This directory contains a dump of the UCSC genome annotation database for the
    Aug. 2011 (CHO K1 cell line/criGriChoV1) assembly of the chinese hamster genome
    (criGriChoV1, Beijing Genomics Institute) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    http://www.ncbi.nlm.nih.gov/genome/2791
    http://www.ncbi.nlm.nih.gov/genome/assembly/309608
    http://www.ncbi.nlm.nih.gov/bioproject/69991

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=criGriChoV1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/criGriChoV1/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql criGriChoV1 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql criGriChoV1 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-08-21 07:48 36M xenoRefSeqAli.sql 2020-08-21 07:48 2.1K xenoRefGene.txt.gz 2020-08-21 07:48 37M xenoRefGene.sql 2020-08-21 07:48 1.9K xenoRefFlat.txt.gz 2020-08-21 07:48 34M xenoRefFlat.sql 2020-08-21 07:48 1.7K windowmaskerSdust.txt.gz 2017-11-06 19:33 125M windowmaskerSdust.sql 2017-11-06 19:33 1.5K ucscToRefSeq.txt.gz 2017-11-06 19:33 539K ucscToRefSeq.sql 2017-11-06 19:33 1.4K ucscToINSDC.txt.gz 2017-11-06 19:33 532K ucscToINSDC.sql 2017-11-06 19:33 1.4K trackDb.txt.gz 2021-03-05 10:48 38K trackDb.sql 2021-03-05 10:48 2.1K tandemDups.txt.gz 2017-11-06 19:33 8.8M tandemDups.sql 2017-11-06 19:33 1.8K tableList.txt.gz 2021-06-06 11:22 3.6K tableList.sql 2021-06-06 11:22 1.6K tableDescriptions.txt.gz 2021-01-14 06:34 6.6K tableDescriptions.sql 2021-01-14 06:34 1.4K simpleRepeat.txt.gz 2017-11-06 19:33 25M simpleRepeat.sql 2017-11-06 19:33 1.9K seqNcbiRefSeq.txt.gz 2021-02-10 16:42 696K seqNcbiRefSeq.sql 2021-02-10 16:42 1.6K rmsk.txt.gz 2017-11-06 19:33 106M rmsk.sql 2017-11-06 19:33 1.9K refSeqAli.txt.gz 2020-05-07 18:31 42K refSeqAli.sql 2020-05-07 18:31 2.1K refGene.txt.gz 2020-08-21 07:31 39K refGene.sql 2020-08-21 07:31 1.9K refFlat.txt.gz 2020-08-21 07:31 35K refFlat.sql 2020-08-21 07:31 1.7K netMm10.txt.gz 2017-11-06 19:32 73M netMm10.sql 2017-11-06 19:32 2.1K netHg38.txt.gz 2017-11-06 19:32 51M netHg38.sql 2017-11-06 19:32 2.1K netCriGri1.txt.gz 2017-11-06 19:27 16M netCriGri1.sql 2017-11-06 19:27 2.1K nestedRepeats.txt.gz 2017-11-06 19:23 8.8M nestedRepeats.sql 2017-11-06 19:23 1.9K ncbiRefSeqPsl.txt.gz 2021-02-10 16:03 3.3M ncbiRefSeqPsl.sql 2021-02-10 16:03 2.1K ncbiRefSeqPredicted.txt.gz 2021-02-10 16:03 2.6M ncbiRefSeqPredicted.sql 2021-02-10 16:03 2.0K ncbiRefSeqPepTable.txt.gz 2021-02-10 16:42 9.2M ncbiRefSeqPepTable.sql 2021-02-10 16:42 1.4K ncbiRefSeqOther.txt.gz 2021-02-10 16:42 79 ncbiRefSeqOther.sql 2021-02-10 16:42 1.3K ncbiRefSeqLink.txt.gz 2021-02-10 16:03 1.4M ncbiRefSeqLink.sql 2021-02-10 16:03 2.0K ncbiRefSeqCurated.txt.gz 2021-02-10 16:03 40K ncbiRefSeqCurated.sql 2021-02-10 16:03 2.0K ncbiRefSeqCds.txt.gz 2021-02-10 16:42 256K ncbiRefSeqCds.sql 2021-02-10 16:42 1.4K ncbiRefSeq.txt.gz 2021-02-10 