This directory contains the Mar. 2007 assembly of the platypus genome
(ornAna1, WUSTL version 5.0.1), as well as repeat annotations and GenBank
sequences.
This assembly was produced by the Genome Sequencing Center at the
Washington University School of Medicine in St. Louis.
For more information on the platypus genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Ornithorhynchus%20anatinus
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ornAna1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ornAna1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
The Platypus sequence is made freely available to the community by the
Genome Sequencing Center, Washington University School of Medicine, with
the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
databases.
2. Users are free to use the data in scientific papers analyzing these data
if the providers of these data are properly acknowledged. See
http://genome.ucsc.edu/goldenPath/credits.html for credit information.
3. The centers producing the data reserve the right to publish the initial
large-scale analyses of the data set, including large-scale identification
of regions of evolutionary conservation and large-scale genomic assembly.
Large-scale refers to regions with size on the order of a chromosome (that
is, 30 Mb or more).
4. Any redistribution of the data should carry this notice.
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
chainGalGal3.sql 2007-05-26 09:44 1.7K
chainGalGal3.txt.gz 2007-05-26 09:44 22M
chainGalGal3Link.sql 2007-05-26 09:44 1.4K
chainGalGal3Link.txt.gz 2007-05-26 09:45 85M
chromInfo.sql 2007-05-26 10:19 1.2K
chromInfo.txt.gz 2007-05-26 10:19 1.0M
gap.sql 2007-05-26 10:19 1.5K
gap.txt.gz 2007-05-26 10:19 2.7M
gc5Base.sql 2007-05-26 10:20 1.7K
gc5Base.txt.gz 2007-05-26 10:20 12M
gold.sql 2007-05-26 10:20 1.6K
gold.txt.gz 2007-05-26 10:21 5.7M
history.sql 2007-05-26 10:21 1.4K
history.txt.gz 2007-05-26 10:21 734
netGalGal3.sql 2007-05-26 10:22 2.2K
netGalGal3.txt.gz 2007-05-26 10:23 11M
phastCons6way.sql 2007-05-26 10:24 1.7K
phastCons6way.txt.gz 2007-05-26 10:25 23M
phastConsElements6way.sql 2007-05-26 10:25 1.4K
phastConsElements6way.txt.gz 2007-05-26 10:25 7.0M
simpleRepeat.sql 2007-05-26 10:27 1.9K
simpleRepeat.txt.gz 2007-05-26 10:27 11M
rmsk.sql 2007-07-26 10:56 1.9K
rmsk.txt.gz 2007-07-26 10:58 118M
wssdCoverage.sql 2007-09-21 12:13 1.3K
wssdCoverage.txt.gz 2007-09-21 12:13 32K
nestedRepeats.sql 2007-10-02 11:46 1.9K
nestedRepeats.txt.gz 2007-10-02 11:46 11M
genomicSuperDups.sql 2007-12-13 12:02 2.6K
genomicSuperDups.txt.gz 2007-12-13 12:02 13M
chainPonAbe2.sql 2008-03-09 05:20 1.7K
chainPonAbe2.txt.gz 2008-03-09 05:21 42M
chainPonAbe2Link.sql 2008-03-09 05:21 1.4K
chainPonAbe2Link.txt.gz 2008-03-09 05:25 202M
netPonAbe2.sql 2008-03-09 05:29 2.2K
netPonAbe2.txt.gz 2008-03-09 05:29 18M
chainCalJac1.sql 2008-04-24 05:52 1.7K
chainCalJac1.txt.gz 2008-04-24 05:54 40M
chainCalJac1Link.sql 2008-04-24 05:55 1.4K
chainCalJac1Link.txt.gz 2008-04-24 06:02 183M
netCalJac1.sql 2008-04-24 06:09 2.2K
netCalJac1.txt.gz 2008-04-24 06:10 17M
quality.sql 2008-11-30 12:21 1.7K
quality.txt.gz 2008-11-30 12:22 42M
netMonDom5.sql 2009-09-27 11:51 2.3K
netMonDom5.txt.gz 2009-09-27 11:51 21M
chainMonDom5Link.sql 2009-09-27 11:51 1.5K
chainMonDom5Link.txt.gz 2009-09-27 11:52 327M
chainMonDom5.sql 2009-09-27 11:54 1.8K
chainMonDom5.txt.gz 2009-09-27 11:54 84M
chainHg19.sql 2009-10-11 08:36 1.8K
chainHg19.txt.gz 2009-10-11 08:36 44M
netHg19.sql 2009-10-11 08:36 2.3K
netHg19.txt.gz 2009-10-11 08:36 18M
chainHg19Link.sql 2009-10-11 08:37 1.5K
chainHg19Link.txt.gz 2009-10-11 08:37 219M
netEquCab2.sql 2009-12-13 13:02 2.3K
