The data files ("UCSC Chain Files") in this directory are property of The
Regents of the University of California, and made available free for
non-commercial use by Independent Researchers and Nonprofit Organizations. Any
other use of UCSC Chain Files requires a commercial license, for which users
should contact genomebrowser@ucsc.edu. As used herein, "Independent
Researcher" means an individual who is autonomous with respect to the
research activities for which he or she uses the UCSC Chain Files (note: such
use does not extend to any use of the UCSC Chain Files at the direction and/or
for the benefit of a for-profit organization); and "Nonprofit
Organization" means a university or other institution of higher education,
or a not-for-profit organization officially recognized or qualified under the
laws of the country in which it is organized or located, or any nonprofit
scientific or educational organization qualified under a federal, state or local
jurisdiction's nonprofit organization statute. Downloading or using UCSC Chain
Files indicates your acceptance of the End User License Agreement (EULA) posted
at "https://genome.ucsc.edu/license/EULA.pdf"; redistribution of UCSC Chain
Files by you must include this README file with these license restrictions, in
the same archive or directory with the chain files.

This directory contains the data files required as input to the
liftOver utility. This tool -- which requires a Linux platform --
allows the mass conversion of coordinates from one assembly to
another. The executable file for the utility can be downloaded from
http://hgdownload.soe.ucsc.edu/admin/exe/

The file names reflect the assembly conversion data contained within
in the format <db1>To<Db2>.over.chain.gz. For example, a file named
hg15ToHg16.over.chain.gz file contains the liftOver data needed to
convert hg15 (Human Build 33) coordinates to hg16 (Human Build 34).
If no file is available for the assembly in which you're interested,
please send a request to the genome mailing list
(genome@soe.ucsc.edu) and we will attempt to provide you with one.

To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.soe.ucsc.edu (user: anonymous),
then cd to goldenPath/hg38/liftOver.  To download multiple files,
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
-------------------------------------------------------
Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/hg38/liftOver/ .
For a single file, e.g. hg38ToHg19.over.chain.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/hg38/liftOver/hg38ToHg19.over.chain.gz .
    (Hg19 is merely an example here, not necessarily existing.)

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/hg38/liftOver/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/hg38/liftOver/hg38ToHg19.over.chain.gz' 
        -O hg38ToHg19.over.chain.gz

To uncompress the *.chain.gz files:
    gunzip <file>.chain.gz
The liftOver utility can read the files in their .gz format,
