This directory contains the Mar. 2007 assembly of the platypus genome
(ornAna1, WUSTL version 5.0.1), as well as repeat annotations and GenBank
sequences.

This assembly was produced by the Genome Sequencing Center at the 
Washington University School of Medicine in St. Louis.
For more information on the platypus genome, see the project website:
  http://genome.wustl.edu/genome.cgi?GENOME=Ornithorhynchus%20anatinus

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=ornAna1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/ornAna1/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

The Platypus sequence is made freely available to the community by the
Genome Sequencing Center, Washington University School of Medicine, with
the following understanding:

1. The data may be freely downloaded, used in analyses, and repackaged in
   databases.

2. Users are free to use the data in scientific papers analyzing these data
   if the providers of these data are properly acknowledged.  See
   http://genome.ucsc.edu/goldenPath/credits.html for credit information.

3. The centers producing the data reserve the right to publish the initial
   large-scale analyses of the data set, including large-scale identification
   of regions of evolutionary conservation and large-scale genomic assembly.
   Large-scale refers to regions with size on the order of a chromosome (that
   is, 30 Mb or more).

4. Any redistribution of the data should carry this notice.

All the files and tables in this directory are freely usable for any purpose.

      Name                         Last modified      Size  Description
Parent Directory - all_est.sql 2011-04-11 17:24 2.3K all_est.txt.gz 2011-04-11 17:24 1.4M all_mrna.sql 2018-04-01 07:38 2.1K all_mrna.txt.gz 2018-04-01 07:38 14K augustusGene.sql 2015-07-26 17:13 1.9K augustusGene.txt.gz 2015-07-26 17:13 1.9M bigFiles.sql 2021-05-16 03:05 1.4K bigFiles.txt.gz 2021-05-16 03:05 33 blastHg18KG.sql 2009-12-20 15:22 2.3K blastHg18KG.txt.gz 2009-12-20 15:22 2.2M chainAnoCar2.sql 2011-10-16 03:59 1.6K chainAnoCar2.txt.gz 2011-10-16 03:59 12M chainAnoCar2Link.sql 2011-10-16 03:58 1.5K chainAnoCar2Link.txt.gz 2011-10-16 03:58 52M chainBosTau7.sql 2012-06-16 23:07 1.6K chainBosTau7.txt.gz 2012-06-16 23:08 46M chainBosTau7Link.sql 2012-06-16 23:11 1.5K chainBosTau7Link.txt.gz 2012-06-16 23:15 255M chainCalJac1.sql 2008-04-24 05:52 1.7K chainCalJac1.txt.gz 2008-04-24 05:54 40M chainCalJac1Link.sql 2008-04-24 05:55 1.4K chainCalJac1Link.txt.gz 2008-04-24 06:02 183M chainEquCab2.sql 2009-12-13 13:02 1.8K chainEquCab2.txt.gz 2009-12-13 13:02 31M chainEquCab2Link.sql 2009-12-13 13:03 1.5K chainEquCab2Link.txt.gz 2009-12-13 13:03 148M chainGalGal3.sql 2007-05-26 09:44 1.7K chainGalGal3.txt.gz 2007-05-26 09:44 22M chainGalGal3Link.sql 2007-05-26 09:44 1.4K chainGalGal3Link.txt.gz 2007-05-26 09:45 85M chainHg19.sql 2009-10-11 08:36 1.8K chainHg19.txt.gz 2009-10-11 08:36 44M chainHg19Link.sql 2009-10-11 08:37 1.5K chainHg19Link.txt.gz 2009-10-11 08:37 219M chainMm10.sql 2013-10-27 19:18 1.7K chainMm10.txt.gz 2013-10-27 19:18 30M chainMm10Link.sql 2013-10-27 19:18 1.5K chainMm10Link.txt.gz 2013-10-27 19:19 176M chainMonDom5.sql 2009-09-27 11:54 1.8K chainMonDom5.txt.gz 2009-09-27 11:54 84M chainMonDom5Link.sql 2009-09-27 11:51 1.5K chainMonDom5Link.txt.gz 2009-09-27 11:52 327M chainPonAbe2.sql 2008-03-09 05:20 1.7K chainPonAbe2.txt.gz 2008-03-09 05:21 42M chainPonAbe2Link.sql 2008-03-09 05:21 1.4K chainPonAbe2Link.txt.gz 2008-03-09 05:25 202M chromAlias.sql 2017-09-03 05:42 1.4K chromAlias.txt.gz 2017-09-03 05:42 2.7M chromInfo.sql 2007-05-26 10:19 1.2K chromInfo.txt.gz 2007-05-26 10:19 1.0M cpgIslandExt.sql 2011-12-04 15:03 1.6K cpgIslandExt.txt.gz 2011-12-04 15:03 1.6M cpgIslandExtUnmasked.sql 2014-06-01 17:36 