This directory contains the Dec. 2008 (NHGRI/GTB V17e/felCat4) assembly of the cat genome
(catChrV17e, NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)), as well as repeat annotations and GenBank sequences.
This assembly was produced by the Agencourt Bioscience Corporation and
Hill's Pet Nutrition, Inc.. The mitochondrial genome was sequenced by
Laboratory of Genomic Diversity.
For more information on the cat genome, see the project website:
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10703
http://www.beckmangenomics.com/
http://www.hillspet.com/
http://home.ncifcrf.gov/ccr/lgd/comparative_genome/catgenome/index_n.asp
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat4
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu
[username: anonymous, password: your email address], then cd to the
directory goldenPath/felCat4/database/. To download multiple files, use
the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
chainHg19Link.sql 2010-07-30 14:32 1.5K
chainHg19Link.txt.gz 2010-07-30 14:34 427M
chainMonDom5Link.sql 2010-07-30 14:38 1.5K
chainMonDom5Link.txt.gz 2010-07-30 14:38 161M
netAilMel1.sql 2010-07-30 14:40 2.0K
netAilMel1.txt.gz 2010-07-30 14:40 58M
chainCanFam2Link.sql 2010-07-30 14:41 1.5K
chainCanFam2Link.txt.gz 2010-07-30 14:43 691M
cpgIslandExt.sql 2010-07-30 14:51 1.6K
cpgIslandExt.txt.gz 2010-07-30 14:52 1.2M
ctgPos2.sql 2010-07-30 14:53 1.5K
ctgPos2.txt.gz 2010-07-30 14:53 6.8K
simpleRepeat.sql 2010-07-30 14:53 1.9K
simpleRepeat.txt.gz 2010-07-30 14:53 18M
chromInfo.sql 2010-07-30 14:53 1.3K
chromInfo.txt.gz 2010-07-30 14:53 513K
chainMm9.sql 2010-07-30 14:53 1.6K
chainMm9.txt.gz 2010-07-30 14:53 32M
chainAilMel1.sql 2010-07-30 14:54 1.6K
chainAilMel1.txt.gz 2010-07-30 14:54 119M
chainHg19.sql 2010-07-30 14:55 1.6K
chainHg19.txt.gz 2010-07-30 14:55 39M
netHg19.sql 2010-07-30 14:55 2.0K
netHg19.txt.gz 2010-07-30 14:56 60M
gc5Base.sql 2010-07-30 14:56 1.7K
gc5Base.txt.gz 2010-07-30 14:57 13M
chainMonDom5.sql 2010-07-30 14:57 1.6K
chainMonDom5.txt.gz 2010-07-30 14:57 27M
history.sql 2010-07-30 14:57 1.5K
history.txt.gz 2010-07-30 14:57 558
netCanFam2.sql 2010-07-30 14:58 2.0K
netCanFam2.txt.gz 2010-07-30 14:58 61M
chainMm9Link.sql 2010-07-30 14:59 1.5K
chainMm9Link.txt.gz 2010-07-30 15:00 317M
chainAilMel1Link.sql 2010-07-30 15:03 1.5K
chainAilMel1Link.txt.gz 2010-07-30 15:06 703M
netMm9.sql 2010-07-30 15:12 2.0K
netMm9.txt.gz 2010-07-30 15:13 52M
chainCanFam2.sql 2010-07-30 15:13 1.6K
chainCanFam2.txt.gz 2010-07-30 15:13 99M
netMonDom5.sql 2010-07-30 15:14 2.0K
netMonDom5.txt.gz 2010-07-30 15:14 15M
nestedRepeats.sql 2010-07-30 15:15 1.9K
nestedRepeats.txt.gz 2010-07-30 15:15 11M
gap.sql 2010-07-30 15:15 1.5K
gap.txt.gz 2010-07-30 15:15 6.4M
rmsk.sql 2010-07-30 15:15 1.8K
rmsk.txt.gz 2010-07-30 15:15 101M
