This directory contains the Mar. 2007 assembly of the platypus genome
(ornAna1, WUSTL version 5.0.1), as well as repeat annotations and GenBank
sequences.

This assembly was produced by the Genome Sequencing Center at the 
Washington University School of Medicine in St. Louis.
For more information on the platypus genome, see the project website:
  http://genome.wustl.edu/genome.cgi?GENOME=Ornithorhynchus%20anatinus

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=ornAna1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/ornAna1/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

The Platypus sequence is made freely available to the community by the
Genome Sequencing Center, Washington University School of Medicine, with
the following understanding:

1. The data may be freely downloaded, used in analyses, and repackaged in
   databases.

2. Users are free to use the data in scientific papers analyzing these data
   if the providers of these data are properly acknowledged.  See
   http://genome.ucsc.edu/goldenPath/credits.html for credit information.

3. The centers producing the data reserve the right to publish the initial
   large-scale analyses of the data set, including large-scale identification
   of regions of evolutionary conservation and large-scale genomic assembly.
   Large-scale refers to regions with size on the order of a chromosome (that
   is, 30 Mb or more).

4. Any redistribution of the data should carry this notice.

All the files and tables in this directory are freely usable for any purpose.

      Name                         Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2024-03-24 03:21 33 extFile.txt.gz 2011-08-21 03:56 85 grp.txt.gz 2014-03-02 04:14 208 history.txt.gz 2007-05-26 10:21 734 hgFindSpec_pushedout.txt.gz 2021-12-27 12:22 833 hgFindSpec.txt.gz 2023-03-28 13:51 872 chromInfo.sql 2007-05-26 10:19 1.2K wssdCoverage.sql 2007-09-21 12:13 1.3K ensPep.sql 2019-02-10 03:42 1.3K ensemblSource.sql 2019-02-10 03:42 1.4K bigFiles.sql 2024-03-24 03:21 1.4K grp.sql 2014-03-02 04:14 1.4K ensemblToGeneName.sql 2019-02-10 03:42 1.4K extFile.sql 2011-08-21 03:56 1.4K history.sql 2007-05-26 10:21 1.4K chainCalJac1Link.sql 2008-04-24 05:55 1.4K chainGalGal3Link.sql 2007-05-26 09:44 1.4K chainPonAbe2Link.sql 2008-03-09 05:21 1.4K ensGtp.sql 2019-02-10 03:42 1.4K chromAlias.sql 2017-09-03 05:42 1.4K tableDescriptions.sql 2024-03-23 02:03 1.4K phastConsElements6way.sql 2007-05-26 10:25 1.4K multiz6way.sql 2011-08-21 03:55 1.5K chainAnoCar2Link.sql 2011-10-16 03:58 1.5K chainBosTau7Link.sql 2012-06-16 23:11 1.5K microsat.sql 2015-08-23 22:40 1.5K gap.sql 2007-05-26 10:19 1.5K multiz6waySummary.sql 2011-08-21 03:55 1.5K cytoBandIdeo.sql 2013-04-28 19:34 1.5K chainHg19Link.sql 2009-10-11 08:37 1.5K chainMm10Link.sql 2013-10-27 19:18 1.5K chainEquCab2Link.sql 2009-12-13 13:03 1.5K chainMonDom5Link.sql 2009-09-27 11:51 1.5K tableList.sql 2024-03-24 03:21 1.6K gold.sql 2007-05-26 10:20 1.6K gbLoaded.sql 2020-08-22 14:19 1.6K cpgIslandExt.sql 2011-12-04 15:03 1.6K chainAnoCar2.sql 2011-10-16 03:59 1.6K chainBosTau7.sql 2012-06-16 23:07 1.6K chainCalJac1.sql 2008-04-24 05:52 1.7K chainGalGal3.sql 2007-05-26 09:44 1.7K chainPonAbe2.sql 2008-03-09 05:20 1.7K multiz6wayFrames.sql 2011-08-21 03:56 1.7K tRNAs.sql 2012-04-23 07:43 1.7K chainMm10.sql 2013-10-27 19:18 1.7K cpgIslandExtUnmasked.sql 2014-06-01 17:36 1.7K gc5Base.sql 2007-05-26 10:20 1.7K quality.sql 2008-11-30 12:21 1.7K refFlat.sql 2020-08-22 14:19 1.7K phastCons6way.sql 2007-05-26 10:24 1.7K xenoRefFlat.sql 2020-08-22 14:19 1.7K hgFindSpec.sql 2023-03-28 13:51 1.8K chainHg19.sql 2009-10-11 08:36 1.8K mrnaOrientInfo.sql 2020-03-01 08:07 1.8K hgFindSpec_pushedout.sql 2021-12-27 12:22 1.8K chainEquCab2.sql 2009-12-13 13:02 1.8K chainMonDom5.sql 2009-09-27 11:54 1.8K estOrientInfo.sql 2011-04-11 17:24 1.8K rmsk.sql 