This directory contains compressed multiple alignments of the 
following assemblies to the mouse genome (mm5, May 2004):
  - rat (rn3, Jun. 2003)
  - human (hg17, May 2004) 
  - dog (canFam1, Jul. 2004) 
  - chicken (galGal2, Feb. 2004) 

Files included in this directory:
  - chr*.maf.gz files: each contain all the alignments to that 
    particular mouse chromosome.  

For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, 
then go to the directory goldenPath/mm5/multiz5way. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the files in this directory are freely usable for any 
purpose. For data use restrictions regarding the dog and chicken 
genomes, see http://genome.ucsc.edu/goldenPath/credits.html.

      Name                    Last modified      Size  Description
Parent Directory - md5sum.txt 2004-08-03 12:32 2.1K chrY_random.maf.gz 2004-08-03 12:27 164K chrY.maf.gz 2004-08-03 12:27 14M chrX_random.maf.gz 2004-08-03 12:27 4.1M chrX.maf.gz 2004-08-03 12:27 97M chrUn_random.maf.gz 2004-08-03 12:24 26M chrM.maf.gz 2004-08-03 12:23 29K chr19_random.maf.gz 2004-08-03 11:56 371K chr19.maf.gz 2004-08-03 11:56 52M chr18_random.maf.gz 2004-08-03 11:54 699K chr18.maf.gz 2004-08-03 11:54 74M chr17_random.maf.gz 2004-08-03 11:52 654K chr17.maf.gz 2004-08-03 11:52 71M chr16_random.maf.gz 2004-08-03 11:50 774K chr16.maf.gz 2004-08-03 11:50 80M chr15_random.maf.gz 2004-08-03 11:48 358K chr15.maf.gz 2004-08-03 11:48 83M chr14_random.maf.gz 2004-08-03 11:45 1.1M chr14.maf.gz 2004-08-03 11:45 95M chr13_random.maf.gz 2004-08-03 11:42 1.0M chr13.maf.gz 2004-08-03 11:42 91M chr12_random.maf.gz 2004-08-03 11:39 1.2M chr12.maf.gz 2004-08-03 11:39 94M chr11.maf.gz 2004-08-03 11:36 107M chr10_random.maf.gz 2004-08-03 11:33 267K chr10.maf.gz 2004-08-03 11:33 105M chr9_random.maf.gz 2004-08-03 12:23 382K chr9.maf.gz 2004-08-03 12:23 105M chr8_random.maf.gz 2004-08-03 12:21 808K chr8.maf.gz 2004-08-03 12:21 103M chr7_random.maf.gz 2004-08-03 12:18 3.7M chr7.maf.gz 2004-08-03 12:18 101M chr6_random.maf.gz 2004-08-03 12:15 858K chr6.maf.gz 2004-08-03 12:15 120M chr5_random.maf.gz 2004-08-03 12:11 1.4M chr5.maf.gz 2004-08-03 12:11 118M chr4_random.maf.gz 2004-08-03 12:08 5.3M chr4.maf.gz 2004-08-03 12:08 125M chr3_random.maf.gz 2004-08-03 12:04 1.4M chr3.maf.gz 2004-08-03 12:04 124M chr2_random.maf.gz 2004-08-03 12:01 5.3M chr2.maf.gz 2004-08-03 12:01 158M chr1_random.maf.gz 2004-08-03 11:56 803K chr1.maf.gz 2004-08-03 11:30 155M