This directory contains a dump of the UCSC genome annotation database for the
    Aug. 2011 (CHO K1 cell line/criGriChoV1) assembly of the chinese hamster genome
    (criGriChoV1, Beijing Genomics Institute) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    http://www.ncbi.nlm.nih.gov/genome/2791
    http://www.ncbi.nlm.nih.gov/genome/assembly/309608
    http://www.ncbi.nlm.nih.gov/bioproject/69991

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=criGriChoV1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/criGriChoV1/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql criGriChoV1 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql criGriChoV1 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

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GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - crisprTargets.txt.gz 2017-11-06 19:32 65 gc5BaseBw.txt.gz 2017-11-06 19:32 70 ncbiRefSeqOther.txt.gz 2021-02-10 16:42 79 extNcbiRefSeq.txt.gz 2021-02-10 16:42 95 bigFiles.txt.gz 2021-06-06 11:22 120 grp.txt.gz 2017-11-06 19:32 213 estOrientInfo.txt.gz 2017-11-06 19:33 269 intronEst.txt.gz 2017-11-06 19:33 557 all_est.txt.gz 2017-11-06 19:01 783 history.txt.gz 2017-11-06 19:33 848 hgFindSpec.txt.gz 2021-03-05 10:48 1.2K gc5BaseBw.sql 2017-11-06 19:32 1.3K crisprTargets.sql 2017-11-06 19:32 1.3K ncbiRefSeqOther.sql 2021-02-10 16:42 1.3K ensPep.sql 2020-08-31 15:51 1.3K grp.sql 2017-11-06 19:32 1.4K ensemblSource.sql 2020-08-31 15:51 1.4K ncbiRefSeqCds.sql 2021-02-10 16:42 1.4K bigFiles.sql 2021-06-06 11:22 1.4K ncbiRefSeqPepTable.sql 2021-02-10 16:42 1.4K ensemblToGeneName.sql 2020-08-31 15:27 1.4K chromInfo.sql 2017-11-06 19:32 1.4K ensGtp.sql 2020-08-31 15:27 1.4K chromAlias.sql 2017-11-06 19:32 1.4K tableDescriptions.sql 2021-01-14 06:34 1.4K ucscToINSDC.sql 2017-11-06 19:33 1.4K ucscToRefSeq.sql 2017-11-06 19:33 1.4K extNcbiRefSeq.sql 2021-02-10 16:42 1.5K microsat.sql 2017-11-06 19:01 1.5K locusName.sql 2017-11-06 19:33 1.5K crisprRanges.sql 2017-11-06 19:32 1.5K windowmaskerSdust.sql 2017-11-06 19:33 1.5K cytoBandIdeo.sql 2017-11-06 19:32 1.5K chainHg38Link.sql 2017-11-06 19:23 1.5K chainMm10Link.sql 2017-11-06 19:27 1.5K chainCriGri1Link.sql 2017-11-06 19:04 1.6K tableList.sql 2021-06-06 11:22 1.6K seqNcbiRefSeq.sql 2021-02-10 16:42 1.6K history.sql 2017-11-06 19:33 1.6K gbLoaded.sql 2020-08-21 07:48 1.6K gap.sql 2017-11-06 19:04 1.6K gold.sql 2017-11-06 19:32 1.7K genscan.sql 2017-11-06 19:32 1.7K cpgIslandExt.sql 2017-11-06 19:32 1.7K chainHg38.sql 2017-11-06 19:22 1.7K chainMm10.sql 2017-11-06 19:26 1.7K refFlat.sql 2020-08-21 07:31 1.7K chainCriGri1.sql 2017-11-06 19:01 1.7K cpgIslandExtUnmasked.sql 2017-11-06 19:32 1.7K xenoRefFlat.sql 2020-08-21 07:48 1.7K hgFindSpec.sql 2021-03-05 10:48 1.8K estOrientInfo.sql 2017-11-06 19:33 1.8K mrnaOrientInfo.sql 2020-05-07 18:31 1.8K gapOverlap.sql 2017-11-06 19:23 1.8K tandemDups.sql 2017-11-06 19:33 1.8K rmsk.sql 2017-11-06 