:48 537 hgFindSpec.txt.gz 2021-08-02 14:26 819 hgFindSpec.sql 2021-08-02 14:26 1.8K grp.txt.gz 2014-03-02 03:37 223 grp.sql 2014-03-02 03:37 1.4K gold.txt.gz 2005-10-05 09:06 11M gold.sql 2013-10-01 12:48 711 genscanPep.txt.gz 2005-10-05 09:05 11M genscanPep.sql 2013-10-01 12:48 330 genscan.txt.gz 2005-10-05 09:05 3.2M genscan.sql 2013-10-01 12:48 748 geneidPep.txt.gz 2005-10-28 05:23 7.9M geneidPep.sql 2013-10-01 12:48 328 geneid.txt.gz 2005-10-28 05:23 3.7M geneid.sql 2013-10-01 12:48 1.0K gc5Base.txt.gz 2005-10-05 09:05 14M gc5Base.sql 2013-10-01 12:48 891 gbLoaded.txt.gz 2020-08-20 22:45 207K gbLoaded.sql 2020-08-20 22:45 1.7K gap.txt.gz 2005-10-05 09:03 6.2M gap.sql 2013-10-01 12:48 634 estOrientInfo.txt.gz 2016-06-05 09:00 21M estOrientInfo.sql 2016-06-05 08:59 1.9K cpgIslandExtUnmasked.txt.gz 2014-06-01 08:19 2.1M cpgIslandExtUnmasked.sql 2014-06-01 08:19 1.7K cpgIslandExt.txt.gz 2005-10-05 09:03 2.0M cpgIslandExt.sql 2013-10-01 12:48 751 contigOrient.txt.gz 2005-10-05 09:03 1.5M contigOrient.sql 2013-10-01 12:48 686 chromInfo.txt.gz 2005-10-05 09:02 279K chromInfo.sql 2013-10-01 12:48 396 chainRn4Link.txt.gz 2006-06-21 06:41 455M chainRn4Link.sql 2006-06-21 06:34 1.4K chainRn4.txt.gz 2006-06-21 06:34 57M chainRn4.sql 2006-06-21 06:33 1.6K chainMm8Link.txt.gz 2006-05-10 06:37 440M chainMm8Link.sql 2013-10-01 12:48 577 chainMm8.txt.gz 2006-05-10 06:30 53M chainMm8.sql 2013-10-01 12:48 812 chainHg18Link.txt.gz 2006-04-16 06:29 441M chainHg18Link.sql 2013-10-01 12:48 579 chainHg18.txt.gz 2006-04-16 06:25 36M chainHg18.sql 2013-10-01 12:48 880 blastHg18KG.txt.gz 2007-03-01 07:13 2.9M blastHg18KG.sql 2007-03-01 07:13 2.1K bigFiles.txt.gz 2022-11-27 03:08 33 bigFiles.sql 2022-11-27 03:08 1.4K augustusGene.txt.gz 2015-07-26 10:13 2.3M augustusGene.sql 2015-07-26 10:13 1.9K all_mrna.txt.gz 2020-08-20 22:23 1.8M all_mrna.sql 2020-08-20 22:23 2.3K all_est.txt.gz 2016-06-05 09:00 65M all_est.sql 2016-06-05 09:00 2.3K