This directory contains a dump of the UCSC genome annotation database for
the Jan. 2007 assembly of the C. brenneri genome (UCSC version caePb1, 
WUSTL School of Medicine GSC version 4.0). The annotations were generated by 
UCSC and collaborators worldwide.

Various strains of this Caenorhabditis are named Caenorhabditis n. sp. 4.
PB2801,
LKC28, CB5161, SB129, SB280.

This assembly was produced by the Genome Sequencing Center at
the Washington University School of Medicine in St. Louis (WUSTL).
For more information on the C. brenneri genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis%20brenneri.

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=caePb1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/caePb1/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

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The C. brenneri sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
      Name                          Last modified      Size  Description
Parent Directory - all_mrna.sql 2016-06-05 09:09 2.1K all_mrna.txt.gz 2016-06-05 09:09 9.8K augustusGene.sql 2015-07-26 10:34 1.9K augustusGene.txt.gz 2015-07-26 10:34 2.2M bigFiles.sql 2021-07-25 03:06 1.4K bigFiles.txt.gz 2021-07-25 03:06 33 blastCe4SG.sql 2007-08-02 11:27 2.1K blastCe4SG.txt.gz 2007-08-02 11:27 2.2M chrUn_chainCaeRem2.sql 2007-08-04 10:35 1.7K chrUn_chainCaeRem2.txt.gz 2007-08-04 10:38 200M chrUn_chainCaeRem2Link.sql 2007-08-03 14:24 1.4K chrUn_chainCaeRem2Link.txt.gz 2007-08-03 14:33 474M chrUn_chainCb3.sql 2007-08-03 14:41 1.7K chrUn_chainCb3.txt.gz 2007-08-03 14:41 5.2M chrUn_chainCb3Link.sql 2007-08-03 14:41 1.4K chrUn_chainCb3Link.txt.gz 2007-08-03 14:42 27M chrUn_chainCe4.sql 2007-08-03 14:42 1.7K chrUn_chainCe4.txt.gz 2007-08-03 14:47 188M chrUn_chainCe4Link.sql 2007-08-03 14:50 1.4K chrUn_chainCe4Link.txt.gz 2007-08-03 14:55 295M chrUn_chainPriPac1.sql 2007-08-03 14:59 1.7K chrUn_chainPriPac1.txt.gz 2007-08-03 15:00 30M chrUn_chainPriPac1Link.sql 2007-08-03 15:00 1.4K chrUn_chainPriPac1Link.txt.gz 2007-08-03 15:01 55M chrUn_gap.sql 2007-08-03 15:02 1.5K chrUn_gap.txt.gz 2007-08-03 15:02 379K chrUn_gold.sql 2007-08-03 15:02 1.6K chrUn_gold.txt.gz 2007-08-03 15:02 178K chrUn_rmsk.sql 2007-08-03 15:02 1.9K chrUn_rmsk.txt.gz 2007-08-03 15:02 1.4M chromInfo.sql 2007-08-03 15:02 1.2K chromInfo.txt.gz 2007-08-03 15:02 69 ctgPos2.sql 2007-08-03 15:02 1.4K ctgPos2.txt.gz 2007-08-03 15:02 396K gbLoaded.sql 2020-08-20 23:58 1.6K gbLoaded.txt.gz 2020-08-20 23:58 15K gc5Base.sql 2007-08-03 15:03 1.7K gc5Base.txt.gz 2007-08-03 15:03 881K grp.sql 2014-03-02 03:40 1.4K grp.txt.gz 2014-03-02 03:40 208 hgFindSpec.sql 2021-06-10 16:49 1.8K hgFindSpec.txt.gz 2021-06-10 16:49 589 history.sql 2007-08-03 15:03 1.4K history.txt.gz 2007-08-03 15:03 536 microsat.sql 2015-08-23 10:49 1.5K microsat.txt.gz 2015-08-23 10:49 8.1K mrnaOrientInfo.sql 2016-06-05 09:09 1.8K mrnaOrientInfo.txt.gz 2016-06-05 09:09 3.3K netCaeRem2.sql 2007-08-03 15:04 2.2K netCaeRem2.txt.gz 2007-08-03 15:04 8.1M netCb3.sql 2007-08-03 15:04 2.2K netCb3.txt.gz 2007-08-03 15:04 4.8M netCe4.sql 2007-08-03 15:04 2.2K netCe4.txt.gz 2007-08-03 15:04 6.6M netPriPac1.sql 2007-08-03 15:04 2.2K netPriPac1.txt.gz 2007-08-03 15:04 2.0M quality.sql 2007-08-03 15:04 1.7K quality.txt.gz 2007-08-03 15:04 3.6M simpleRepeat.sql 2007-08-03 15:05 2.0K simpleRepeat.txt.gz 2007-08-03 15:05 1.1M tRNAs.sql 2012-03-18 17:38 1.7K tRNAs.txt.gz 2012-03-18 17:38 25K tableDescriptions.sql 2019-07-21 03:41 1.4K tableDescriptions.txt.gz 2019-07-21 03:41 5.0K tableList.sql 2021-07-25 03:06 1.6K tableList.txt.gz 2021-07-25 03:06 2.5K trackDb.sql 2021-06-10 16:49 2.1K trackDb.txt.gz 2021-06-10 16:49 15K windowmaskerSdust.sql 2007-08-03 15:05 1.3K windowmaskerSdust.txt.gz 2007-08-03 15:05 9.1M xenoMrna.sql 2016-02-21 10:41 2.3K xenoMrna.txt.gz 2016-02-21 10:41 98M xenoRefFlat.sql 2020-08-20 23:58 1.7K xenoRefFlat.txt.gz 2020-08-20 23:58 11M xenoRefGene.sql 2020-08-20 23:56 1.9K xenoRefGene.txt.gz 2020-08-20 23:56 13M xenoRefSeqAli.sql 2020-08-20 23:58 2.1K xenoRefSeqAli.txt.gz 2020-08-20 23:58 14M