This directory contains a dump of the UCSC genome annotation database 
for the Mar. 2005 cow genome assembled by the Baylor College of Medicine 
Human Genome Sequencing Center (bosTau2 BCM HGSC Btau_2.0). For more 
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau2
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website. 
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/bosTau2/database/. To download multiple files, use the 
"mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.

      Name                        Last modified      Size  Description
Parent Directory - chromInfo.txt.gz 2005-10-05 09:02 279K contigOrient.txt.gz 2005-10-05 09:03 1.5M cpgIslandExt.txt.gz 2005-10-05 09:03 2.0M gap.txt.gz 2005-10-05 09:03 6.2M gc5Base.txt.gz 2005-10-05 09:05 14M genscan.txt.gz 2005-10-05 09:05 3.2M genscanPep.txt.gz 2005-10-05 09:05 11M gold.txt.gz 2005-10-05 09:06 11M history.txt.gz 2005-10-05 09:06 279 quality.txt.gz 2005-10-05 09:08 62M rmsk.txt.gz 2005-10-05 09:11 140M simpleRepeat.txt.gz 2005-10-05 09:14 10M geneid.txt.gz 2005-10-28 05:23 3.7M geneidPep.txt.gz 2005-10-28 05:23 7.9M sgpGene.txt.gz 2005-12-31 06:16 2.4M chainHg18.txt.gz 2006-04-16 06:25 36M chainHg18Link.txt.gz 2006-04-16 06:29 441M netHg18.txt.gz 2006-04-16 06:34 69M chainMm8.txt.gz 2006-05-10 06:30 53M chainMm8Link.txt.gz 2006-05-10 06:37 440M netMm8.txt.gz 2006-05-10 06:44 54M chainRn4.sql 2006-06-21 06:33 1.6K chainRn4.txt.gz 2006-06-21 06:34 57M chainRn4Link.sql 2006-06-21 06:34 1.4K chainRn4Link.txt.gz 2006-06-21 06:41 455M netRn4.sql 2006-06-21 06:46 2.2K netRn4.txt.gz 2006-06-21 06:47 52M blastHg18KG.sql 2007-03-01 07:13 2.1K blastHg18KG.txt.gz 2007-03-01 07:13 2.9M quality.sql 2013-10-01 12:48 892 chainHg18.sql 2013-10-01 12:48 880 chainHg18Link.sql 2013-10-01 12:48 579 chainMm8.sql 2013-10-01 12:48 812 chainMm8Link.sql 2013-10-01 12:48 577 chromInfo.sql 2013-10-01 12:48 396 contigOrient.sql 2013-10-01 12:48 686 cpgIslandExt.sql 2013-10-01 12:48 751 gap.sql 2013-10-01 12:48 634 gc5Base.sql 2013-10-01 12:48 891 geneid.sql 2013-10-01 12:48 1.0K geneidPep.sql 2013-10-01 12:48 328 genscan.sql 2013-10-01 12:48 748 genscanPep.sql 2013-10-01 12:48 330 gold.sql 2013-10-01 12:48 711 history.sql 2013-10-01 12:48 537 netHg18.sql 2013-10-01 12:48 1.3K netMm8.sql 2013-10-01 12:48 1.3K rmsk.sql 2013-10-01 12:48 1.0K sgpGene.sql 2013-10-01 12:48 1.0K simpleRepeat.sql 2013-10-01 12:48 1.0K xenoMrna.sql 2013-11-03 07:21 2.1K xenoMrna.txt.gz 2013-11-03 07:21 33 grp.sql 2014-03-02 03:37 1.4K grp.txt.gz 2014-03-02 03:37 223 cpgIslandExtUnmasked.sql 2014-06-01 08:19 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 08:19 2.1M augustusGene.sql 2015-07-26 10:13 1.9K augustusGene.txt.gz 2015-07-26 10:13 2.3M intronEst.sql 2016-06-05 08:59 2.3K intronEst.txt.gz 2016-06-05 08:59 33M estOrientInfo.sql 2016-06-05 08:59 1.9K estOrientInfo.txt.gz 2016-06-05 09:00 21M all_est.sql 2016-06-05 09:00 2.3K all_est.txt.gz 2016-06-05 09:00 65M mgcFullMrna.sql 2020-03-01 04:51 2.3K mgcFullMrna.txt.gz 2020-03-01 04:51 950K mgcGenes.sql 2020-03-01 04:51 1.9K mgcGenes.txt.gz 2020-03-01 04:51 822K tableDescriptions.sql 2020-03-01 04:51 1.4K tableDescriptions.txt.gz 2020-03-01 04:51 5.0K all_mrna.sql 2020-08-20 22:23 2.3K all_mrna.txt.gz 2020-08-20 22:23 1.8M gbLoaded.sql 2020-08-20 22:45 1.7K mrnaOrientInfo.sql 2020-08-20 22:45 1.9K refFlat.sql 2020-08-20 22:45 1.9K refGene.sql 2020-08-20 22:45 2.2K refSeqAli.sql 2020-08-20 22:45 2.3K xenoRefFlat.sql 2020-08-20 22:45 1.9K xenoRefGene.sql 2020-08-20 22:45 1.8K xenoRefSeqAli.sql 2020-08-20 22:45 2.4K refGene.txt.gz 2020-08-20 22:45 1.6M refFlat.txt.gz 2020-08-20 22:45 1.4M xenoRefGene.txt.gz 2020-08-20 22:45 35M xenoRefFlat.txt.gz 2020-08-20 22:45 37M mrnaOrientInfo.txt.gz 2020-08-20 22:45 704K refSeqAli.txt.gz 2020-08-20 22:45 1.6M xenoRefSeqAli.txt.gz 2020-08-20 22:45 45M gbLoaded.txt.gz 2020-08-20 22:45 207K trackDb.sql 2021-08-02 14:26 2.1K trackDb.txt.gz 2021-08-02 14:26 26K hgFindSpec.sql 2021-08-02 14:26 1.8K hgFindSpec.txt.gz 2021-08-02 14:26 819 tableList.sql 2022-08-07 03:08 1.6K tableList.txt.gz 2022-08-07 03:08 3.2K bigFiles.sql 2022-08-07 03:08 1.4K bigFiles.txt.gz 2022-08-07 03:08 33