netEquCab2.txt.gz 2009-12-13 13:02 13M
chainEquCab2.sql 2009-12-13 13:02 1.8K
chainEquCab2.txt.gz 2009-12-13 13:02 31M
chainEquCab2Link.sql 2009-12-13 13:03 1.5K
chainEquCab2Link.txt.gz 2009-12-13 13:03 148M
blastHg18KG.sql 2009-12-20 15:22 2.3K
blastHg18KG.txt.gz 2009-12-20 15:22 2.2M
all_est.sql 2011-04-11 17:24 2.3K
all_est.txt.gz 2011-04-11 17:24 1.4M
estOrientInfo.sql 2011-04-11 17:24 1.8K
estOrientInfo.txt.gz 2011-04-11 17:24 418K
intronEst.sql 2011-04-18 07:22 2.0K
intronEst.txt.gz 2011-04-18 07:22 196K
multiz6waySummary.sql 2011-08-21 03:55 1.5K
multiz6waySummary.txt.gz 2011-08-21 03:55 6.8M
multiz6way.sql 2011-08-21 03:55 1.5K
multiz6way.txt.gz 2011-08-21 03:55 39M
multiz6wayFrames.sql 2011-08-21 03:56 1.7K
multiz6wayFrames.txt.gz 2011-08-21 03:56 18M
extFile.sql 2011-08-21 03:56 1.4K
extFile.txt.gz 2011-08-21 03:56 85
chainAnoCar2Link.sql 2011-10-16 03:58 1.5K
chainAnoCar2Link.txt.gz 2011-10-16 03:58 52M
chainAnoCar2.sql 2011-10-16 03:59 1.6K
chainAnoCar2.txt.gz 2011-10-16 03:59 12M
netAnoCar2.sql 2011-10-16 03:59 2.0K
netAnoCar2.txt.gz 2011-10-16 03:59 8.0M
cpgIslandExt.sql 2011-12-04 15:03 1.6K
cpgIslandExt.txt.gz 2011-12-04 15:03 1.6M
tRNAs.sql 2012-04-23 07:43 1.7K
tRNAs.txt.gz 2012-04-23 07:43 25K
chainBosTau7.sql 2012-06-16 23:07 1.6K
chainBosTau7.txt.gz 2012-06-16 23:08 46M
netBosTau7.sql 2012-06-16 23:10 2.0K
netBosTau7.txt.gz 2012-06-16 23:10 17M
chainBosTau7Link.sql 2012-06-16 23:11 1.5K
chainBosTau7Link.txt.gz 2012-06-16 23:15 255M
cytoBandIdeo.sql 2013-04-28 19:34 1.5K
cytoBandIdeo.txt.gz 2013-04-28 19:34 1.0M
chainMm10.sql 2013-10-27 19:18 1.7K
chainMm10.txt.gz 2013-10-27 19:18 30M
chainMm10Link.sql 2013-10-27 19:18 1.5K
chainMm10Link.txt.gz 2013-10-27 19:19 176M
netMm10.sql 2013-10-27 19:19 2.1K
netMm10.txt.gz 2013-10-27 19:19 13M
grp.sql 2014-03-02 04:14 1.4K
grp.txt.gz 2014-03-02 04:14 208
cpgIslandExtUnmasked.sql 2014-06-01 17:36 1.7K
cpgIslandExtUnmasked.txt.gz 2014-06-01 17:36 2.3M
augustusGene.sql 2015-07-26 17:13 1.9K
augustusGene.txt.gz 2015-07-26 17:13 1.9M
microsat.sql 2015-08-23 22:40 1.5K
microsat.txt.gz 2015-08-23 22:40 96K
chromAlias.sql 2017-09-03 05:42 1.4K
chromAlias.txt.gz 2017-09-03 05:42 2.7M
all_mrna.sql 2018-04-01 07:38 2.1K
all_mrna.txt.gz 2018-04-01 07:38 14K
ensGene.sql 2019-02-10 03:42 1.9K
ensGene.txt.gz 2019-02-10 03:42 2.0M
ensemblSource.sql 2019-02-10 03:42 1.4K
ensemblSource.txt.gz 2019-02-10 03:42 95K
ensGtp.sql 2019-02-10 03:42 1.4K
ensGtp.txt.gz 2019-02-10 03:42 323K
ensPep.sql 2019-02-10 03:42 1.3K
ensPep.txt.gz 2019-02-10 03:42 4.9M
ensemblToGeneName.sql 2019-02-10 03:42 1.4K
ensemblToGeneName.txt.gz 2019-02-10 03:42 72K
mrnaOrientInfo.sql 2020-03-01 08:07 1.8K
mrnaOrientInfo.txt.gz 2020-03-01 08:07 12K
refSeqAli.sql 2020-03-01 08:08 2.1K
refSeqAli.txt.gz 2020-03-01 08:08 22K
xenoMrna.sql 2020-08-22 14:19 2.1K
xenoMrna.txt.gz 2020-08-22 14:19 306M
refGene.sql 2020-08-22 14:19 1.9K
refGene.txt.gz 2020-08-22 14:19 21K
refFlat.sql 2020-08-22 14:19 1.7K
refFlat.txt.gz 2020-08-22 14:19 19K
xenoRefGene.sql 2020-08-22 14:19 2.0K
xenoRefGene.txt.gz 2020-08-22 14:19 30M
xenoRefFlat.sql 2020-08-22 14:19 1.7K
xenoRefFlat.txt.gz 2020-08-22 14:19 27M
xenoRefSeqAli.sql 2020-08-22 14:19 2.1K
xenoRefSeqAli.txt.gz 2020-08-22 14:19 31M
gbLoaded.sql 2020-08-22 14:19 1.6K
gbLoaded.txt.gz 2020-08-22 14:19 109K
trackDb.sql 2023-03-28 13:51 2.1K
trackDb.txt.gz 2023-03-28 13:51 40K
hgFindSpec.sql 2023-03-28 13:51 1.8K
hgFindSpec.txt.gz 2023-03-28 13:51 872
tableDescriptions.sql 2024-12-07 02:03 1.5K
tableDescriptions.txt.gz 2024-12-07 02:03 7.3K
tableList.sql 2024-12-08 03:16 1.6K
tableList.txt.gz 2024-12-08 03:16 4.6K
bigFiles.sql 2024-12-08 03:16 1.4K
bigFiles.txt.gz 2024-12-08 03:16 33