This directory contains a dump of the UCSC genome annotation 
database for the Oct. 2006 assembly of the opossum genome (UCSC
version monDom5) from the Broad Institute at MIT and Harvard.

The directory is updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom5
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/monDom5/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

-----------------------------------------------------------
All the tables in this directory are freely usable for any 
purpose. The opossum sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data (The
   Broad Institute) are properly acknowledged. 
3. The centers producing the data reserve the right to publish the 
   initial large-scale analyses of the data set, including large-scale 
   identification of regions of evolutionary conservation and large-scale 
   genomic assembly.  Large-scale refers to regions with size on the order 
   of a chromosome (that is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                         Last modified      Size  Description
Parent Directory - chainRheMac3Link.txt.gz 2012-12-02 18:44 1.3G chainPonAbe2Link.txt.gz 2010-12-10 11:39 1.2G chainHg19Link.txt.gz 2010-12-10 11:28 1.2G chainPanTro3Link.txt.gz 2011-06-12 11:18 1.2G chainNeoSch1Link.txt.gz 2020-07-17 10:30 1.1G chainLoxAfr3Link.txt.gz 2011-11-21 19:15 1.1G chainMm10Link.txt.gz 2013-10-27 18:40 1.1G chainCerSim1Link.txt.gz 2013-01-29 23:28 1.0G chainEquCab2Link.txt.gz 2010-12-10 12:07 1.0G chainOryCun2Link.txt.gz 2010-12-10 11:10 966M chainXenTro9Link.txt.gz 2017-12-14 12:36 809M chainXenTro3Link.txt.gz 2019-06-02 03:23 788M chainBosTau7Link.txt.gz 2012-06-16 19:57 776M chainCalJac3Link.txt.gz 2010-12-10 11:05 758M chainRn6Link.txt.gz 2017-03-27 16:57 749M chainRheMac3.txt.gz 2012-12-02 18:40 559M chainSusScr2Link.txt.gz 2010-12-10 11:46 520M chainPonAbe2.txt.gz 2010-12-10 12:20 430M chainLoxAfr3.txt.gz 2011-11-21 19:09 420M chainPanTro3.txt.gz 2011-06-12 11:25 344M chainHg19.txt.gz 2010-12-10 12:26 340M chainOryCun2.txt.gz 2010-12-10 12:28 337M chainCanFam2Link.txt.gz 2010-12-10 11:01 330M chainOrnAna1Link.txt.gz 2010-12-10 11:49 327M chainNeoSch1.txt.gz 2020-07-17 10:23 318M chainCalJac3.txt.gz 2010-12-10 11:21 272M chainEquCab2.txt.gz 2010-12-10 11:23 254M chainCerSim1.txt.gz 2013-01-29 23:32 253M chainBosTau7.txt.gz 2012-06-16 20:30 250M chainMm39Link.txt.gz 2020-11-25 07:49 240M chainXenTro9.txt.gz 2017-12-14 12:34 230M chainXenTro3.txt.gz 2019-06-02 03:21 223M xenoMrna.txt.gz 2020-08-19 18:14 213M chainAilMel1Link.txt.gz 2010-12-10 12:31 213M windowmaskerSdust.txt.gz 2009-07-20 16:00 204M rmsk.txt.gz 2009-07-20 16:03 199M chainMm10.txt.gz 2013-10-27 18:38 198M chainFelCat4Link.txt.gz 2010-12-10 11:52 165M chainSusScr2.txt.gz 2010-12-10 11:25 153M chainGalGal3Link.txt.gz 2010-12-10 10:58 144M chainOviAri1Link.txt.gz 2011-04-25 09:59 114M chainRn6.txt.gz 2017-03-27 