This directory contains the Dec. 2008 (NHGRI/GTB V17e/felCat4) assembly of the cat genome
(catChrV17e, NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)), as well as repeat annotations and GenBank sequences.

This assembly was produced by the Agencourt Bioscience Corporation and
Hill's Pet Nutrition, Inc.. The mitochondrial genome was sequenced by
Laboratory of Genomic Diversity.

For more information on the cat genome, see the project website:

http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10703
http://www.beckmangenomics.com/
http://www.hillspet.com/
http://home.ncifcrf.gov/ccr/lgd/comparative_genome/catgenome/index_n.asp

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat4
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu
[username: anonymous, password: your email address], then cd to the
directory goldenPath/felCat4/database/. To download multiple files, use
the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)


All the files and tables in this directory are freely usable for any purpose.


      Name                         Last modified      Size  Description
Parent Directory - all_est.sql 2016-05-15 08:37 2.1K all_est.txt.gz 2016-05-15 08:37 40K all_mrna.sql 2020-08-21 18:01 2.1K all_mrna.txt.gz 2020-08-21 18:01 229K augustusGene.sql 2015-07-26 13:23 1.9K augustusGene.txt.gz 2015-07-26 13:23 1.9M bigFiles.sql 2021-05-16 03:09 1.4K bigFiles.txt.gz 2021-05-16 03:09 33 blastHg18KG.sql 2011-07-17 08:58 2.1K blastHg18KG.txt.gz 2011-07-17 08:58 2.8M chainAilMel1.sql 2010-07-30 14:54 1.6K chainAilMel1.txt.gz 2010-07-30 14:54 119M chainAilMel1Link.sql 2010-07-30 15:03 1.5K chainAilMel1Link.txt.gz 2010-07-30 15:06 703M chainCanFam2.sql 2010-07-30 15:13 1.6K chainCanFam2.txt.gz 2010-07-30 15:13 99M chainCanFam2Link.sql 2010-07-30 14:41 1.5K chainCanFam2Link.txt.gz 2010-07-30 14:43 691M chainHg19.sql 2010-07-30 14:55 1.6K chainHg19.txt.gz 2010-07-30 14:55 39M chainHg19Link.sql 2010-07-30 14:32 1.5K chainHg19Link.txt.gz 2010-07-30 14:34 427M chainMm9.sql 2010-07-30 14:53 1.6K chainMm9.txt.gz 2010-07-30 14:53 32M chainMm9Link.sql 2010-07-30 14:59 1.5K chainMm9Link.txt.gz 2010-07-30 15:00 317M chainMonDom5.sql 2010-07-30 14:57 1.6K chainMonDom5.txt.gz 2010-07-30 14:57 27M chainMonDom5Link.sql 2010-07-30 14:38 1.5K chainMonDom5Link.txt.gz 2010-07-30 14:38 161M chromInfo.sql 2010-07-30 14:53 1.3K chromInfo.txt.gz 2010-07-30 14:53 513K cpgIslandExt.sql 2010-07-30 14:51 1.6K cpgIslandExt.txt.gz 2010-07-30 14:52 1.2M cpgIslandExtUnmasked.sql 2014-06-01 12:58 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 12:58 1.4M ctgPos2.sql 2010-07-30 14:53 1.5K ctgPos2.txt.gz 2010-07-30 14:53 6.8K estOrientInfo.sql 2016-05-15 08:37 1.8K estOrientInfo.txt.gz 2016-05-15 08:37 14K extFile.sql 2011-08-07 08:53 1.4K extFile.txt.gz 2011-08-07 