16:03 2.7M ncbiRefSeq.sql 2021-02-10 16:03 2.0K mrnaOrientInfo.txt.gz 2020-05-07 18:31 796K mrnaOrientInfo.sql 2020-05-07 18:31 1.8K microsat.txt.gz 2017-11-06 19:01 2.0M microsat.sql 2017-11-06 19:01 1.5K locusName.txt.gz 2017-11-06 19:33 3.4M locusName.sql 2017-11-06 19:33 1.5K intronEst.txt.gz 2017-11-06 19:33 557 intronEst.sql 2017-11-06 19:33 2.1K history.txt.gz 2017-11-06 19:33 848 history.sql 2017-11-06 19:33 1.6K hgFindSpec.txt.gz 2021-03-05 10:48 1.2K hgFindSpec.sql 2021-03-05 10:48 1.8K grp.txt.gz 2017-11-06 19:32 213 grp.sql 2017-11-06 19:32 1.4K gold.txt.gz 2017-11-06 19:32 3.3M gold.sql 2017-11-06 19:32 1.7K genscan.txt.gz 2017-11-06 19:32 1.8M genscan.sql 2017-11-06 19:32 1.7K gc5BaseBw.txt.gz 2017-11-06 19:32 70 gc5BaseBw.sql 2017-11-06 19:32 1.3K gbLoaded.txt.gz 2020-08-21 07:48 32K gbLoaded.sql 2020-08-21 07:48 1.6K gapOverlap.txt.gz 2017-11-06 19:23 6.5K gapOverlap.sql 2017-11-06 19:23 1.8K gap.txt.gz 2017-11-06 19:04 1.9M gap.sql 2017-11-06 19:04 1.6K extNcbiRefSeq.txt.gz 2021-02-10 16:42 95 extNcbiRefSeq.sql 2021-02-10 16:42 1.5K estOrientInfo.txt.gz 2017-11-06 19:33 269 estOrientInfo.sql 2017-11-06 19:33 1.8K ensemblToGeneName.txt.gz 2020-08-31 15:27 156K ensemblToGeneName.sql 2020-08-31 15:27 1.4K ensemblSource.txt.gz 2020-08-31 15:51 86K ensemblSource.sql 2020-08-31 15:51 1.4K ensPep.txt.gz 2020-08-31 15:51 6.0M ensPep.sql 2020-08-31 15:51 1.3K ensGtp.txt.gz 2020-08-31 15:27 351K ensGtp.sql 2020-08-31 15:27 1.4K ensGene.txt.gz 2020-08-31 15:27 2.3M ensGene.sql 2020-08-31 15:27 1.9K cytoBandIdeo.txt.gz 2017-11-06 19:32 283K cytoBandIdeo.sql 2017-11-06 19:32 1.5K crisprTargets.txt.gz 2017-11-06 19:32 65 crisprTargets.sql 2017-11-06 19:32 1.3K crisprRanges.txt.gz 2017-11-06 19:32 2.0M crisprRanges.sql 2017-11-06 19:32 1.5K cpgIslandExtUnmasked.txt.gz 2017-11-06 19:32 269K cpgIslandExtUnmasked.sql 2017-11-06 19:32 1.7K cpgIslandExt.txt.gz 2017-11-06 19:32 226K cpgIslandExt.sql 2017-11-06 19:32 1.7K chromInfo.txt.gz 2017-11-06 19:32 308K chromInfo.sql 2017-11-06 19:32 1.4K chromAlias.txt.gz 2017-11-06 19:32 1.0M chromAlias.sql 2017-11-06 19:32 1.4K chainMm10Link.txt.gz 2017-11-06 19:28 1.0G chainMm10Link.sql 2017-11-06 19:27 1.5K chainMm10.txt.gz 2017-11-06 19:26 146M chainMm10.sql 2017-11-06 19:26 1.7K chainHg38Link.txt.gz 2017-11-06 19:24 616M chainHg38Link.sql 2017-11-06 19:23 1.5K chainHg38.txt.gz 2017-11-06 19:23 117M chainHg38.sql 2017-11-06 19:22 1.7K chainCriGri1Link.txt.gz 2017-11-06 19:09 3.6G chainCriGri1Link.sql 2017-11-06 19:04 1.6K chainCriGri1.txt.gz 2017-11-06 19:01 776M chainCriGri1.sql 2017-11-06 19:01 1.7K bigFiles.txt.gz 2021-06-06 11:22 120 bigFiles.sql 2021-06-06 11:22 1.4K augustusGene.txt.gz 2017-11-06 19:01 1.6M augustusGene.sql 2017-11-06 19:01 1.9K all_mrna.txt.gz 2018-11-04 06:14 2.8M all_mrna.sql 2018-11-04 06:14 2.1K all_est.txt.gz 2017-11-06 19:01 783 all_est.sql 2017-11-06 19:01 2.1K