This directory contains a dump of the UCSC genome annotation database for the
    Aug. 2011 (CHO K1 cell line/criGriChoV1) assembly of the chinese hamster genome
    (criGriChoV1, Beijing Genomics Institute) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    http://www.ncbi.nlm.nih.gov/genome/2791
    http://www.ncbi.nlm.nih.gov/genome/assembly/309608
    http://www.ncbi.nlm.nih.gov/bioproject/69991

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=criGriChoV1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/criGriChoV1/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql criGriChoV1 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql criGriChoV1 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - chainCriGri1Link.txt.gz 2017-11-06 19:09 3.6G chainMm10Link.txt.gz 2017-11-06 19:28 1.0G chainCriGri1.txt.gz 2017-11-06 19:01 776M chainHg38Link.txt.gz 2017-11-06 19:24 616M chainMm10.txt.gz 2017-11-06 19:26 146M windowmaskerSdust.txt.gz 2017-11-06 19:33 125M chainHg38.txt.gz 2017-11-06 19:23 117M rmsk.txt.gz 2017-11-06 19:33 106M netMm10.txt.gz 2017-11-06 19:32 73M netHg38.txt.gz 2017-11-06 19:32 51M xenoRefGene.txt.gz 2020-08-21 07:48 37M xenoRefSeqAli.txt.gz 2020-08-21 07:48 36M xenoRefFlat.txt.gz 2020-08-21 07:48 34M simpleRepeat.txt.gz 2017-11-06 19:33 25M netCriGri1.txt.gz 2017-11-06 19:27 16M ncbiRefSeqPepTable.txt.gz 2021-02-10 16:42 9.2M tandemDups.txt.gz 2017-11-06 19:33 8.8M nestedRepeats.txt.gz 2017-11-06 19:23 8.8M ensPep.txt.gz 2021-05-25 14:27 6.0M locusName.txt.gz 2017-11-06 19:33 3.4M ncbiRefSeqPsl.txt.gz 2021-02-10 16:03 3.3M gold.txt.gz 2017-11-06 19:32 3.3M all_mrna.txt.gz 2018-11-04 06:14 2.8M ncbiRefSeq.txt.gz 2021-02-10 16:03 2.7M ncbiRefSeqPredicted.txt.gz 2021-02-10 16:03 2.6M ensGene.txt.gz 2021-05-25 14:26 2.3M microsat.txt.gz 2017-11-06 19:01 2.0M crisprRanges.txt.gz 2017-11-06 19:32 2.0M gap.txt.gz 2017-11-06 19:04 1.9M genscan.txt.gz 2017-11-06 19:32 1.8M augustusGene.txt.gz 2017-11-06 19:01 1.6M ncbiRefSeqLink.txt.gz 2021-02-10 16:03 1.4M chromAlias.txt.gz 2017-11-06 19:32 1.0M mrnaOrientInfo.txt.gz 2020-05-07 18:31 796K seqNcbiRefSeq.txt.gz 2021-02-10 16:42 696K ucscToRefSeq.txt.gz 2017-11-06 19:33 539K ucscToINSDC.txt.gz 2017-11-06 19:33 532K ensGtp.txt.gz 2021-05-25 14:26 345K chromInfo.txt.gz 2017-11-06 19:32 308K cytoBandIdeo.txt.gz 2017-11-06 19:32 283K cpgIslandExtUnmasked.txt.gz 2017-11-06 19:32 269K ncbiRefSeqCds.txt.gz 2021-02-10 16:42 256K cpgIslandExt.txt.gz 2017-11-06 19:32 226K ensemblSource.txt.gz 2021-05-25 14:27 86K refSeqAli.txt.gz 2020-05-07 18:31 42K trackDb_pushedout.txt.gz 2023-12-05 13:52 41K trackDb.txt.gz 2023-12-05 13:52 41K ncbiRefSeqCurated.txt.gz 2021-02-10 16:03 40K refGene.txt.gz 2020-08-21 07:31 39K refFlat.txt.gz 2020-08-21 07:31 35K gbLoaded.txt.gz 2020-08-21 07:48 32K ensemblToGeneName.txt.gz 2021-05-25 14:26 14K tableDescriptions.txt.gz 2024-03-23 02:03 6.7K gapOverlap.txt.gz 2017-11-06 19:23 6.5K tableList.txt.gz 2024-03-24 03:08 3.7K xenoRefSeqAli.sql 