it is not necessary to uncompress them to use with the liftOver command.

      Name                                Last modified      Size  Description
Parent Directory - md5sum.txt 2022-03-21 20:30 11K hg38ToZonAlb1.over.chain.gz 2015-02-18 17:32 11M hg38ToXipMac1.over.chain.gz 2015-02-06 17:56 4.9M hg38ToXenTro10.over.chain.gz 2021-02-23 10:11 13M hg38ToXenTro9.over.chain.gz 2017-03-30 06:52 10M hg38ToXenTro7.over.chain.gz 2015-02-19 22:44 10M hg38ToXenLae2.over.chain.gz 2017-03-30 07:56 7.6M hg38ToVicPac2.over.chain.gz 2015-04-29 11:55 82M hg38ToTurTru2.over.chain.gz 2017-02-21 19:26 84M hg38ToTupChi1.over.chain.gz 2015-02-19 10:39 82M hg38ToTupBel1.over.chain.gz 2015-03-27 14:12 70M hg38ToTriMan1.over.chain.gz 2015-04-29 14:54 79M hg38ToThaSir1.over.chain.gz 2018-03-13 12:20 8.5M hg38ToTetNig2.over.chain.gz 2015-02-17 23:57 4.3M hg38ToTarSyr2.over.chain.gz 2014-12-12 15:32 84M hg38ToTakFla1.over.chain.gz 2015-02-18 10:59 4.0M hg38ToTaeGut2.over.chain.gz 2015-02-19 21:26 15M hg38ToSusScr11.over.chain.gz 2017-07-31 17:43 86M hg38ToSusScr3.over.chain.gz 2015-04-29 11:32 81M hg38ToSpeTri2.over.chain.gz 2015-04-29 13:05 89M hg38ToSorAra2.over.chain.gz 2015-02-20 00:38 60M hg38ToSarHar1.over.chain.gz 2015-02-14 01:13 31M hg38ToSaiBol1.over.chain.gz 2014-12-13 19:23 55M hg38ToRn7.over.chain.gz 2021-02-04 17:50 70M hg38ToRn6.over.chain.gz 2015-02-14 22:30 69M hg38ToRn5.over.chain.gz 2014-03-01 11:14 68M hg38ToRn4.over.chain.gz 2014-03-01 11:14 66M hg38ToRhiRox1.over.chain.gz 2015-02-23 11:26 41M hg38ToRhiBie1.over.chain.gz 2017-03-23 15:20 41M hg38ToRheMac10.over.chain.gz 2019-07-03 14:15 37M hg38ToRheMac8.over.chain.gz 2016-02-08 12:40 38M hg38ToRheMac3.over.chain.gz 2015-04-09 15:10 37M hg38ToRheMac2.over.chain.gz 2014-07-11 19:23 35M hg38ToPunNye1.over.chain.gz 2015-02-06 18:11 4.4M hg38ToPteVam1.over.chain.gz 2015-04-29 10:47 76M hg38ToPteAle1.over.chain.gz 2015-04-29 12:41 81M hg38ToPseHum1.over.chain.gz 2015-02-19 13:39 12M hg38ToProCoq1.over.chain.gz 2017-09-28 18:30 39M hg38ToPonAbe3.over.chain.gz 2018-03-26 13:55 23M hg38ToPonAbe2.over.chain.gz 2014-09-02 13:55 27M hg38ToPetMar3.over.chain.gz 2018-01-25 11:07 4.9M hg38ToPetMar2.over.chain.gz 2015-02-06 18:05 3.6M hg38ToPelSin1.over.chain.gz 2015-02-14 00:13 14M hg38ToPapAnu4.over.chain.gz 2018-01-09 09:20 42M hg38ToPapAnu3.over.chain.gz 2017-06-22 13:46 42M hg38ToPapAnu2.over.chain.gz 2014-12-13 13:53 39M hg38ToPanTro6.over.chain.gz 2018-03-24 23:05 12M hg38ToPanTro5.over.chain.gz 2016-08-04 01:08 14M hg38ToPanTro4.over.chain.gz 2014-05-27 10:06 14M hg38ToPanTro3.over.chain.gz 2018-01-03 23:41 14M hg38ToPanPan3.over.chain.gz 2020-06-15 10:51 13M hg38ToPanPan2.over.chain.gz 2016-05-24 13:33 15M hg38ToPanPan1.over.chain.gz 2014-12-11 16:48 16M hg38ToPanHod1.over.chain.gz 2015-04-28 07:08 84M hg38ToOviAri4.over.chain.gz 2018-04-26 08:56 83M hg38ToOviAri3.over.chain.gz 2015-04-27 19:49 83M hg38ToOtoGar3.over.chain.gz 2015-02-23 00:51 87M hg38ToOryLat2.over.chain.gz 