2007-07-26 10:56 1.9K nestedRepeats.sql 2007-10-02 11:46 1.9K simpleRepeat.sql 2007-05-26 10:27 1.9K ensGene.sql 2019-02-10 03:42 1.9K augustusGene.sql 2015-07-26 17:13 1.9K refGene.sql 2020-08-22 14:19 1.9K xenoRefGene.sql 2020-08-22 14:19 2.0K netAnoCar2.sql 2011-10-16 03:59 2.0K netBosTau7.sql 2012-06-16 23:10 2.0K intronEst.sql 2011-04-18 07:22 2.0K trackDb.sql 2023-03-28 13:51 2.1K trackDb_pushedout.sql 2021-12-27 12:22 2.1K netMm10.sql 2013-10-27 19:19 2.1K all_mrna.sql 2018-04-01 07:38 2.1K refSeqAli.sql 2020-03-01 08:08 2.1K xenoMrna.sql 2020-08-22 14:19 2.1K xenoRefSeqAli.sql 2020-08-22 14:19 2.1K netCalJac1.sql 2008-04-24 06:09 2.2K netGalGal3.sql 2007-05-26 10:22 2.2K netPonAbe2.sql 2008-03-09 05:29 2.2K all_est.sql 2011-04-11 17:24 2.3K blastHg18KG.sql 2009-12-20 15:22 2.3K netHg19.sql 2009-10-11 08:36 2.3K netEquCab2.sql 2009-12-13 13:02 2.3K netMonDom5.sql 2009-09-27 11:51 2.3K genomicSuperDups.sql 2007-12-13 12:02 2.6K tableList.txt.gz 2024-03-24 03:21 4.8K tableDescriptions.txt.gz 2024-03-23 02:03 7.3K mrnaOrientInfo.txt.gz 2020-03-01 08:07 12K all_mrna.txt.gz 2018-04-01 07:38 14K refFlat.txt.gz 2020-08-22 14:19 19K refGene.txt.gz 2020-08-22 14:19 21K refSeqAli.txt.gz 2020-03-01 08:08 22K tRNAs.txt.gz 2012-04-23 07:43 25K wssdCoverage.txt.gz 2007-09-21 12:13 32K trackDb_pushedout.txt.gz 2021-12-27 12:22 39K trackDb.txt.gz 2023-03-28 13:51 40K ensemblToGeneName.txt.gz 2019-02-10 03:42 72K ensemblSource.txt.gz 2019-02-10 03:42 95K microsat.txt.gz 2015-08-23 22:40 96K gbLoaded.txt.gz 2020-08-22 14:19 109K intronEst.txt.gz 2011-04-18 07:22 196K ensGtp.txt.gz 2019-02-10 03:42 323K estOrientInfo.txt.gz 2011-04-11 17:24 418K cytoBandIdeo.txt.gz 2013-04-28 19:34 1.0M chromInfo.txt.gz 2007-05-26 10:19 1.0M all_est.txt.gz 2011-04-11 17:24 1.4M cpgIslandExt.txt.gz 2011-12-04 15:03 1.6M augustusGene.txt.gz 2015-07-26 17:13 1.9M ensGene.txt.gz 2019-02-10 03:42 2.0M blastHg18KG.txt.gz 2009-12-20 15:22 2.2M cpgIslandExtUnmasked.txt.gz 2014-06-01 17:36 2.3M chromAlias.txt.gz 2017-09-03 05:42 2.7M gap.txt.gz 2007-05-26 10:19 2.7M ensPep.txt.gz 2019-02-10 03:42 4.9M gold.txt.gz 2007-05-26 10:21 5.7M multiz6waySummary.txt.gz 2011-08-21 03:55 6.8M phastConsElements6way.txt.gz 2007-05-26 10:25 7.0M netAnoCar2.txt.gz 2011-10-16 03:59 8.0M simpleRepeat.txt.gz 2007-05-26 10:27 11M netGalGal3.txt.gz 2007-05-26 10:23 11M nestedRepeats.txt.gz 2007-10-02 11:46 11M gc5Base.txt.gz 2007-05-26 10:20 12M chainAnoCar2.txt.gz 2011-10-16 03:59 12M genomicSuperDups.txt.gz 2007-12-13 12:02 13M netMm10.txt.gz 2013-10-27 19:19 13M netEquCab2.txt.gz 2009-12-13 13:02 13M netBosTau7.txt.gz 2012-06-16 23:10 17M netCalJac1.txt.gz 2008-04-24 06:10 17M multiz6wayFrames.txt.gz 2011-08-21 03:56 18M netPonAbe2.txt.gz 2008-03-09 05:29 18M netHg19.txt.gz 2009-10-11 08:36 18M netMonDom5.txt.gz 2009-09-27 11:51 21M chainGalGal3.txt.gz 2007-05-26 09:44 22M phastCons6way.txt.gz 2007-05-26 10:25 23M xenoRefFlat.txt.gz 2020-08-22 14:19 27M chainMm10.txt.gz 2013-10-27 19:18 30M xenoRefGene.txt.gz 2020-08-22 14:19 30M chainEquCab2.txt.gz 2009-12-13 13:02 31M xenoRefSeqAli.txt.gz 2020-08-22 14:19 31M multiz6way.txt.gz 2011-08-21 03:55 39M chainCalJac1.txt.gz 2008-04-24 05:54 40M quality.txt.gz 2008-11-30 12:22 42M chainPonAbe2.txt.gz 2008-03-09 05:21 42M chainHg19.txt.gz 2009-10-11 08:36 44M chainBosTau7.txt.gz 2012-06-16 23:08 46M chainAnoCar2Link.txt.gz 2011-10-16 03:58 52M chainMonDom5.txt.gz 2009-09-27 11:54 84M chainGalGal3Link.txt.gz 2007-05-26 09:45 85M rmsk.txt.gz 2007-07-26 10:58 118M chainEquCab2Link.txt.gz 2009-12-13 13:03 148M chainMm10Link.txt.gz 2013-10-27 19:19 176M chainCalJac1Link.txt.gz 2008-04-24 06:02 183M chainPonAbe2Link.txt.gz 2008-03-09 05:25 202M chainHg19Link.txt.gz 2009-10-11 08:37 219M chainBosTau7Link.txt.gz 2012-06-16 23:15 255M xenoMrna.txt.gz 2020-08-22 14:19 306M chainMonDom5Link.txt.gz 2009-09-27 11:52 327M