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 17:36 2.3M cytoBandIdeo.sql 2013-04-28 19:34 1.5K cytoBandIdeo.txt.gz 2013-04-28 19:34 1.0M ensGene.sql 2019-02-10 03:42 1.9K ensGene.txt.gz 2019-02-10 03:42 2.0M ensGtp.sql 2019-02-10 03:42 1.4K ensGtp.txt.gz 2019-02-10 03:42 323K ensPep.sql 2019-02-10 03:42 1.3K ensPep.txt.gz 2019-02-10 03:42 4.9M ensemblSource.sql 2019-02-10 03:42 1.4K ensemblSource.txt.gz 2019-02-10 03:42 95K ensemblToGeneName.sql 2019-02-10 03:42 1.4K ensemblToGeneName.txt.gz 2019-02-10 03:42 72K estOrientInfo.sql 2011-04-11 17:24 1.8K estOrientInfo.txt.gz 2011-04-11 17:24 418K extFile.sql 2011-08-21 03:56 1.4K extFile.txt.gz 2011-08-21 03:56 85 gap.sql 2007-05-26 10:19 1.5K gap.txt.gz 2007-05-26 10:19 2.7M gbLoaded.sql 2020-08-22 14:19 1.6K gbLoaded.txt.gz 2020-08-22 14:19 109K gc5Base.sql 2007-05-26 10:20 1.7K gc5Base.txt.gz 2007-05-26 10:20 12M genomicSuperDups.sql 2007-12-13 12:02 2.6K genomicSuperDups.txt.gz 2007-12-13 12:02 13M gold.sql 2007-05-26 10:20 1.6K gold.txt.gz 2007-05-26 10:21 5.7M grp.sql 2014-03-02 04:14 1.4K grp.txt.gz 2014-03-02 04:14 208 hgFindSpec.sql 2020-10-25 08:15 1.7K hgFindSpec.txt.gz 2020-10-25 08:15 823 history.sql 2007-05-26 10:21 1.4K history.txt.gz 2007-05-26 10:21 734 intronEst.sql 2011-04-18 07:22 2.0K intronEst.txt.gz 2011-04-18 07:22 196K microsat.sql 2015-08-23 22:40 1.5K microsat.txt.gz 2015-08-23 22:40 96K mrnaOrientInfo.sql 2020-03-01 08:07 1.8K mrnaOrientInfo.txt.gz 2020-03-01 08:07 12K multiz6way.sql 2011-08-21 03:55 1.5K multiz6way.txt.gz 2011-08-21 03:55 39M multiz6wayFrames.sql 2011-08-21 03:56 1.7K multiz6wayFrames.txt.gz 2011-08-21 03:56 18M multiz6waySummary.sql 2011-08-21 03:55 1.5K multiz6waySummary.txt.gz 2011-08-21 03:55 6.8M nestedRepeats.sql 2007-10-02 11:46 1.9K nestedRepeats.txt.gz 2007-10-02 11:46 11M netAnoCar2.sql 2011-10-16 03:59 2.0K netAnoCar2.txt.gz 2011-10-16 03:59 8.0M netBosTau7.sql 2012-06-16 23:10 2.0K netBosTau7.txt.gz 2012-06-16 23:10 17M netCalJac1.sql 2008-04-24 06:09 2.2K netCalJac1.txt.gz 2008-04-24 06:10 17M netEquCab2.sql 2009-12-13 13:02 2.3K netEquCab2.txt.gz 2009-12-13 13:02 13M netGalGal3.sql 2007-05-26 10:22 2.2K netGalGal3.txt.gz 2007-05-26 10:23 11M netHg19.sql 2009-10-11 08:36 2.3K netHg19.txt.gz 2009-10-11 08:36 18M netMm10.sql 2013-10-27 19:19 2.1K netMm10.txt.gz 2013-10-27 19:19 13M netMonDom5.sql 2009-09-27 11:51 2.3K netMonDom5.txt.gz 2009-09-27 11:51 21M netPonAbe2.sql 2008-03-09 05:29 2.2K netPonAbe2.txt.gz 2008-03-09 05:29 18M phastCons6way.sql 2007-05-26 10:24 1.7K phastCons6way.txt.gz 2007-05-26 10:25 23M phastConsElements6way.sql 2007-05-26 10:25 1.4K phastConsElements6way.txt.gz 2007-05-26 10:25 7.0M quality.sql 2008-11-30 12:21 1.7K quality.txt.gz 2008-11-30 12:22 42M refFlat.sql 2020-08-22 14:19 1.7K refFlat.txt.gz 2020-08-22 14:19 19K refGene.sql 2020-08-22 14:19 1.9K refGene.txt.gz 2020-08-22 14:19 21K refSeqAli.sql 2020-03-01 08:08 2.1K refSeqAli.txt.gz 2020-03-01 08:08 22K rmsk.sql 2007-07-26 10:56 1.9K rmsk.txt.gz 2007-07-26 10:58 118M simpleRepeat.sql 2007-05-26 10:27 1.9K simpleRepeat.txt.gz 2007-05-26 10:27 11M tRNAs.sql 2012-04-23 07:43 1.7K tRNAs.txt.gz 2012-04-23 07:43 25K tableDescriptions.sql 2019-07-21 03:43 1.4K tableDescriptions.txt.gz 2019-07-21 03:43 7.3K tableList.sql 2021-05-16 03:05 1.6K tableList.txt.gz 2021-05-16 03:05 4.5K trackDb.sql 2020-10-25 08:15 2.0K trackDb.txt.gz 2020-10-25 08:15 38K wssdCoverage.sql 2007-09-21 12:13 1.3K wssdCoverage.txt.gz 2007-09-21 12:13 32K xenoMrna.sql 2020-08-22 14:19 2.1K xenoMrna.txt.gz 2020-08-22 14:19 306M xenoRefFlat.sql 2020-08-22 14:19 1.7K xenoRefFlat.txt.gz 2020-08-22 14:19 27M xenoRefGene.sql 2020-08-22 14:19 1.9K xenoRefGene.txt.gz 2020-08-22 14:19 30M xenoRefSeqAli.sql 2020-08-22 14:19 2.1K xenoRefSeqAli.txt.gz 2020-08-22 14:19 31M