19:33 1.9K ensGene.sql 2020-08-31 15:27 1.9K refGene.sql 2020-08-21 07:31 1.9K simpleRepeat.sql 2017-11-06 19:33 1.9K nestedRepeats.sql 2017-11-06 19:23 1.9K xenoRefGene.sql 2020-08-21 07:48 1.9K augustusGene.sql 2017-11-06 19:01 1.9K ncbiRefSeq.sql 2021-02-10 16:03 2.0K ncbiRefSeqCurated.sql 2021-02-10 16:03 2.0K ncbiRefSeqPredicted.sql 2021-02-10 16:03 2.0K ncbiRefSeqLink.sql 2021-02-10 16:03 2.0K trackDb.sql 2021-03-05 10:48 2.1K netHg38.sql 2017-11-06 19:32 2.1K netMm10.sql 2017-11-06 19:32 2.1K netCriGri1.sql 2017-11-06 19:27 2.1K all_est.sql 2017-11-06 19:01 2.1K all_mrna.sql 2018-11-04 06:14 2.1K intronEst.sql 2017-11-06 19:33 2.1K refSeqAli.sql 2020-05-07 18:31 2.1K xenoRefSeqAli.sql 2020-08-21 07:48 2.1K ncbiRefSeqPsl.sql 2021-02-10 16:03 2.1K tableList.txt.gz 2021-06-06 11:22 3.6K gapOverlap.txt.gz 2017-11-06 19:23 6.5K tableDescriptions.txt.gz 2021-01-14 06:34 6.6K gbLoaded.txt.gz 2020-08-21 07:48 32K refFlat.txt.gz 2020-08-21 07:31 35K trackDb.txt.gz 2021-03-05 10:48 38K refGene.txt.gz 2020-08-21 07:31 39K ncbiRefSeqCurated.txt.gz 2021-02-10 16:03 40K refSeqAli.txt.gz 2020-05-07 18:31 42K ensemblSource.txt.gz 2020-08-31 15:51 86K ensemblToGeneName.txt.gz 2020-08-31 15:27 156K cpgIslandExt.txt.gz 2017-11-06 19:32 226K ncbiRefSeqCds.txt.gz 2021-02-10 16:42 256K cpgIslandExtUnmasked.txt.gz 2017-11-06 19:32 269K cytoBandIdeo.txt.gz 2017-11-06 19:32 283K chromInfo.txt.gz 2017-11-06 19:32 308K ensGtp.txt.gz 2020-08-31 15:27 351K ucscToINSDC.txt.gz 2017-11-06 19:33 532K ucscToRefSeq.txt.gz 2017-11-06 19:33 539K seqNcbiRefSeq.txt.gz 2021-02-10 16:42 696K mrnaOrientInfo.txt.gz 2020-05-07 18:31 796K chromAlias.txt.gz 2017-11-06 19:32 1.0M ncbiRefSeqLink.txt.gz 2021-02-10 16:03 1.4M augustusGene.txt.gz 2017-11-06 19:01 1.6M genscan.txt.gz 2017-11-06 19:32 1.8M gap.txt.gz 2017-11-06 19:04 1.9M crisprRanges.txt.gz 2017-11-06 19:32 2.0M microsat.txt.gz 2017-11-06 19:01 2.0M ensGene.txt.gz 2020-08-31 15:27 2.3M ncbiRefSeqPredicted.txt.gz 2021-02-10 16:03 2.6M ncbiRefSeq.txt.gz 2021-02-10 16:03 2.7M all_mrna.txt.gz 2018-11-04 06:14 2.8M gold.txt.gz 2017-11-06 19:32 3.3M ncbiRefSeqPsl.txt.gz 2021-02-10 16:03 3.3M locusName.txt.gz 2017-11-06 19:33 3.4M ensPep.txt.gz 2020-08-31 15:51 6.0M nestedRepeats.txt.gz 2017-11-06 19:23 8.8M tandemDups.txt.gz 2017-11-06 19:33 8.8M ncbiRefSeqPepTable.txt.gz 2021-02-10 16:42 9.2M netCriGri1.txt.gz 2017-11-06 19:27 16M simpleRepeat.txt.gz 2017-11-06 19:33 25M xenoRefFlat.txt.gz 2020-08-21 07:48 34M xenoRefSeqAli.txt.gz 2020-08-21 07:48 36M xenoRefGene.txt.gz 2020-08-21 07:48 37M netHg38.txt.gz 2017-11-06 19:32 51M netMm10.txt.gz 2017-11-06 19:32 73M rmsk.txt.gz 2017-11-06 19:33 106M chainHg38.txt.gz 2017-11-06 19:23 117M windowmaskerSdust.txt.gz 2017-11-06 19:33 125M chainMm10.txt.gz 2017-11-06 19:26 146M chainHg38Link.txt.gz 2017-11-06 19:24 616M chainCriGri1.txt.gz 2017-11-06 19:01 776M chainMm10Link.txt.gz 2017-11-06 19:28 1.0G chainCriGri1Link.txt.gz 2017-11-06 19:09 3.6G