This directory contains a dump of the UCSC genome annotation database 
for the Mar. 2005 cow genome assembled by the Baylor College of Medicine 
Human Genome Sequencing Center (bosTau2 BCM HGSC Btau_2.0). For more 
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau2
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

----------------------------------------------------------------
If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website. 
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/bosTau2/database/. To download multiple files, use the 
"mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.

      Name                        Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2022-08-07 03:08 33 xenoMrna.txt.gz 2013-11-03 07:21 33 grp.txt.gz 2014-03-02 03:37 223 history.txt.gz 2005-10-05 09:06 279 geneidPep.sql 2013-10-01 12:48 328 genscanPep.sql 2013-10-01 12:48 330 chromInfo.sql 2013-10-01 12:48 396 history.sql 2013-10-01 12:48 537 chainMm8Link.sql 2013-10-01 12:48 577 chainHg18Link.sql 2013-10-01 12:48 579 gap.sql 2013-10-01 12:48 634 contigOrient.sql 2013-10-01 12:48 686 gold.sql 2013-10-01 12:48 711 genscan.sql 2013-10-01 12:48 748 cpgIslandExt.sql 2013-10-01 12:48 751 chainMm8.sql 2013-10-01 12:48 812 hgFindSpec.txt.gz 2021-08-02 14:26 819 chainHg18.sql 2013-10-01 12:48 880 gc5Base.sql 2013-10-01 12:48 891 quality.sql 2013-10-01 12:48 892 rmsk.sql 2013-10-01 12:48 1.0K simpleRepeat.sql 2013-10-01 12:48 1.0K geneid.sql 2013-10-01 12:48 1.0K sgpGene.sql 2013-10-01 12:48 1.0K netMm8.sql 2013-10-01 12:48 1.3K netHg18.sql 2013-10-01 12:48 1.3K chainRn4Link.sql 2006-06-21 06:34 1.4K bigFiles.sql 2022-08-07 03:08 1.4K grp.sql 2014-03-02 03:37 1.4K tableDescriptions.sql 2020-03-01 04:51 1.4K tableList.sql 2022-08-07 03:08 1.6K chainRn4.sql 2006-06-21 06:33 1.6K gbLoaded.sql 2020-08-20 22:45 1.7K cpgIslandExtUnmasked.sql 2014-06-01 08:19 1.7K hgFindSpec.sql 2021-08-02 14:26 1.8K xenoRefGene.sql 2020-08-20 22:45 1.8K refFlat.sql 2020-08-20 22:45 1.9K xenoRefFlat.sql 2020-08-20 22:45 1.9K estOrientInfo.sql 2016-06-05 08:59 1.9K mrnaOrientInfo.sql 2020-08-20 22:45 1.9K mgcGenes.sql 2020-03-01 04:51 1.9K augustusGene.sql 2015-07-26 10:13 1.9K trackDb.sql 2021-08-02 14:26 2.1K xenoMrna.sql 2013-11-03 07:21 2.1K blastHg18KG.sql 2007-03-01 07:13 2.1K netRn4.sql 2006-06-21 06:46 2.2K refGene.sql 2020-08-20 22:45 2.2K all_est.sql 2016-06-05 09:00 2.3K all_mrna.sql 2020-08-20 22:23 2.3K intronEst.sql 2016-06-05 08:59 2.3K refSeqAli.sql 2020-08-20 22:45 2.3K mgcFullMrna.sql 2020-03-01 04:51 2.3K xenoRefSeqAli.sql 2020-08-20 22:45 2.4K tableList.txt.gz 2022-08-07 03:08 3.2K tableDescriptions.txt.gz 2020-03-01 04:51 5.0K trackDb.txt.gz 2021-08-02 14:26 26K gbLoaded.txt.gz 2020-08-20 22:45 207K chromInfo.txt.gz 2005-10-05 09:02 279K mrnaOrientInfo.txt.gz 2020-08-20 22:45 704K mgcGenes.txt.gz 2020-03-01 04:51 822K mgcFullMrna.txt.gz 2020-03-01 04:51 950K refFlat.txt.gz 2020-08-20 22:45 1.4M contigOrient.txt.gz 2005-10-05 09:03 1.5M refGene.txt.gz 2020-08-20 22:45 1.6M refSeqAli.txt.gz 2020-08-20 22:45 1.6M all_mrna.txt.gz 2020-08-20 22:23 1.8M cpgIslandExt.txt.gz 2005-10-05 09:03 2.0M cpgIslandExtUnmasked.txt.gz 2014-06-01 08:19 2.1M augustusGene.txt.gz 2015-07-26 10:13 2.3M sgpGene.txt.gz 2005-12-31 06:16 2.4M blastHg18KG.txt.gz 2007-03-01 07:13 2.9M genscan.txt.gz 2005-10-05 09:05 3.2M geneid.txt.gz 2005-10-28 05:23 3.7M gap.txt.gz 2005-10-05 09:03 6.2M geneidPep.txt.gz 2005-10-28 05:23 7.9M simpleRepeat.txt.gz 2005-10-05 09:14 10M genscanPep.txt.gz 2005-10-05 09:05 11M gold.txt.gz 2005-10-05 09:06 11M gc5Base.txt.gz 2005-10-05 09:05 14M estOrientInfo.txt.gz 2016-06-05 09:00 21M intronEst.txt.gz 2016-06-05 08:59 33M xenoRefGene.txt.gz 2020-08-20 22:45 35M chainHg18.txt.gz 2006-04-16 06:25 36M xenoRefFlat.txt.gz 2020-08-20 22:45 37M xenoRefSeqAli.txt.gz 2020-08-20 22:45 45M netRn4.txt.gz 2006-06-21 06:47 52M chainMm8.txt.gz 2006-05-10 06:30 53M netMm8.txt.gz 2006-05-10 06:44 54M chainRn4.txt.gz 2006-06-21 06:34 57M quality.txt.gz 2005-10-05 09:08 62M all_est.txt.gz 2016-06-05 09:00 65M netHg18.txt.gz 2006-04-16 06:34 69M rmsk.txt.gz 2005-10-05 09:11 140M chainMm8Link.txt.gz 2006-05-10 06:37 440M chainHg18Link.txt.gz 2006-04-16 06:29 441M chainRn4Link.txt.gz 2006-06-21 06:41 455M