16:46 103M chainDanRer5Link.txt.gz 2010-12-10 12:30 98M multiz9way.txt.gz 2010-12-10 11:22 93M chainOrnAna1.txt.gz 2010-12-10 11:34 88M phastCons9way.txt.gz 2010-12-10 11:03 76M quality.txt.gz 2009-07-20 15:59 64M chainPetMar2Link.txt.gz 2013-01-24 03:47 43M chainMelGal5Link.txt.gz 2017-03-20 09:11 42M chainMm39.txt.gz 2020-11-25 07:47 41M chainGalGal3.txt.gz 2010-12-10 11:53 40M chainCanFam2.txt.gz 2010-12-10 11:51 39M chainMelGal1Link.txt.gz 2011-11-06 14:53 36M netHg19.txt.gz 2010-12-10 11:53 34M netPanTro3.txt.gz 2011-06-12 11:15 34M chainOviAri1.txt.gz 2011-04-25 10:01 33M multiz9waySummary.txt.gz 2010-12-10 11:57 33M chainAilMel1.txt.gz 2010-12-10 11:02 33M netNeoSch1.txt.gz 2020-07-17 10:31 33M netCerSim1.txt.gz 2013-01-29 23:26 29M chainFelCat4.txt.gz 2010-12-10 11:48 28M netEquCab2.txt.gz 2010-12-10 11:57 28M netPonAbe2.txt.gz 2010-12-10 11:23 28M netCanFam2.txt.gz 2010-12-10 11:48 26M simpleRepeat.txt.gz 2009-07-20 16:05 26M xenoRefGene.txt.gz 2020-08-19 18:32 26M xenoRefSeqAli.txt.gz 2020-08-19 18:45 25M netRn6.txt.gz 2017-03-27 17:27 24M netMm10.txt.gz 2013-10-27 18:44 23M netOrnAna1.txt.gz 2010-12-10 11:56 23M xenoRefFlat.txt.gz 2020-08-19 18:32 23M nestedRepeats.txt.gz 2009-07-20 15:57 23M netLoxAfr3.txt.gz 2011-11-21 19:12 22M netAilMel1.txt.gz 2010-12-10 12:33 21M netRheMac3.txt.gz 2012-12-02 18:39 21M netCalJac3.txt.gz 2010-12-10 12:30 21M netBosTau7.txt.gz 2012-06-16 20:26 20M chainDanRer5.txt.gz 2010-12-10 11:02 19M netFelCat4.txt.gz 2010-12-10 11:51 18M multiz9wayFrames.txt.gz 2010-12-10 12:25 18M netOryCun2.txt.gz 2010-12-10 11:03 18M netSusScr2.txt.gz 2010-12-10 11:57 17M netOviAri1.txt.gz 2011-04-25 10:01 16M netMm39.txt.gz 2020-11-25 07:50 15M gc5Base.txt.gz 2009-07-20 16:02 14M chainPetMar2.txt.gz 2013-01-24 03:48 13M nscanPep.txt.gz 2009-07-20 16:05 12M chainMelGal5.txt.gz 2017-03-20 09:11 12M netGalGal3.txt.gz 2010-12-10 11:45 9.3M netDanRer5.txt.gz 2010-12-10 12:33 8.8M netMelGal1.txt.gz 2011-11-06 14:42 8.5M netMelGal5.txt.gz 2017-03-20 09:13 8.5M chainMelGal1.txt.gz 2011-11-06 14:55 7.9M genscanPep.txt.gz 2009-07-20 15:58 7.9M netXenTro9.txt.gz 2017-12-14 12:38 7.8M phastConsElements9way.txt.gz 2010-12-10 11:22 7.8M netXenTro3.txt.gz 2019-06-02 03:26 7.5M ensPep.txt.gz 2019-02-10 03:42 6.4M nscanGene.txt.gz 2009-07-20 16:02 3.6M blastHg18KG.txt.gz 2009-07-20 16:02 3.6M netPetMar2.txt.gz 2013-01-24 03:47 2.8M ensGene.txt.gz 2019-02-10 03:42 2.5M genscan.txt.gz 2009-07-20 15:57 2.3M augustusGene.txt.gz 2015-07-26 16:46 2.0M gold.txt.gz 2009-07-20 16:06 1.3M gap.txt.gz 2009-07-20 15:57 1.0M microsat.txt.gz 2015-08-23 21:56 1.0M cpgIslandExtUnmasked.txt.gz 2014-06-01 17:03 619K cpgIslandExt.txt.gz 2009-07-20 15:58 484K ensGtp.txt.gz 2019-02-10 03:42 327K gbLoaded.txt.gz 2020-08-19 18:55 111K ensemblToGeneName.txt.gz 2019-02-10 03:42 104K ensemblSource.txt.gz 2019-02-10 03:42 96K trackDb.txt.gz 2024-01-31 15:13 73K all_mrna.txt.gz 