This directory contains a dump of the UCSC genome annotation 
database for the Oct. 2006 assembly of the opossum genome (UCSC
version monDom5) from the Broad Institute at MIT and Harvard.

The directory is updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom5
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/monDom5/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

-----------------------------------------------------------
All the tables in this directory are freely usable for any 
purpose. The opossum sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data (The
   Broad Institute) are properly acknowledged. 
3. The centers producing the data reserve the right to publish the 
   initial large-scale analyses of the data set, including large-scale 
   identification of regions of evolutionary conservation and large-scale 
   genomic assembly.  Large-scale refers to regions with size on the order 
   of a chromosome (that is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                         Last modified      Size  Description
Parent Directory - gap.sql 2009-07-20 15:57 1.5K gap.txt.gz 2009-07-20 15:57 1.0M genscan.sql 2009-07-20 15:57 1.6K genscan.txt.gz 2009-07-20 15:57 2.3M nestedRepeats.sql 2009-07-20 15:57 1.9K nestedRepeats.txt.gz 2009-07-20 15:57 23M genscanPep.sql 2009-07-20 15:58 1.2K genscanPep.txt.gz 2009-07-20 15:58 7.9M cpgIslandExt.sql 2009-07-20 15:58 1.6K cpgIslandExt.txt.gz 2009-07-20 15:58 484K chromInfo.sql 2009-07-20 15:58 1.2K chromInfo.txt.gz 2009-07-20 15:58 164 quality.sql 2009-07-20 15:58 1.7K quality.txt.gz 2009-07-20 15:59 64M windowmaskerSdust.sql 2009-07-20 15:59 1.4K windowmaskerSdust.txt.gz 2009-07-20 16:00 204M gc5Base.sql 2009-07-20 16:01 1.7K gc5Base.txt.gz 2009-07-20 16:02 14M nscanGene.sql 2009-07-20 16:02 1.9K nscanGene.txt.gz 2009-07-20 16:02 3.6M blastHg18KG.sql 2009-07-20 16:02 2.1K blastHg18KG.txt.gz 2009-07-20 16:02 3.6M rmsk.sql 2009-07-20 16:02 1.9K rmsk.txt.gz 2009-07-20 16:03 199M history.sql 2009-07-20 16:05 1.4K history.txt.gz 2009-07-20 16:05 3.7K nscanPep.sql 2009-07-20 16:05 1.1K nscanPep.txt.gz 2009-07-20 16:05 12M simpleRepeat.sql 2009-07-20 16:05 1.9K simpleRepeat.txt.gz 2009-07-20 16:05 26M extFile.sql 2009-07-20 16:05 1.3K extFile.txt.gz 2009-07-20 16:05 223 gold.sql 2009-07-20 16:06 1.6K gold.txt.gz 2009-07-20 16:06 1.3M chainGalGal3Link.sql 2010-12-10 10:57 1.5K chainGalGal3Link.txt.gz 2010-12-10 10:58 144M chainCanFam2Link.sql 2010-12-10 11:00 1.5K chainCanFam2Link.txt.gz 2010-12-10 11:01 330M chainAilMel1.sql 2010-12-10 11:02 1.6K chainAilMel1.txt.gz 2010-12-10 11:02 33M chainDanRer5.sql 2010-12-10 11:02 1.8K chainDanRer5.txt.gz 2010-12-10 11:02 19M netOryCun2.sql 2010-12-10 11:03 2.0K netOryCun2.txt.gz 2010-12-10 11:03 18M phastCons9way.sql 2010-12-10 11:03 1.9K phastCons9way.txt.gz 2010-12-10 11:03 76M chainCalJac3Link.sql 2010-12-10 11:03 1.5K chainCalJac3Link.txt.gz 2010-12-10 11:05 758M chainOryCun2Link.sql 