This directory contains a dump of the UCSC genome annotation database 
for the April 2005 Spur_0.5 freeze of the S. purpuratus genome (UCSC version 
strPur1) obtained from the Baylor College of Medicine Human Genome
Sequencing Center.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=strPur1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then 
go to the directory goldenPath/strPur1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely usable for any purpose. 

The Spur_0.5 data are made available before scientific publication with the 
following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged in
databases. 
2. Users are free to use the data in scientific papers analyzing particular 
genes and regions if the providers of these data are properly acknowledged. 
Please cite the BCM-HGSC web site or publications from BCM-HGSC referring to 
the genome sequence. 
3. BCM HGSC plans to publish the assembly and genomic annotation of the dataset,
including large-scale identification of regions of evolutionary conservation. 
4. This is in accordance with, and with the understandings in the Fort 
Lauderdale meeting discussing Community Resource Projects and the resulting 
NHGRI policy statement. 
5. Any redistribution of the data should carry this notice. 


      Name                     Last modified      Size  Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-09-02 07:33 22M xenoRefSeqAli.sql 2020-09-02 07:33 2.1K xenoRefGene.txt.gz 2020-09-02 07:33 20M xenoRefGene.sql 2020-09-02 07:33 1.9K xenoRefFlat.txt.gz 2020-09-02 07:33 18M xenoRefFlat.sql 2020-09-02 07:33 1.7K trackDb.txt.gz 2021-06-10 16:56 14K trackDb.sql 2021-06-10 16:56 2.1K tableList.txt.gz 2021-06-13 03:12 2.2K tableList.sql 2021-06-13 03:12 1.6K tableDescriptions.txt.gz 2019-07-21 03:43 4.7K tableDescriptions.sql 2019-07-21 03:43 1.4K simpleRepeat.txt.gz 2006-03-06 15:44 11M simpleRepeat.sql 2013-10-01 12:48 1.1K rmsk.txt.gz 2006-03-06 15:43 16M rmsk.sql 2013-10-01 12:48 1.1K repeatScout100.txt.gz 2006-03-06 15:41 38M repeatScout100.sql 2013-10-01 12:48 1.1K repeatScout30.txt.gz 2006-03-06 15:43 44M repeatScout30.sql 2013-10-01 12:48 1.1K repeatScout20.txt.gz 2006-03-06 15:42 48M repeatScout20.sql 2013-10-01 12:48 1.0K repeatScout.txt.gz 2006-03-06 15:40 58M repeatScout.sql 2013-10-01 12:48 1.0K refSeqAli.txt.gz 2020-03-01 09:02 69K refSeqAli.sql 2020-03-01 09:02 2.1K refGene.txt.gz 2020-09-02 07:33 57K refGene.sql 2020-09-02 07:33 1.9K refFlat.txt.gz 2020-09-02 07:33 51K refFlat.sql 2020-09-02 07:33 1.7K quality.txt.gz 2006-03-06 15:39 24M quality.sql 2013-10-01 12:48 892 netHg18.txt.gz 2006-07-15 08:55 13M netHg18.sql 2006-07-15 08:55 2.2K mrnaOrientInfo.txt.gz 2020-03-01 09:02 596K mrnaOrientInfo.sql 2020-03-01 09:02 1.8K history.txt.gz 2006-03-06 15:38 241 history.sql 2013-10-01 12:48 537 hgFindSpec.txt.gz 2021-06-10 16:56 613 hgFindSpec.sql 2021-06-10 16:56 1.8K grp.txt.gz 2014-03-02 04:14 223 grp.sql 2014-03-02 04:14 1.4K gold.txt.gz 2006-03-06 15:38 4.4M gold.sql 2013-10-01 12:48 799 genscanPep.txt.gz 2006-03-06 15:38 13M genscanPep.sql 2013-10-01 12:48 330 genscan.txt.gz 2006-03-06 15:38 2.9M genscan.sql 2013-10-01 12:48 748 gc5Base.txt.gz 2006-03-06 15:38 7.0M gc5Base.sql 2013-10-01 12:48 892 gbLoaded.txt.gz 2020-09-02 07:33 15K gbLoaded.sql 2020-09-02 07:33 1.6K gap.txt.gz 2006-03-06 15:37 960K gap.sql 2013-10-01 12:48 722 chromInfo.txt.gz 2006-03-06 15:37 905K chromInfo.sql 2013-10-01 12:48 396 chainHg18Link.txt.gz 2006-07-15 08:52 231M chainHg18Link.sql 2006-07-15 08:48 1.4K chainHg18.txt.gz 2006-07-15 08:47 72M chainHg18.sql 2006-07-15 08:46 1.6K blastHg18KG.txt.gz 2007-02-28 07:30 1.4M blastHg18KG.sql 2007-02-28 07:30 2.1K bigFiles.txt.gz 2021-06-13 03:12 33 bigFiles.sql 2021-06-13 03:12 1.4K all_mrna.txt.gz 2019-07-14 09:24 2.8M all_mrna.sql 2019-07-14 09:24 2.1K