08:53 80 gap.sql 2010-07-30 15:15 1.5K gap.txt.gz 2010-07-30 15:15 6.4M gbLoaded.sql 2020-08-21 18:23 1.6K gbLoaded.txt.gz 2020-08-21 18:23 43K gc5Base.sql 2010-07-30 14:56 1.7K gc5Base.txt.gz 2010-07-30 14:57 13M gold.sql 2010-10-24 14:29 1.6K gold.txt.gz 2010-10-24 14:29 9.6M grp.sql 2014-03-02 03:40 1.3K grp.txt.gz 2014-03-02 03:40 208 hgFindSpec.sql 2020-10-25 07:59 1.7K hgFindSpec.txt.gz 2020-10-25 07:59 720 history.sql 2010-07-30 14:57 1.5K history.txt.gz 2010-07-30 14:57 558 intronEst.sql 2016-05-15 08:37 2.1K intronEst.txt.gz 2016-05-15 08:37 18K microsat.sql 2015-08-23 16:18 1.5K microsat.txt.gz 2015-08-23 16:18 956K mrnaOrientInfo.sql 2020-08-21 18:06 1.8K mrnaOrientInfo.txt.gz 2020-08-21 18:06 55K multiz6way.sql 2011-08-07 08:53 1.5K multiz6way.txt.gz 2011-08-07 08:53 88M multiz6wayFrames.sql 2011-08-07 08:53 1.7K multiz6wayFrames.txt.gz 2011-08-07 08:53 9.2M multiz6waySummary.sql 2011-08-07 08:54 1.5K multiz6waySummary.txt.gz 2011-08-07 08:54 12M nestedRepeats.sql 2010-07-30 15:15 1.9K nestedRepeats.txt.gz 2010-07-30 15:15 11M netAilMel1.sql 2010-07-30 14:40 2.0K netAilMel1.txt.gz 2010-07-30 14:40 58M netCanFam2.sql 2010-07-30 14:58 2.0K netCanFam2.txt.gz 2010-07-30 14:58 61M netHg19.sql 2010-07-30 14:55 2.0K netHg19.txt.gz 2010-07-30 14:56 60M netMm9.sql 2010-07-30 15:12 2.0K netMm9.txt.gz 2010-07-30 15:13 52M netMonDom5.sql 2010-07-30 15:14 2.0K netMonDom5.txt.gz 2010-07-30 15:14 15M nscanGene.sql 2010-11-07 15:10 1.9K nscanGene.txt.gz 2010-11-07 15:10 1.8M nscanPep.sql 2010-11-07 15:10 1.3K nscanPep.txt.gz 2010-11-07 15:10 5.0M phastCons6way.sql 2011-08-07 08:54 1.7K phastCons6way.txt.gz 2011-08-07 08:54 62M phastConsElements6way.sql 2011-08-07 08:53 1.5K phastConsElements6way.txt.gz 2011-08-07 08:53 10M phyloP6way.sql 2011-08-07 08:52 1.7K phyloP6way.txt.gz 2011-08-07 08:52 64M refFlat.sql 2020-08-21 18:06 1.7K refFlat.txt.gz 2020-08-21 18:06 33K refGene.sql 2020-08-21 18:06 1.9K refGene.txt.gz 2020-08-21 18:06 38K refSeqAli.sql 2020-08-21 18:10 2.1K refSeqAli.txt.gz 2020-08-21 18:10 40K rmsk.sql 2010-07-30 15:15 1.8K rmsk.txt.gz 2010-07-30 15:15 101M simpleRepeat.sql 2010-07-30 14:53 1.9K simpleRepeat.txt.gz 2010-07-30 14:53 18M tRNAs.sql 2012-04-23 00:03 1.7K tRNAs.txt.gz 2012-04-23 00:03 85K tableDescriptions.sql 2019-07-21 03:41 1.4K tableDescriptions.txt.gz 2019-07-21 03:41 6.1K tableList.sql 2021-05-16 03:09 1.6K tableList.txt.gz 2021-05-16 03:09 3.6K trackDb.sql 2020-10-25 07:59 2.0K trackDb.txt.gz 2020-10-25 07:59 35K xenoMrna.sql 2016-02-21 15:39 2.1K xenoMrna.txt.gz 2016-02-21 15:40 296M xenoRefFlat.sql 2020-08-21 18:06 1.7K xenoRefFlat.txt.gz 2020-08-21 18:06 33M xenoRefGene.sql 2020-08-21 18:06 1.9K xenoRefGene.txt.gz 2020-08-21 18:06 36M xenoRefSeqAli.sql 2020-08-21 18:10 2.1K xenoRefSeqAli.txt.gz 2020-08-21 18:10 36M