2020-08-21 07:48 2.2K ncbiRefSeqPsl.sql 2021-02-10 16:03 2.1K refSeqAli.sql 2020-05-07 18:31 2.1K intronEst.sql 2017-11-06 19:33 2.1K all_mrna.sql 2018-11-04 06:14 2.1K all_est.sql 2017-11-06 19:01 2.1K netCriGri1.sql 2017-11-06 19:27 2.1K netMm10.sql 2017-11-06 19:32 2.1K netHg38.sql 2017-11-06 19:32 2.1K trackDb_pushedout.sql 2023-12-05 13:52 2.1K trackDb.sql 2023-12-05 13:52 2.1K ncbiRefSeqLink.sql 2021-02-10 16:03 2.0K ncbiRefSeqPredicted.sql 2021-02-10 16:03 2.0K ncbiRefSeqCurated.sql 2021-02-10 16:03 2.0K xenoRefGene.sql 2020-08-21 07:48 2.0K ncbiRefSeq.sql 2021-02-10 16:03 2.0K refGene.sql 2020-08-21 07:31 1.9K ensGene.sql 2021-05-25 14:26 1.9K augustusGene.sql 2017-11-06 19:01 1.9K nestedRepeats.sql 2017-11-06 19:23 1.9K simpleRepeat.sql 2017-11-06 19:33 1.9K rmsk.sql 2017-11-06 19:33 1.9K mrnaOrientInfo.sql 2020-05-07 18:31 1.8K tandemDups.sql 2017-11-06 19:33 1.8K hgFindSpec_pushedout.sql 2023-12-05 13:52 1.8K gapOverlap.sql 2017-11-06 19:23 1.8K estOrientInfo.sql 2017-11-06 19:33 1.8K hgFindSpec.sql 2023-12-05 13:52 1.8K xenoRefFlat.sql 2020-08-21 07:48 1.8K refFlat.sql 2020-08-21 07:31 1.7K cpgIslandExtUnmasked.sql 2017-11-06 19:32 1.7K chainCriGri1.sql 2017-11-06 19:01 1.7K chainMm10.sql 2017-11-06 19:26 1.7K chainHg38.sql 2017-11-06 19:22 1.7K cpgIslandExt.sql 2017-11-06 19:32 1.7K genscan.sql 2017-11-06 19:32 1.7K gold.sql 2017-11-06 19:32 1.7K gbLoaded.sql 2020-08-21 07:48 1.6K gap.sql 2017-11-06 19:04 1.6K history.sql 2017-11-06 19:33 1.6K seqNcbiRefSeq.sql 2021-02-10 16:42 1.6K tableList.sql 2024-03-24 03:08 1.6K chainCriGri1Link.sql 2017-11-06 19:04 1.6K chainMm10Link.sql 2017-11-06 19:27 1.5K chainHg38Link.sql 2017-11-06 19:23 1.5K cytoBandIdeo.sql 2017-11-06 19:32 1.5K windowmaskerSdust.sql 2017-11-06 19:33 1.5K crisprRanges.sql 2017-11-06 19:32 1.5K locusName.sql 2017-11-06 19:33 1.5K microsat.sql 2017-11-06 19:01 1.5K extNcbiRefSeq.sql 2021-02-10 16:42 1.5K ensGtp.sql 2021-05-25 14:26 1.4K ucscToRefSeq.sql 2017-11-06 19:33 1.4K tableDescriptions.sql 2024-03-23 02:03 1.4K ucscToINSDC.sql 2017-11-06 19:33 1.4K chromAlias.sql 2017-11-06 19:32 1.4K ensemblToGeneName.sql 2021-05-25 14:26 1.4K chromInfo.sql 2017-11-06 19:32 1.4K ncbiRefSeqPepTable.sql 2021-02-10 16:42 1.4K bigFiles.sql 2024-03-24 03:08 1.4K ensemblSource.sql 2021-05-25 14:27 1.4K ncbiRefSeqCds.sql 2021-02-10 16:42 1.4K grp.sql 2017-11-06 19:32 1.4K ensPep.sql 2021-05-25 14:27 1.3K ncbiRefSeqOther.sql 2021-02-10 16:42 1.3K crisprTargets.sql 2017-11-06 19:32 1.3K gc5BaseBw.sql 2017-11-06 19:32 1.3K hgFindSpec_pushedout.txt.gz 2023-12-05 13:52 1.2K hgFindSpec.txt.gz 2023-12-05 13:52 1.2K history.txt.gz 2017-11-06 19:33 848 all_est.txt.gz 2017-11-06 19:01 783 intronEst.txt.gz 2017-11-06 19:33 557 estOrientInfo.txt.gz 2017-11-06 19:33 269 grp.txt.gz 2017-11-06 19:32 213 bigFiles.txt.gz 2024-03-24 03:08 120 extNcbiRefSeq.txt.gz 2021-02-10 16:42 95 ncbiRefSeqOther.txt.gz 2021-02-10 16:42 79 gc5BaseBw.txt.gz 2017-11-06 19:32 70 crisprTargets.txt.gz 2017-11-06 19:32 65