2015-02-06 09:41 5.0M hg38ToOryCun2.over.chain.gz 2015-04-28 04:52 80M hg38ToOryAfe1.over.chain.gz 2015-04-23 21:56 77M hg38ToOrnAna2.over.chain.gz 2017-02-21 18:13 22M hg38ToOrnAna1.over.chain.gz 2015-02-13 23:37 19M hg38ToOreNil3.over.chain.gz 2017-07-31 14:04 4.8M hg38ToOreNil2.over.chain.gz 2015-02-18 13:56 4.6M hg38ToOrcOrc1.over.chain.gz 2016-06-03 22:03 82M hg38ToOdoRosDiv1.over.chain.gz 2015-04-29 11:12 88M hg38ToOctDeg1.over.chain.gz 2015-04-24 20:40 82M hg38ToOchPri3.over.chain.gz 2015-04-28 02:31 69M hg38ToNomLeu3.over.chain.gz 2014-12-12 19:44 29M hg38ToNeoSch1.over.chain.gz 2017-09-25 20:52 87M hg38ToNeoBri1.over.chain.gz 2015-02-18 12:58 4.4M hg38ToNasLar1.over.chain.gz 2014-12-15 17:05 45M hg38ToMyoLuc2.over.chain.gz 2015-04-28 04:57 70M hg38ToMyoDav1.over.chain.gz 2015-04-28 07:01 73M hg38ToMusFur1.over.chain.gz 2015-04-29 19:01 88M hg38ToMonDom5.over.chain.gz 2014-05-29 11:09 34M hg38ToMm39.over.chain.gz 2020-08-17 15:54 70M hg38ToMm10.over.chain.gz 2015-04-09 17:32 70M hg38ToMicOch1.over.chain.gz 2015-02-14 21:46 69M hg38ToMicMur3.over.chain.gz 2017-03-04 09:21 37M hg38ToMicMur2.over.chain.gz 2015-05-06 11:30 76M hg38ToMicMur1.over.chain.gz 2015-03-17 12:00 67M hg38ToMesAur1.over.chain.gz 2015-02-19 22:02 68M hg38ToMelUnd1.over.chain.gz 2015-02-19 01:14 10M hg38ToMelGal5.over.chain.gz 2017-01-19 16:25 11M hg38ToMelGal1.over.chain.gz 2015-02-13 23:11 10M hg38ToMayZeb1.over.chain.gz 2015-02-07 09:24 4.4M hg38ToManPen1.over.chain.gz 2017-03-16 02:59 80M hg38ToManLeu1.over.chain.gz 2017-09-25 08:44 37M hg38ToMacNem1.over.chain.gz 2017-02-27 13:00 38M hg38ToMacFas5.over.chain.gz 2014-12-14 01:05 39M hg38ToMacEug2.over.chain.gz 2015-02-19 22:55 17M hg38ToLoxAfr3.over.chain.gz 2015-04-29 13:44 81M hg38ToLepWed1.over.chain.gz 2015-04-29 11:05 87M hg38ToLepOcu1.over.chain.gz 2015-02-19 05:23 6.1M hg38ToLatCha1.over.chain.gz 2015-02-19 23:56 7.2M hg38ToJacJac1.over.chain.gz 2015-02-19 21:29 73M hg38ToHg19.over.chain.gz 2013-12-31 17:24 1.2M hg38ToHetGla2.over.chain.gz 2015-04-29 12:55 86M hg38ToHapBur1.over.chain.gz 2015-02-18 12:37 4.4M hg38ToGorGor6.over.chain.gz 2019-11-21 08:19 15M hg38ToGorGor5.over.chain.gz 2016-06-25 02:40 19M hg38ToGorGor4.over.chain.gz 2016-01-06 18:59 16M hg38ToGorGor3.over.chain.gz 2014-12-15 13:00 18M hg38ToGeoFor1.over.chain.gz 2015-02-19 01:33 10M hg38ToGasAcu1.over.chain.gz 2015-02-18 08:29 5.2M hg38ToGalVar1.over.chain.gz 2016-04-26 03:10 85M hg38ToGalGal6.over.chain.gz 2018-10-12 10:57 12M hg38ToGalGal5.over.chain.gz 2016-04-19 16:46 12M hg38ToGalGal4.over.chain.gz 2015-02-13 21:49 11M hg38ToGadMor1.over.chain.gz 2015-02-18 17:19 4.8M hg38ToGCF_003121395.1.over.chain.gz 2021-01-05 17:03 84M hg38ToGCF_002742125.1.over.chain.gz 2021-04-05 15:51 84M hg38ToGCF_001704415.1.over.chain.gz 2021-11-23 19:51 85M hg38ToGCF_000349665.1.over.chain.gz 2021-10-20 00:31 67M hg38ToGCA_013030995.1.over.chain.gz 2022-03-21 20:20 6.5M hg38ToFukDam1.over.chain.gz 2018-01-01 19:56 