This directory contains the Build 35 finished human genome
assembly (hg17, May 2004). The chromosomal sequences were assembled
by the International Human Genome Project sequencing centers
and verified by NCBI and UCSC.
Files included in this directory:
- chr*.fa.zip: compressed FASTA sequence of each chromosome.
Each chromosome is in a separate file in a zipped Fasta format.
Repeats -- which are shown in lower case -- are annotated by
RepeatMasker run at the sensitive setting and Tandem Repeats Finder
(repeats of period 12 or less).
The main assembly is contained in the chrN.fa files, where N is the name
of the chromosome. The chrN_random.fa files contain clones that are not
yet finished or cannot be placed with certainty at a specific place on
the chromosome. The two files: chr6_hla_hap1.fa.gz chr6_hla_hap2.fa.gz
contain two different haplotypes of the human HLA region on chromosome 6.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/hg17/chromosomes. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
md5sum.txt 2004-06-04 14:20 2.2K
chrY.fa.gz 2004-06-03 13:53 7.7M
chrX_random.fa.gz 2004-06-03 13:52 467K
chrX.fa.gz 2004-06-03 13:52 47M
chrM.fa.gz 2004-06-03 13:53 5.4K
chr22_random.fa.gz 2004-06-03 13:52 67K
chr22.fa.gz 2004-06-03 13:52 11M
chr21.fa.gz 2004-06-03 13:51 11M
chr20.fa.gz 2004-06-03 13:51 19M
chr19_random.fa.gz 2004-06-03 13:51 69K
chr19.fa.gz 2004-06-03 13:51 17M
chr18_random.fa.gz 2004-06-03 13:51 1.4K
chr18.fa.gz 2004-06-03 13:51 23M
chr17_random.fa.gz 2004-06-03 13:50 574K
chr17.fa.gz 2004-06-03 13:50 24M
chr16_random.fa.gz 2004-06-03 13:50 33K
chr16.fa.gz 2004-06-03 13:50 24M
chr15_random.fa.gz 2004-06-03 13:49 187K
chr15.fa.gz 2004-06-03 13:49 25M
chr14.fa.gz 2004-06-03 13:49 28M
chr13_random.fa.gz 2004-06-03 13:48 60K
chr13.fa.gz 2004-06-03 13:48 30M
chr12_random.fa.gz 2004-06-03 13:48 150K
chr12.fa.gz 2004-06-03 13:48 41M
chr11.fa.gz 2004-06-03 13:47 41M
chr10_random.fa.gz 2004-06-03 13:47 35K
chr10.fa.gz 2004-06-03 13:47 41M
chr9_random.fa.gz 2004-06-03 13:46 270K
chr9.fa.gz 2004-06-03 13:46 37M
chr8_random.fa.gz 2004-06-03 13:45 165K
chr8.fa.gz 2004-06-03 13:45 45M
chr7_random.fa.gz 2004-06-03 13:45 200K
chr7.fa.gz 2004-06-03 13:45 48M
chr6_random.fa.gz 2004-06-03 13:44 587K
chr6_hla_hap2.fa.gz 2004-06-03 13:53 49K
chr6_hla_hap1.fa.gz 2004-06-03 13:53 45K
chr6.fa.gz 2004-06-03 13:44 52M
chr5_random.fa.gz 2004-06-03 13:43 47K
chr5.fa.gz 2004-06-03 13:43 56M
chr4_random.fa.gz 2004-06-03 13:42 247K
chr4.fa.gz 2004-06-03 13:42 59M
chr3_random.fa.gz 2004-06-03 13:41 247K
chr3.fa.gz 2004-06-03 13:41 61M
chr2_random.fa.gz 2004-06-03 13:40 115K
chr2.fa.gz 2004-06-03 13:40 74M
chr1_random.fa.gz 2004-06-03 13:39 1.0M
chr1.fa.gz 2004-06-03 13:39 70M