2010-12-10 11:08 1.5K chainOryCun2Link.txt.gz 2010-12-10 11:10 966M chainCalJac3.sql 2010-12-10 11:20 1.6K chainCalJac3.txt.gz 2010-12-10 11:21 272M phastConsElements9way.sql 2010-12-10 11:22 1.5K phastConsElements9way.txt.gz 2010-12-10 11:22 7.8M multiz9way.sql 2010-12-10 11:22 1.5K multiz9way.txt.gz 2010-12-10 11:22 93M netPonAbe2.sql 2010-12-10 11:22 2.3K netPonAbe2.txt.gz 2010-12-10 11:23 28M chainEquCab2.sql 2010-12-10 11:23 1.8K chainEquCab2.txt.gz 2010-12-10 11:23 254M chainSusScr2.sql 2010-12-10 11:24 1.6K chainSusScr2.txt.gz 2010-12-10 11:25 153M chainHg19Link.sql 2010-12-10 11:25 1.5K chainHg19Link.txt.gz 2010-12-10 11:28 1.2G chainOrnAna1.sql 2010-12-10 11:34 1.8K chainOrnAna1.txt.gz 2010-12-10 11:34 88M chainPonAbe2Link.sql 2010-12-10 11:36 1.5K chainPonAbe2Link.txt.gz 2010-12-10 11:39 1.2G netGalGal3.sql 2010-12-10 11:45 2.3K netGalGal3.txt.gz 2010-12-10 11:45 9.3M chainSusScr2Link.sql 2010-12-10 11:45 1.5K chainSusScr2Link.txt.gz 2010-12-10 11:46 520M netCanFam2.sql 2010-12-10 11:48 2.3K netCanFam2.txt.gz 2010-12-10 11:48 26M chainFelCat4.sql 2010-12-10 11:48 1.6K chainFelCat4.txt.gz 2010-12-10 11:48 28M chainOrnAna1Link.sql 2010-12-10 11:49 1.5K chainOrnAna1Link.txt.gz 2010-12-10 11:49 327M netFelCat4.sql 2010-12-10 11:51 2.0K netFelCat4.txt.gz 2010-12-10 11:51 18M chainCanFam2.sql 2010-12-10 11:51 1.8K chainCanFam2.txt.gz 2010-12-10 11:51 39M chainFelCat4Link.sql 2010-12-10 11:51 1.5K chainFelCat4Link.txt.gz 2010-12-10 11:52 165M chainGalGal3.sql 2010-12-10 11:53 1.8K chainGalGal3.txt.gz 2010-12-10 11:53 40M netHg19.sql 2010-12-10 11:53 2.3K netHg19.txt.gz 2010-12-10 11:53 34M netOrnAna1.sql 2010-12-10 11:56 2.3K netOrnAna1.txt.gz 2010-12-10 11:56 23M multiz9waySummary.sql 2010-12-10 11:57 1.6K multiz9waySummary.txt.gz 2010-12-10 11:57 33M netSusScr2.sql 2010-12-10 11:57 2.0K netSusScr2.txt.gz 2010-12-10 11:57 17M netEquCab2.sql 2010-12-10 11:57 2.3K netEquCab2.txt.gz 2010-12-10 11:57 28M chainEquCab2Link.sql 2010-12-10 12:05 1.5K chainEquCab2Link.txt.gz 2010-12-10 12:07 1.0G chainPonAbe2.sql 2010-12-10 12:19 1.8K chainPonAbe2.txt.gz 2010-12-10 12:20 430M multiz9wayFrames.sql 2010-12-10 12:25 1.8K multiz9wayFrames.txt.gz 2010-12-10 12:25 18M chainHg19.sql 2010-12-10 12:25 1.8K chainHg19.txt.gz 2010-12-10 12:26 340M chainOryCun2.sql 2010-12-10 12:27 1.6K chainOryCun2.txt.gz 2010-12-10 12:28 337M netCalJac3.sql 2010-12-10 12:29 2.0K netCalJac3.txt.gz 2010-12-10 12:30 21M chainDanRer5Link.sql 2010-12-10 12:30 1.5K chainDanRer5Link.txt.gz 2010-12-10 12:30 98M chainAilMel1Link.sql 2010-12-10 12:31 1.5K chainAilMel1Link.txt.gz 2010-12-10 12:31 213M netDanRer5.sql 2010-12-10 12:33 2.3K netDanRer5.txt.gz 2010-12-10 12:33 8.8M netAilMel1.sql 2010-12-10 12:33 2.0K netAilMel1.txt.gz 2010-12-10 12:33 21M all_est.sql 2011-04-18 07:18 2.0K all_est.txt.gz 2011-04-18 07:18 17K intronEst.sql 2011-04-18 07:19 2.0K intronEst.txt.gz 2011-04-18 07:19 9.5K estOrientInfo.sql 2011-04-18 07:22 1.7K estOrientInfo.txt.gz 