86M hg38ToFr3.over.chain.gz 2015-02-18 06:17 4.4M hg38ToFicAlb2.over.chain.gz 2015-02-18 23:23 11M hg38ToFicAlb1.over.chain.gz 2018-01-09 07:52 11M hg38ToFelCat9.over.chain.gz 2018-03-15 04:47 89M hg38ToFelCat8.over.chain.gz 2015-04-29 22:16 89M hg38ToFalPer1.over.chain.gz 2015-02-13 21:29 11M hg38ToFalChe1.over.chain.gz 2015-02-13 21:19 11M hg38ToEulMac1.over.chain.gz 2017-10-04 21:47 41M hg38ToEulFla1.over.chain.gz 2017-10-03 16:01 40M hg38ToEriEur2.over.chain.gz 2015-02-19 13:03 55M hg38ToEquCab3.over.chain.gz 2018-05-25 16:55 85M hg38ToEquCab2.over.chain.gz 2015-02-23 11:14 84M hg38ToEptFus1.over.chain.gz 2015-04-24 13:37 71M hg38ToEnhLutNer1.over.chain.gz 2019-12-20 21:36 89M hg38ToEleEdw1.over.chain.gz 2015-02-19 12:11 57M hg38ToEchTel2.over.chain.gz 2015-04-29 14:12 62M hg38ToDipOrd2.over.chain.gz 2018-01-01 19:07 70M hg38ToDasNov3.over.chain.gz 2015-04-29 13:59 85M hg38ToDanRer11.over.chain.gz 2017-06-13 14:42 4.4M hg38ToDanRer10.over.chain.gz 2015-02-08 14:08 9.2M hg38ToCriGriChoV2.over.chain.gz 2018-01-05 17:48 72M hg38ToCriGriChoV1.over.chain.gz 2017-04-13 20:21 70M hg38ToCriGri1.over.chain.gz 2015-02-20 19:28 73M hg38ToConCri1.over.chain.gz 2015-04-29 09:18 74M hg38ToColLiv1.over.chain.gz 2015-02-13 21:43 11M hg38ToColAng1.over.chain.gz 2017-02-27 12:31 37M hg38ToChrPic2.over.chain.gz 2015-02-06 14:31 16M hg38ToChrAsi1.over.chain.gz 2015-02-20 05:23 68M hg38ToChlSab2.over.chain.gz 2014-07-11 19:29 37M hg38ToChiLan1.over.chain.gz 2015-04-28 03:54 87M hg38ToCheMyd1.over.chain.gz 2015-02-06 14:24 15M hg38ToCerSim1.over.chain.gz 2015-02-23 15:38 84M hg38ToCerAty1.over.chain.gz 2017-09-27 11:04 38M hg38ToCebCap1.over.chain.gz 2017-09-28 19:11 50M hg38ToCavPor3.over.chain.gz 2015-04-28 09:18 85M hg38ToCavApe1.over.chain.gz 2018-01-08 21:39 56M hg38ToCasCan1.over.chain.gz 2018-03-20 01:38 89M hg38ToCapHir1.over.chain.gz 2015-04-28 11:44 83M hg38ToCanFam6.over.chain.gz 2021-05-17 21:19 89M hg38ToCanFam5.over.chain.gz 2020-07-30 05:35 90M hg38ToCanFam4.over.chain.gz 2020-04-03 00:23 90M hg38ToCanFam3.over.chain.gz 2015-04-10 01:22 89M hg38ToCamFer1.over.chain.gz 2015-04-24 13:40 81M hg38ToCalJac4.over.chain.gz 2020-09-03 23:02 63M hg38ToCalJac3.over.chain.gz 2014-12-13 15:52 57M hg38ToBosTau9.over.chain.gz 2018-11-08 15:58 83M hg38ToBosTau8.over.chain.gz 2014-10-16 18:24 84M hg38ToBisBis1.over.chain.gz 2017-03-17 21:14 84M hg38ToBalAcu1.over.chain.gz 2018-06-11 17:53 82M hg38ToAstMex1.over.chain.gz 2015-02-18 17:16 5.8M hg38ToAraMac1.over.chain.gz 2015-02-17 18:08 10M hg38ToAquChr2.over.chain.gz 2017-03-16 19:06 13M hg38ToAptMan1.over.chain.gz 2017-02-21 17:07 12M hg38ToApaSpi1.over.chain.gz 2015-02-14 00:01 14M hg38ToAotNan1.over.chain.gz 2017-09-25 15:51 50M hg38ToAnoCar2.over.chain.gz 2015-02-06 14:20 8.4M hg38ToAnaPla1.over.chain.gz 2015-02-13 21:21 9.8M hg38ToAmaVit1.over.chain.gz 2015-02-13 23:20 11M hg38ToAllMis1.over.chain.gz 2015-02-14 00:31 19M hg38ToAilMel1.over.chain.gz 2015-02-12 04:09 77M