This directory contains compressed multiple alignments of the 
following assemblies to the mouse genome (mm5, May 2004):
  - rat (rn3, Jun. 2003)
  - human (hg17, May 2004) 
  - dog (canFam1, Jul. 2004) 
  - chicken (galGal2, Feb. 2004) 

Files included in this directory:
  - chr*.maf.gz files: each contain all the alignments to that 
    particular mouse chromosome.  

For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, 
then go to the directory goldenPath/mm5/multiz5way. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the files in this directory are freely usable for any 
purpose. For data use restrictions regarding the dog and chicken 
genomes, see http://genome.ucsc.edu/goldenPath/credits.html.

      Name                    Last modified      Size  Description
Parent Directory - md5sum.txt 2004-08-03 12:32 2.1K chrM.maf.gz 2004-08-03 12:23 29K chrY_random.maf.gz 2004-08-03 12:27 164K chr10_random.maf.gz 2004-08-03 11:33 267K chr15_random.maf.gz 2004-08-03 11:48 358K chr19_random.maf.gz 2004-08-03 11:56 371K chr9_random.maf.gz 2004-08-03 12:23 382K chr17_random.maf.gz 2004-08-03 11:52 654K chr18_random.maf.gz 2004-08-03 11:54 699K chr16_random.maf.gz 2004-08-03 11:50 774K chr1_random.maf.gz 2004-08-03 11:56 803K chr8_random.maf.gz 2004-08-03 12:21 808K chr6_random.maf.gz 2004-08-03 12:15 858K chr13_random.maf.gz 2004-08-03 11:42 1.0M chr14_random.maf.gz 2004-08-03 11:45 1.1M chr12_random.maf.gz 2004-08-03 11:39 1.2M chr3_random.maf.gz 2004-08-03 12:04 1.4M chr5_random.maf.gz 2004-08-03 12:11 1.4M chr7_random.maf.gz 2004-08-03 12:18 3.7M chrX_random.maf.gz 2004-08-03 12:27 4.1M chr2_random.maf.gz 2004-08-03 12:01 5.3M chr4_random.maf.gz 2004-08-03 12:08 5.3M chrY.maf.gz 2004-08-03 12:27 14M chrUn_random.maf.gz 2004-08-03 12:24 26M chr19.maf.gz 2004-08-03 11:56 52M chr17.maf.gz 2004-08-03 11:52 71M chr18.maf.gz 2004-08-03 11:54 74M chr16.maf.gz 2004-08-03 11:50 80M chr15.maf.gz 2004-08-03 11:48 83M chr13.maf.gz 2004-08-03 11:42 91M chr12.maf.gz 2004-08-03 11:39 94M chr14.maf.gz 2004-08-03 11:45 95M chrX.maf.gz 2004-08-03 12:27 97M chr7.maf.gz 2004-08-03 12:18 101M chr8.maf.gz 2004-08-03 12:21 103M chr9.maf.gz 2004-08-03 12:23 105M chr10.maf.gz 2004-08-03 11:33 105M chr11.maf.gz 2004-08-03 11:36 107M chr5.maf.gz 2004-08-03 12:11 118M chr6.maf.gz 2004-08-03 12:15 120M chr3.maf.gz 2004-08-03 12:04 124M chr4.maf.gz 2004-08-03 12:08 125M chr1.maf.gz 2004-08-03 11:30 155M chr2.maf.gz 2004-08-03 12:01 158M