2020-08-19 18:14 61K refGene.txt.gz 2020-08-19 18:28 43K refSeqAli.txt.gz 2020-08-19 18:45 40K refFlat.txt.gz 2020-08-19 18:28 38K mrnaOrientInfo.txt.gz 2020-08-19 18:32 31K all_est.txt.gz 2011-04-18 07:18 17K tRNAs.txt.gz 2012-04-16 03:06 12K intronEst.txt.gz 2011-04-18 07:19 9.5K tableDescriptions.txt.gz 2024-12-07 02:03 9.1K tableList.txt.gz 2024-12-08 03:20 7.2K estOrientInfo.txt.gz 2011-04-18 07:22 6.6K history.txt.gz 2009-07-20 16:05 3.7K netPonAbe2.sql 2010-12-10 11:22 2.3K netOrnAna1.sql 2010-12-10 11:56 2.3K netGalGal3.sql 2010-12-10 11:45 2.3K netEquCab2.sql 2010-12-10 11:57 2.3K netDanRer5.sql 2010-12-10 12:33 2.3K netCanFam2.sql 2010-12-10 11:48 2.3K netHg19.sql 2010-12-10 11:53 2.3K xenoRefSeqAli.sql 2020-08-19 18:45 2.1K blastHg18KG.sql 2009-07-20 16:02 2.1K refSeqAli.sql 2020-08-19 18:45 2.1K xenoMrna.sql 2020-08-19 18:14 2.1K all_mrna.sql 2020-08-19 18:14 2.1K netNeoSch1.sql 2020-07-17 10:31 2.1K netMm39.sql 2020-11-25 07:50 2.1K netRheMac3.sql 2012-12-02 18:39 2.1K netPetMar2.sql 2013-01-24 03:47 2.1K netCerSim1.sql 2013-01-29 23:26 2.1K netXenTro9.sql 2017-12-14 12:38 2.1K netXenTro3.sql 2019-06-02 03:26 2.1K netMelGal5.sql 2017-03-20 09:13 2.1K netMm10.sql 2013-10-27 18:43 2.1K netRn6.sql 2017-03-27 17:27 2.1K trackDb.sql 2024-01-31 15:13 2.1K intronEst.sql 2011-04-18 07:19 2.0K all_est.sql 2011-04-18 07:18 2.0K netSusScr2.sql 2010-12-10 11:57 2.0K netPanTro3.sql 2011-06-12 11:15 2.0K netOviAri1.sql 2011-04-25 10:01 2.0K netOryCun2.sql 2010-12-10 11:03 2.0K netMelGal1.sql 2011-11-06 14:42 2.0K netLoxAfr3.sql 2011-11-21 19:12 2.0K netFelCat4.sql 2010-12-10 11:51 2.0K netCalJac3.sql 2010-12-10 12:29 2.0K netBosTau7.sql 2012-06-16 20:25 2.0K netAilMel1.sql 2010-12-10 12:33 2.0K xenoRefGene.sql 2020-08-19 18:32 2.0K refGene.sql 2020-08-19 18:28 1.9K augustusGene.sql 2015-07-26 16:46 1.9K ensGene.sql 2019-02-10 03:42 1.9K simpleRepeat.sql 2009-07-20 16:05 1.9K nestedRepeats.sql 2009-07-20 15:57 1.9K nscanGene.sql 2009-07-20 16:02 1.9K phastCons9way.sql 2010-12-10 11:03 1.9K rmsk.sql 2009-07-20 16:02 1.9K multiz9wayFrames.sql 2010-12-10 12:25 1.8K mrnaOrientInfo.sql 2020-08-19 18:32 1.8K chainPonAbe2.sql 2010-12-10 12:19 1.8K chainOrnAna1.sql 2010-12-10 11:34 1.8K chainGalGal3.sql 2010-12-10 11:53 1.8K chainEquCab2.sql 2010-12-10 11:23 1.8K chainDanRer5.sql 2010-12-10 11:02 1.8K chainCanFam2.sql 2010-12-10 11:51 1.8K chainHg19.sql 2010-12-10 12:25 1.8K hgFindSpec.sql 2024-01-31 15:13 1.8K xenoRefFlat.sql 2020-08-19 18:32 1.7K chainNeoSch1.sql 2020-07-17 10:23 1.7K refFlat.sql 2020-08-19 18:28 1.7K chainMm39.sql 2020-11-25 07:47 1.7K quality.sql 2009-07-20 15:58 1.7K gc5Base.sql 2009-07-20 16:01 1.7K chainRheMac3.sql 2012-12-02 18:39 1.7K chainPetMar2.sql 2013-01-24 03:48 1.7K chainCerSim1.sql 2013-01-29 23:32 1.7K chainXenTro3.sql 2019-06-02 03:21 1.7K cpgIslandExtUnmasked.sql 2014-06-01 17:03 1.7K chainXenTro9.sql 2017-12-14 12:34 1.7K