2011-04-18 07:22 6.6K chainOviAri1Link.sql 2011-04-25 09:58 1.5K chainOviAri1Link.txt.gz 2011-04-25 09:59 114M netOviAri1.sql 2011-04-25 10:01 2.0K netOviAri1.txt.gz 2011-04-25 10:01 16M chainOviAri1.sql 2011-04-25 10:01 1.6K chainOviAri1.txt.gz 2011-04-25 10:01 33M netPanTro3.sql 2011-06-12 11:15 2.0K netPanTro3.txt.gz 2011-06-12 11:15 34M chainPanTro3Link.sql 2011-06-12 11:15 1.5K chainPanTro3Link.txt.gz 2011-06-12 11:18 1.2G chainPanTro3.sql 2011-06-12 11:24 1.6K chainPanTro3.txt.gz 2011-06-12 11:25 344M netMelGal1.sql 2011-11-06 14:42 2.0K netMelGal1.txt.gz 2011-11-06 14:42 8.5M chainMelGal1Link.sql 2011-11-06 14:53 1.5K chainMelGal1Link.txt.gz 2011-11-06 14:53 36M chainMelGal1.sql 2011-11-06 14:55 1.6K chainMelGal1.txt.gz 2011-11-06 14:55 7.9M chainLoxAfr3.sql 2011-11-21 19:08 1.6K chainLoxAfr3.txt.gz 2011-11-21 19:09 420M netLoxAfr3.sql 2011-11-21 19:12 2.0K netLoxAfr3.txt.gz 2011-11-21 19:12 22M chainLoxAfr3Link.sql 2011-11-21 19:12 1.5K chainLoxAfr3Link.txt.gz 2011-11-21 19:15 1.1G tRNAs.sql 2012-04-16 03:06 1.7K tRNAs.txt.gz 2012-04-16 03:06 12K chainBosTau7Link.sql 2012-06-16 19:47 1.5K chainBosTau7Link.txt.gz 2012-06-16 19:57 776M netBosTau7.sql 2012-06-16 20:25 2.0K netBosTau7.txt.gz 2012-06-16 20:26 20M chainBosTau7.sql 2012-06-16 20:27 1.6K chainBosTau7.txt.gz 2012-06-16 20:30 250M netRheMac3.sql 2012-12-02 18:39 2.1K netRheMac3.txt.gz 2012-12-02 18:39 21M chainRheMac3.sql 2012-12-02 18:39 1.7K chainRheMac3.txt.gz 2012-12-02 18:40 559M chainRheMac3Link.sql 2012-12-02 18:42 1.6K chainRheMac3Link.txt.gz 2012-12-02 18:44 1.3G chainPetMar2Link.sql 2013-01-24 03:47 1.6K chainPetMar2Link.txt.gz 2013-01-24 03:47 43M netPetMar2.sql 2013-01-24 03:47 2.1K netPetMar2.txt.gz 2013-01-24 03:47 2.8M chainPetMar2.sql 2013-01-24 03:48 1.7K chainPetMar2.txt.gz 2013-01-24 03:48 13M netCerSim1.sql 2013-01-29 23:26 2.1K netCerSim1.txt.gz 2013-01-29 23:26 29M chainCerSim1Link.sql 2013-01-29 23:26 1.6K chainCerSim1Link.txt.gz 2013-01-29 23:28 1.0G chainCerSim1.sql 2013-01-29 23:32 1.7K chainCerSim1.txt.gz 2013-01-29 23:32 253M cytoBandIdeo.sql 2013-04-28 19:07 1.5K cytoBandIdeo.txt.gz 2013-04-28 19:07 155 chainMm10.sql 2013-10-27 18:38 1.7K chainMm10.txt.gz 2013-10-27 18:38 198M chainMm10Link.sql 2013-10-27 18:38 1.5K chainMm10Link.txt.gz 2013-10-27 18:40 1.1G netMm10.sql 2013-10-27 18:43 2.1K netMm10.txt.gz 2013-10-27 18:44 23M grp.sql 2014-03-02 04:14 1.4K grp.txt.gz 2014-03-02 04:14 208 cpgIslandExtUnmasked.sql 2014-06-01 17:03 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 17:03 619K augustusGene.sql 2015-07-26 16:46 1.9K augustusGene.txt.gz 2015-07-26 16:46 2.0M microsat.sql 2015-08-23 21:56 1.5K microsat.txt.gz 2015-08-23 21:56 1.0M chainMelGal5.sql 2017-03-20 09:11 1.7K chainMelGal5.txt.gz 2017-03-20 09:11 12M chainMelGal5Link.sql 2017-03-20 09:11 1.5K chainMelGal5Link.txt.gz 2017-03-20 09:11 42M netMelGal5.sql 2017-03-20 09:13 2.1K netMelGal5.txt.gz 2017-03-20 09:13 8.5M chainRn6.sql 