This directory contains a dump of the UCSC genome annotation 
database for the Oct. 2004 assembly of the opossum genome (UCSC
version monDom1) from the Broad Institute at MIT and Harvard.

The directory is updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/monDom1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the tables in this directory are freely usable for any 
purpose. The opossum sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data (The
   Broad Institute) are properly acknowledged. 
3. The centers producing the data reserve the right to publish the 
   initial large-scale analyses of the data set, including large-scale 
   identification of regions of evolutionary conservation and large-scale 
   genomic assembly.  Large-scale refers to regions with size on the order 
   of a chromosome (that is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                        Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2024-07-21 03:26 33 bigFiles.sql 2024-07-21 03:26 1.4K tableList.txt.gz 2024-07-21 03:26 3.0K tableList.sql 2024-07-21 03:26 1.6K tableDescriptions.txt.gz 2024-07-20 02:03 5.5K tableDescriptions.sql 2024-07-20 02:03 1.5K hgFindSpec.txt.gz 2023-03-28 13:51 732 hgFindSpec.sql 2023-03-28 13:51 1.8K trackDb.txt.gz 2023-03-28 13:51 25K trackDb.sql 2023-03-28 13:51 2.1K gbLoaded.txt.gz 2020-08-22 12:20 15K gbLoaded.sql 2020-08-22 12:20 1.6K xenoRefSeqAli.txt.gz 2020-08-22 12:05 32M xenoRefSeqAli.sql 2020-08-22 12:05 2.1K xenoRefFlat.txt.gz 2020-08-22 12:05 31M xenoRefFlat.sql 2020-08-22 12:05 1.7K xenoRefGene.txt.gz 2020-08-22 12:05 34M xenoRefGene.sql 2020-08-22 12:05 2.0K mrnaOrientInfo.txt.gz 2019-03-17 11:24 14K mrnaOrientInfo.sql 2019-03-17 11:24 1.8K all_mrna.txt.gz 2019-03-17 11:24 65K all_mrna.sql 2019-03-17 11:24 2.1K xenoMrna.txt.gz 2016-02-21 20:04 290M xenoMrna.sql 2016-02-21 20:04 2.4K augustusGene.txt.gz 2015-07-26 16:38 2.0M augustusGene.sql 2015-07-26 16:38 1.9K cpgIslandExtUnmasked.txt.gz 2014-06-01 16:52 594K cpgIslandExtUnmasked.sql 2014-06-01 16:52 1.7K grp.txt.gz 2014-03-02 04:14 223 grp.sql 2014-03-02 04:14 1.4K simpleRepeat.sql 2013-10-01 12:48 1.1K rmsk.sql 2013-10-01 12:48 1.1K quality.sql 2013-10-01 12:48 890 phastCons5.sql 2013-10-01 12:48 898 netMm6.sql 2013-10-01 12:48 1.3K netHg17.sql 2013-10-01 12:48 1.3K netGalGal2.sql 2013-10-01 12:48 1.3K netDanRer2.sql 2013-10-01 12:48 1.3K multiz5way.sql 2013-10-01 12:48 661 mostConserved.sql 2013-10-01 12:48 650 mm5_netBlastz.sql 2013-10-01 12:48 667 history.sql 2013-10-01 12:48 537 hg17_netBlastz.sql 2013-10-01 12:48 669 gold.sql 2013-10-01 12:48 799 genscanPep.sql 2013-10-01 12:48 330 genscan.sql 2013-10-01 12:48 748 gc5Base.sql 2013-10-01 12:48 890 gap.sql 2013-10-01 12:48 722 galGal2_netBlastz.sql 2013-10-01 12:48 675 extFile.sql 2013-10-01 12:48 445 danRer2_netBlastz.sql 2013-10-01 12:48 675 cpgIslandExt.sql 2013-10-01 12:48 751 contigAcc.sql 2013-10-01 12:48 343 chromInfo.sql 2013-10-01 12:48 396 chainMm6Link.sql 2013-10-01 12:48 577 chainMm6.sql 2013-10-01 12:48 878 chainHg17Link.sql 2013-10-01 12:48 579 chainHg17.sql 2013-10-01 12:48 880 chainGalGal2Link.sql 2013-10-01 12:48 585 chainGalGal2.sql 2013-10-01 12:48 886 chainDanRer2Link.sql 2013-10-01 12:48 585 chainDanRer2.sql 2013-10-01 12:48 886 blastHg17KG.sql 2013-10-01 12:48 1.3K gbDelete_tmp.txt.gz 2009-08-19 15:43 171K gbDelete_tmp.sql 2009-08-19 15:43 1.3K microsat.txt.gz 2006-08-03 07:52 1.0M microsat.sql 2006-08-03 07:52 1.3K netMm6.txt.gz 2005-05-05 06:48 22M chainMm6Link.txt.gz 2005-05-05 06:43 369M chainMm6.txt.gz 2005-05-05 06:37 34M contigAcc.txt.gz 2005-03-24 05:08 546K mm5_netBlastz.txt.gz 2005-01-20 04:52 7.3M hg17_netBlastz.txt.gz 2005-01-20 04:52 11M galGal2_netBlastz.txt.gz 2005-01-20 04:51 4.2M danRer2_netBlastz.txt.gz 2005-01-20 04:51 2.2M phastCons5.txt.gz 2005-01-20 04:50 30M simpleRepeat.txt.gz 2005-01-15 06:14 16M rmsk.txt.gz 2005-01-15 06:10 446M quality.txt.gz 2005-01-15 06:04 67M netHg17.txt.gz 2005-01-15 06:01 35M netGalGal2.txt.gz 2005-01-15 06:00 9.4M netDanRer2.txt.gz 2005-01-15 06:00 6.0M multiz5way.txt.gz 2005-01-15 05:59 15M mostConserved.txt.gz 2005-01-15 05:59 19M history.txt.gz 2005-01-15 05:59 508 gold.txt.gz 2005-01-15 05:59 1.8M genscanPep.txt.gz 2005-01-15 05:58 8.8M genscan.txt.gz 2005-01-15 05:58 2.4M gc5Base.txt.gz 2005-01-15 05:58 14M gap.txt.gz 2005-01-15 05:57 1.1M extFile.txt.gz 2005-01-15 05:57 182 cpgIslandExt.txt.gz 2005-01-15 05:57 545K chromInfo.txt.gz 2005-01-15 05:57 105K chainHg17Link.txt.gz 2005-01-15 05:44 476M chainHg17.txt.gz 2005-01-15 05:39 40M chainGalGal2Link.txt.gz 2005-01-15 05:38 67M chainGalGal2.txt.gz 2005-01-15 05:37 8.7M chainDanRer2Link.txt.gz 2005-01-15 05:37 46M chainDanRer2.txt.gz 2005-01-15 05:36 4.7M blastHg17KG.txt.gz 2005-01-15 05:36 4.3M