chainMelGal5.sql 2017-03-20 09:11 1.7K chainMm10.sql 2013-10-27 18:38 1.7K chainRn6.sql 2017-03-27 16:45 1.7K estOrientInfo.sql 2011-04-18 07:22 1.7K tRNAs.sql 2012-04-16 03:06 1.7K chainSusScr2.sql 2010-12-10 11:24 1.6K chainPanTro3.sql 2011-06-12 11:24 1.6K chainOviAri1.sql 2011-04-25 10:01 1.6K chainOryCun2.sql 2010-12-10 12:27 1.6K chainMelGal1.sql 2011-11-06 14:55 1.6K chainLoxAfr3.sql 2011-11-21 19:08 1.6K chainFelCat4.sql 2010-12-10 11:48 1.6K chainCalJac3.sql 2010-12-10 11:20 1.6K chainBosTau7.sql 2012-06-16 20:27 1.6K chainAilMel1.sql 2010-12-10 11:02 1.6K cpgIslandExt.sql 2009-07-20 15:58 1.6K gbLoaded.sql 2020-08-19 18:55 1.6K gold.sql 2009-07-20 16:06 1.6K tableList.sql 2024-12-08 03:20 1.6K genscan.sql 2009-07-20 15:57 1.6K multiz9waySummary.sql 2010-12-10 11:57 1.6K chainNeoSch1Link.sql 2020-07-17 10:30 1.6K chainMm39Link.sql 2020-11-25 07:49 1.6K chainRheMac3Link.sql 2012-12-02 18:42 1.6K chainPetMar2Link.sql 2013-01-24 03:47 1.6K chainCerSim1Link.sql 2013-01-29 23:26 1.6K chainXenTro3Link.sql 2019-06-02 03:22 1.5K chainXenTro9Link.sql 2017-12-14 12:35 1.5K chainPonAbe2Link.sql 2010-12-10 11:36 1.5K chainOrnAna1Link.sql 2010-12-10 11:49 1.5K chainMelGal5Link.sql 2017-03-20 09:11 1.5K chainGalGal3Link.sql 2010-12-10 10:57 1.5K chainEquCab2Link.sql 2010-12-10 12:05 1.5K chainDanRer5Link.sql 2010-12-10 12:30 1.5K chainCanFam2Link.sql 2010-12-10 11:00 1.5K multiz9way.sql 2010-12-10 11:22 1.5K chainMm10Link.sql 2013-10-27 18:38 1.5K chainHg19Link.sql 2010-12-10 11:25 1.5K chainRn6Link.sql 2017-03-27 16:49 1.5K cytoBandIdeo.sql 2013-04-28 19:07 1.5K gap.sql 2009-07-20 15:57 1.5K phastConsElements9way.sql 2010-12-10 11:22 1.5K microsat.sql 2015-08-23 21:56 1.5K chainSusScr2Link.sql 2010-12-10 11:45 1.5K chainPanTro3Link.sql 2011-06-12 11:15 1.5K chainOviAri1Link.sql 2011-04-25 09:58 1.5K chainOryCun2Link.sql 2010-12-10 11:08 1.5K chainMelGal1Link.sql 2011-11-06 14:53 1.5K chainLoxAfr3Link.sql 2011-11-21 19:12 1.5K chainFelCat4Link.sql 2010-12-10 11:51 1.5K chainCalJac3Link.sql 2010-12-10 11:03 1.5K chainBosTau7Link.sql 2012-06-16 19:47 1.5K chainAilMel1Link.sql 2010-12-10 12:31 1.5K tableDescriptions.sql 2024-12-07 02:03 1.5K history.sql 2009-07-20 16:05 1.4K chromAlias.sql 2017-09-03 05:42 1.4K ensGtp.sql 2019-02-10 03:42 1.4K bigFiles.sql 2024-12-08 03:20 1.4K ensemblToGeneName.sql 2019-02-10 03:42 1.4K grp.sql 2014-03-02 04:14 1.4K windowmaskerSdust.sql 2009-07-20 15:59 1.4K ensemblSource.sql 2019-02-10 03:42 1.4K ensPep.sql 2019-02-10 03:42 1.3K extFile.sql 2009-07-20 16:05 1.3K chromInfo.sql 2009-07-20 15:58 1.2K genscanPep.sql 2009-07-20 15:58 1.2K nscanPep.sql 2009-07-20 16:05 1.1K hgFindSpec.txt.gz 2024-01-31 15:13 1.0K extFile.txt.gz 2009-07-20 16:05 223 grp.txt.gz 2014-03-02 04:14 208 chromAlias.txt.gz 2017-09-03 05:42 205 chromInfo.txt.gz 2009-07-20 15:58 164 cytoBandIdeo.txt.gz 2013-04-28 19:07 155 bigFiles.txt.gz 2024-12-08 03:20 33