2017-03-27 16:45 1.7K chainRn6.txt.gz 2017-03-27 16:46 103M chainRn6Link.sql 2017-03-27 16:49 1.5K chainRn6Link.txt.gz 2017-03-27 16:57 749M netRn6.sql 2017-03-27 17:27 2.1K netRn6.txt.gz 2017-03-27 17:27 24M chromAlias.sql 2017-09-03 05:42 1.4K chromAlias.txt.gz 2017-09-03 05:42 205 chainXenTro9.sql 2017-12-14 12:34 1.7K chainXenTro9.txt.gz 2017-12-14 12:34 230M chainXenTro9Link.sql 2017-12-14 12:35 1.5K chainXenTro9Link.txt.gz 2017-12-14 12:36 809M netXenTro9.sql 2017-12-14 12:38 2.1K netXenTro9.txt.gz 2017-12-14 12:38 7.8M ensGtp.sql 2019-02-10 03:42 1.4K ensGtp.txt.gz 2019-02-10 03:42 327K ensPep.sql 2019-02-10 03:42 1.3K ensPep.txt.gz 2019-02-10 03:42 6.4M ensGene.sql 2019-02-10 03:42 1.9K ensGene.txt.gz 2019-02-10 03:42 2.5M ensemblSource.sql 2019-02-10 03:42 1.4K ensemblSource.txt.gz 2019-02-10 03:42 96K ensemblToGeneName.sql 2019-02-10 03:42 1.4K ensemblToGeneName.txt.gz 2019-02-10 03:42 104K chainXenTro3.sql 2019-06-02 03:21 1.7K chainXenTro3.txt.gz 2019-06-02 03:21 223M chainXenTro3Link.sql 2019-06-02 03:22 1.5K chainXenTro3Link.txt.gz 2019-06-02 03:23 788M netXenTro3.sql 2019-06-02 03:26 2.1K netXenTro3.txt.gz 2019-06-02 03:26 7.5M chainNeoSch1.sql 2020-07-17 10:23 1.7K chainNeoSch1.txt.gz 2020-07-17 10:23 318M chainNeoSch1Link.sql 2020-07-17 10:30 1.6K chainNeoSch1Link.txt.gz 2020-07-17 10:30 1.1G netNeoSch1.sql 2020-07-17 10:31 2.1K netNeoSch1.txt.gz 2020-07-17 10:31 33M all_mrna.sql 2020-08-19 18:14 2.1K all_mrna.txt.gz 2020-08-19 18:14 61K xenoMrna.sql 2020-08-19 18:14 2.1K xenoMrna.txt.gz 2020-08-19 18:14 213M refGene.sql 2020-08-19 18:28 1.9K refGene.txt.gz 2020-08-19 18:28 43K refFlat.sql 2020-08-19 18:28 1.7K refFlat.txt.gz 2020-08-19 18:28 38K xenoRefGene.sql 2020-08-19 18:32 2.0K xenoRefGene.txt.gz 2020-08-19 18:32 26M xenoRefFlat.sql 2020-08-19 18:32 1.7K xenoRefFlat.txt.gz 2020-08-19 18:32 23M mrnaOrientInfo.sql 2020-08-19 18:32 1.8K mrnaOrientInfo.txt.gz 2020-08-19 18:32 31K refSeqAli.sql 2020-08-19 18:45 2.1K refSeqAli.txt.gz 2020-08-19 18:45 40K xenoRefSeqAli.sql 2020-08-19 18:45 2.1K xenoRefSeqAli.txt.gz 2020-08-19 18:45 25M gbLoaded.sql 2020-08-19 18:55 1.6K gbLoaded.txt.gz 2020-08-19 18:55 111K chainMm39.sql 2020-11-25 07:47 1.7K chainMm39.txt.gz 2020-11-25 07:47 41M chainMm39Link.sql 2020-11-25 07:49 1.6K chainMm39Link.txt.gz 2020-11-25 07:49 240M netMm39.sql 2020-11-25 07:50 2.1K netMm39.txt.gz 2020-11-25 07:50 15M trackDb_pushedout.sql 2023-03-28 13:51 2.1K trackDb_pushedout.txt.gz 2023-03-28 13:51 73K hgFindSpec_pushedout.sql 2023-03-28 13:51 1.8K hgFindSpec_pushedout.txt.gz 2023-03-28 13:51 1.0K trackDb.sql 2024-01-31 15:13 2.1K trackDb.txt.gz 2024-01-31 15:13 73K hgFindSpec.sql 2024-01-31 15:13 1.8K hgFindSpec.txt.gz 2024-01-31 15:13 1.0K tableDescriptions.sql 2024-05-11 02:03 1.5K tableDescriptions.txt.gz 2024-05-11 02:03 9.1K tableList.sql 2024-05-12 03:19 1.6K tableList.txt.gz 2024-05-12 03:19 7.4K bigFiles.sql 2024-05-12 03:19 1.4K bigFiles.txt.gz 2024-05-12 03:19 33