This directory contains a dump of the UCSC genome annotation database for
the Jan. 2007 assembly of the C. brenneri genome (UCSC version caePb1,
WUSTL School of Medicine GSC version 4.0). The annotations were generated by
UCSC and collaborators worldwide.
Various strains of this Caenorhabditis are named Caenorhabditis n. sp. 4.
PB2801,
LKC28, CB5161, SB129, SB280.
This assembly was produced by the Genome Sequencing Center at
the Washington University School of Medicine in St. Louis (WUSTL).
For more information on the C. brenneri genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis%20brenneri.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=caePb1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/caePb1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
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The C. brenneri sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-04-14 03:16 33
chromInfo.txt.gz 2007-08-03 15:02 69
grp.txt.gz 2014-03-02 03:40 208
history.txt.gz 2007-08-03 15:03 536
hgFindSpec_pushedout.txt.gz 2021-12-27 12:22 599
hgFindSpec.txt.gz 2023-03-28 13:46 638
chromInfo.sql 2007-08-03 15:02 1.2K
windowmaskerSdust.sql 2007-08-03 15:05 1.3K
grp.sql 2014-03-02 03:40 1.4K
bigFiles.sql 2024-04-14 03:16 1.4K
history.sql 2007-08-03 15:03 1.4K
ctgPos2.sql 2007-08-03 15:02 1.4K
chrUn_chainCb3Link.sql 2007-08-03 14:41 1.4K
chrUn_chainCe4Link.sql 2007-08-03 14:50 1.4K
chrUn_chainCaeRem2Link.sql 2007-08-03 14:24 1.4K
chrUn_chainPriPac1Link.sql 2007-08-03 15:00 1.4K
tableDescriptions.sql 2024-04-13 02:03 1.5K
microsat.sql 2015-08-23 10:49 1.5K
chrUn_gap.sql 2007-08-03 15:02 1.5K
tableList.sql 2024-04-14 03:16 1.6K
chrUn_gold.sql 2007-08-03 15:02 1.6K
gbLoaded.sql 2020-08-20 23:58 1.6K
chrUn_chainCb3.sql 2007-08-03 14:41 1.7K
chrUn_chainCe4.sql 2007-08-03 14:42 1.7K
chrUn_chainCaeRem2.sql 2007-08-04 10:35 1.7K
chrUn_chainPriPac1.sql 2007-08-03 14:59 1.7K
tRNAs.sql 2012-03-18 17:38 1.7K
gc5Base.sql 2007-08-03 15:03 1.7K
quality.sql 2007-08-03 15:04 1.7K
xenoRefFlat.sql 2020-08-20 23:58 1.7K
hgFindSpec.sql 2023-03-28 13:46 1.8K
mrnaOrientInfo.sql 2016-06-05 09:09 1.8K
hgFindSpec_pushedout.sql 2021-12-27 12:22 1.8K
chrUn_rmsk.sql 2007-08-03 15:02 1.9K
augustusGene.sql 2015-07-26 10:34 1.9K
xenoRefGene.sql 2020-08-20 23:56 2.0K
simpleRepeat.sql 2007-08-03 15:05 2.0K
trackDb.sql 2023-03-28 13:46 2.1K
trackDb_pushedout.sql 2021-12-27 12:22 2.1K
all_mrna.sql 2016-06-05 09:09 2.1K
blastCe4SG.sql 2007-08-02 11:27 2.1K
xenoRefSeqAli.sql 2020-08-20 23:58 2.1K
netCb3.sql 2007-08-03 15:04 2.2K
netCe4.sql 2007-08-03 15:04 2.2K
netCaeRem2.sql 2007-08-03 15:04 2.2K
netPriPac1.sql 2007-08-03 15:04 2.2K
xenoMrna.sql 2016-02-21 10:41 2.3K
tableList.txt.gz 2024-04-14 03:16 2.7K
mrnaOrientInfo.txt.gz 2016-06-05 09:09 3.3K
tableDescriptions.txt.gz 2024-04-13 02:03 5.0K
microsat.txt.gz 2015-08-23 10:49 8.1K
all_mrna.txt.gz 2016-06-05 09:09 9.8K
gbLoaded.txt.gz 2020-08-20 23:58 15K
trackDb_pushedout.txt.gz 2021-12-27 12:22 15K
trackDb.txt.gz 2023-03-28 13:46 15K
tRNAs.txt.gz 2012-03-18 17:38 25K
chrUn_gold.txt.gz 2007-08-03 15:02 178K
chrUn_gap.txt.gz 2007-08-03 15:02 379K
ctgPos2.txt.gz 2007-08-03 15:02 396K
gc5Base.txt.gz 2007-08-03 15:03 881K
simpleRepeat.txt.gz 2007-08-03 15:05 1.1M
chrUn_rmsk.txt.gz 2007-08-03 15:02 1.4M
netPriPac1.txt.gz 2007-08-03 15:04 2.0M
blastCe4SG.txt.gz 2007-08-02 11:27 2.2M
augustusGene.txt.gz 2015-07-26 10:34 2.2M
quality.txt.gz 2007-08-03 15:04 3.6M
netCb3.txt.gz 2007-08-03 15:04 4.8M
chrUn_chainCb3.txt.gz 2007-08-03 14:41 5.2M
netCe4.txt.gz 2007-08-03 15:04 6.6M
netCaeRem2.txt.gz 2007-08-03 15:04 8.1M
windowmaskerSdust.txt.gz 2007-08-03 15:05 9.1M
xenoRefFlat.txt.gz 2020-08-20 23:58 11M
xenoRefGene.txt.gz 2020-08-20 23:56 13M
xenoRefSeqAli.txt.gz 2020-08-20 23:58 14M
chrUn_chainCb3Link.txt.gz 2007-08-03 14:42 27M
chrUn_chainPriPac1.txt.gz 2007-08-03 15:00 30M
chrUn_chainPriPac1Link.txt.gz 2007-08-03 15:01 55M
xenoMrna.txt.gz 2016-02-21 10:41 98M
chrUn_chainCe4.txt.gz 2007-08-03 14:47 188M
chrUn_chainCaeRem2.txt.gz 2007-08-04 10:38 200M
chrUn_chainCe4Link.txt.gz 2007-08-03 14:55 295M
chrUn_chainCaeRem2Link.txt.gz 2007-08-03 14:33 474M