gold.sql 2010-10-24 14:29 1.6K
gold.txt.gz 2010-10-24 14:29 9.6M
nscanGene.sql 2010-11-07 15:10 1.9K
nscanGene.txt.gz 2010-11-07 15:10 1.8M
nscanPep.sql 2010-11-07 15:10 1.3K
nscanPep.txt.gz 2010-11-07 15:10 5.0M
blastHg18KG.sql 2011-07-17 08:58 2.1K
blastHg18KG.txt.gz 2011-07-17 08:58 2.8M
phyloP6way.sql 2011-08-07 08:52 1.7K
phyloP6way.txt.gz 2011-08-07 08:52 64M
multiz6wayFrames.sql 2011-08-07 08:53 1.7K
multiz6wayFrames.txt.gz 2011-08-07 08:53 9.2M
extFile.sql 2011-08-07 08:53 1.4K
extFile.txt.gz 2011-08-07 08:53 80
phastConsElements6way.sql 2011-08-07 08:53 1.5K
phastConsElements6way.txt.gz 2011-08-07 08:53 10M
multiz6way.sql 2011-08-07 08:53 1.5K
multiz6way.txt.gz 2011-08-07 08:53 88M
phastCons6way.sql 2011-08-07 08:54 1.7K
phastCons6way.txt.gz 2011-08-07 08:54 62M
multiz6waySummary.sql 2011-08-07 08:54 1.5K
multiz6waySummary.txt.gz 2011-08-07 08:54 12M
tRNAs.sql 2012-04-23 00:03 1.7K
tRNAs.txt.gz 2012-04-23 00:03 85K
grp.sql 2014-03-02 03:40 1.3K
grp.txt.gz 2014-03-02 03:40 208
cpgIslandExtUnmasked.sql 2014-06-01 12:58 1.7K
cpgIslandExtUnmasked.txt.gz 2014-06-01 12:58 1.4M
augustusGene.sql 2015-07-26 13:23 1.9K
augustusGene.txt.gz 2015-07-26 13:23 1.9M
microsat.sql 2015-08-23 16:18 1.5K
microsat.txt.gz 2015-08-23 16:18 956K
xenoMrna.sql 2016-02-21 15:39 2.1K
xenoMrna.txt.gz 2016-02-21 15:40 296M
all_est.sql 2016-05-15 08:37 2.1K
all_est.txt.gz 2016-05-15 08:37 40K
estOrientInfo.sql 2016-05-15 08:37 1.8K
estOrientInfo.txt.gz 2016-05-15 08:37 14K
intronEst.sql 2016-05-15 08:37 2.1K
intronEst.txt.gz 2016-05-15 08:37 18K
all_mrna.sql 2020-08-21 18:01 2.1K
all_mrna.txt.gz 2020-08-21 18:01 229K
refGene.sql 2020-08-21 18:06 1.9K
refGene.txt.gz 2020-08-21 18:06 38K
refFlat.sql 2020-08-21 18:06 1.7K
refFlat.txt.gz 2020-08-21 18:06 33K
xenoRefGene.sql 2020-08-21 18:06 2.0K
xenoRefGene.txt.gz 2020-08-21 18:06 36M
xenoRefFlat.sql 2020-08-21 18:06 1.7K
xenoRefFlat.txt.gz 2020-08-21 18:06 33M
mrnaOrientInfo.sql 2020-08-21 18:06 1.8K
mrnaOrientInfo.txt.gz 2020-08-21 18:06 55K
refSeqAli.sql 2020-08-21 18:10 2.1K
refSeqAli.txt.gz 2020-08-21 18:10 40K
xenoRefSeqAli.sql 2020-08-21 18:10 2.1K
xenoRefSeqAli.txt.gz 2020-08-21 18:10 36M
gbLoaded.sql 2020-08-21 18:23 1.6K
gbLoaded.txt.gz 2020-08-21 18:23 43K
trackDb_pushedout.sql 2021-12-27 12:20 2.1K
trackDb_pushedout.txt.gz 2021-12-27 12:20 38K
hgFindSpec_pushedout.sql 2021-12-27 12:20 1.8K
hgFindSpec_pushedout.txt.gz 2021-12-27 12:20 730
trackDb.sql 2023-03-28 13:49 2.1K
trackDb.txt.gz 2023-03-28 13:49 38K
hgFindSpec.sql 2023-03-28 13:49 1.8K
hgFindSpec.txt.gz 2023-03-28 13:49 768
tableDescriptions.sql 2024-04-13 02:03 1.5K
tableDescriptions.txt.gz 2024-04-13 02:03 6.2K
tableList.sql 2024-04-14 03:34 1.6K
tableList.txt.gz 2024-04-14 03:34 3.8K
bigFiles.sql 2024-04-14 03:34 1.4K
bigFiles.txt.gz 2024-04-14 03:34 33