This directory contains a dump of the UCSC genome annotation database 
for the April 2005 Spur_0.5 freeze of the S. purpuratus genome (UCSC version 
strPur1) obtained from the Baylor College of Medicine Human Genome
Sequencing Center.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=strPur1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then 
go to the directory goldenPath/strPur1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely usable for any purpose. 

The Spur_0.5 data are made available before scientific publication with the 
following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged in
databases. 
2. Users are free to use the data in scientific papers analyzing particular 
genes and regions if the providers of these data are properly acknowledged. 
Please cite the BCM-HGSC web site or publications from BCM-HGSC referring to 
the genome sequence. 
3. BCM HGSC plans to publish the assembly and genomic annotation of the dataset,
including large-scale identification of regions of evolutionary conservation. 
4. This is in accordance with, and with the understandings in the Fort 
Lauderdale meeting discussing Community Resource Projects and the resulting 
NHGRI policy statement. 
5. Any redistribution of the data should carry this notice. 


      Name                     Last modified      Size  Description
Parent Directory - chromInfo.txt.gz 2006-03-06 15:37 905K gap.txt.gz 2006-03-06 15:37 960K gc5Base.txt.gz 2006-03-06 15:38 7.0M genscan.txt.gz 2006-03-06 15:38 2.9M genscanPep.txt.gz 2006-03-06 15:38 13M gold.txt.gz 2006-03-06 15:38 4.4M history.txt.gz 2006-03-06 15:38 241 quality.txt.gz 2006-03-06 15:39 24M repeatScout.txt.gz 2006-03-06 15:40 58M repeatScout100.txt.gz 2006-03-06 15:41 38M repeatScout20.txt.gz 2006-03-06 15:42 48M repeatScout30.txt.gz 2006-03-06 15:43 44M rmsk.txt.gz 2006-03-06 15:43 16M simpleRepeat.txt.gz 2006-03-06 15:44 11M chainHg18.sql 2006-07-15 08:46 1.6K chainHg18.txt.gz 2006-07-15 08:47 72M chainHg18Link.sql 2006-07-15 08:48 1.4K chainHg18Link.txt.gz 2006-07-15 08:52 231M netHg18.sql 2006-07-15 08:55 2.2K netHg18.txt.gz 2006-07-15 08:55 13M blastHg18KG.sql 2007-02-28 07:30 2.1K blastHg18KG.txt.gz 2007-02-28 07:30 1.4M chromInfo.sql 2013-10-01 12:48 396 gap.sql 2013-10-01 12:48 722 gc5Base.sql 2013-10-01 12:48 892 genscan.sql 2013-10-01 12:48 748 genscanPep.sql 2013-10-01 12:48 330 gold.sql 2013-10-01 12:48 799 history.sql 2013-10-01 12:48 537 quality.sql 2013-10-01 12:48 892 repeatScout.sql 2013-10-01 12:48 1.0K repeatScout20.sql 2013-10-01 12:48 1.0K repeatScout30.sql 2013-10-01 12:48 1.1K repeatScout100.sql 2013-10-01 12:48 1.1K rmsk.sql 2013-10-01 12:48 1.1K simpleRepeat.sql 2013-10-01 12:48 1.1K grp.sql 2014-03-02 04:14 1.4K grp.txt.gz 2014-03-02 04:14 223 all_mrna.sql 2019-07-14 09:24 2.1K all_mrna.txt.gz 2019-07-14 09:24 2.8M tableDescriptions.sql 2019-07-21 03:43 1.4K tableDescriptions.txt.gz 2019-07-21 03:43 4.7K mrnaOrientInfo.sql 2020-03-01 09:02 1.8K mrnaOrientInfo.txt.gz 2020-03-01 09:02 596K refSeqAli.sql 2020-03-01 09:02 2.1K refSeqAli.txt.gz 2020-03-01 09:02 69K refFlat.sql 2020-09-02 07:33 1.7K refGene.sql 2020-09-02 07:33 1.9K refGene.txt.gz 2020-09-02 07:33 57K refFlat.txt.gz 2020-09-02 07:33 51K xenoRefFlat.sql 2020-09-02 07:33 1.7K xenoRefGene.sql 2020-09-02 07:33 1.9K xenoRefGene.txt.gz 2020-09-02 07:33 20M xenoRefFlat.txt.gz 2020-09-02 07:33 18M gbLoaded.sql 2020-09-02 07:33 1.6K xenoRefSeqAli.sql 2020-09-02 07:33 2.1K xenoRefSeqAli.txt.gz 2020-09-02 07:33 22M gbLoaded.txt.gz 2020-09-02 07:33 15K trackDb.sql 2021-06-10 16:56 2.1K trackDb.txt.gz 2021-06-10 16:56 14K hgFindSpec.sql 2021-06-10 16:56 1.8K hgFindSpec.txt.gz 2021-06-10 16:56 613 bigFiles.sql 2021-06-13 03:12 1.4K bigFiles.txt.gz 2021-06-13 03:12 33 tableList.sql 2021-06-13 03:12 1.6K tableList.txt.gz 2021-06-13 03:12 2.2K